N. Holmes

发表

Nanopore native RNA sequencing of a human poly(A) transcriptome

Angela N. Brooks, Hugh E. Olsen, N. Loman, 2018, bioRxiv.

Telomere-to-telomere assembly of a complete human X chromosome

Mitchell R. Vollger, Glennis A. Logsdon, Karen H. Miga, 2020, Nature.

Telomere-to-telomere assembly of a complete human X chromosome

Sergey Koren, Adam M. Phillippy, Joel Armstrong, 2019, bioRxiv.

Barcode aware adaptive sampling for GridION and PromethION Oxford Nanopore sequencers

M. Loose, N. Holmes, A. Payne, 2021, bioRxiv.

The Impact of Real-Time Whole-Genome Sequencing in Controlling Healthcare-Associated SARS-CoV-2 Outbreaks

J. Ball, M. Loose, W. Irving, 2021, medRxiv.

Differential and defective transcription of koala retrovirus indicates the complexity of host and virus evolution.

J. Meers, M. Loose, J. Seddon, 2022, The Journal of general virology.

minoTour, real-time monitoring and analysis for nanopore sequencers

M. Loose, N. Holmes, A. Payne, 2021, bioRxiv.

SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

William T. Harvey, Scott M Elliott, Robert M. Davies, 2022, Nature Microbiology.

The Nanog epigenetic remodeling complex was essential to vertebrate mesoderm evolution

Andrew D. Johnson, R. Alberio, J. Dixon, 2022, bioRxiv.

Potent anti-SARS-CoV-2 Antibody Responses are Associated with Better Prognosis in Hospital Inpatient COVID-19 Disease

P. Tighe, A. Tarr, J. Ball, 2020, medRxiv.

Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England

Graham W. Taylor, Joshua B. Singer, Scott M Elliott, 2021, Nature.

BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files

Alexander Payne, Nadine Holmes, Vardhman Rakyan, 2018, Bioinform..

Rapid-CNS2: rapid comprehensive adaptive nanopore-sequencing of CNS tumors, a proof-of-concept study

David C. Jones, C. Dieterich, M. Schlesner, 2022, Acta Neuropathologica.

Rapid-CNS2: Rapid comprehensive adaptive nanopore-sequencing of CNS tumors, a proof of concept study

C. Dieterich, M. Schlesner, S. Pfister, 2021, medRxiv.

Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states

V. Rakyan, M. Loose, A. Hodgkinson, 2022, bioRxiv.

The Epiallelic Nature of Mouse Ribosomal DNA

V. Rakyan, M. Loose, A. Hodgkinson, 2021 .

SARS-CoV-2 evolution during treatment of chronic infection

Graham W. Taylor, William L. Hamilton, Joshua B. Singer, 2021, Nature.

Readfish enables targeted nanopore sequencing of gigabase-sized genomes

Alexander Payne, Nadine Holmes, Matthew Loose, 2020, Nature Biotechnology.

Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

William T. Harvey, Scott M Elliott, Kevin R. Cole, 2022, Scientific Reports.

Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

Graham W. Taylor, Scott M Elliott, Jaime M. Tovar-Corona, 2022, Nature Communications.

Genomic reconstruction of the SARS-CoV-2 epidemic in England

William T. Harvey, William L. Hamilton, Richard J. Goater, 2021, Nature.

Genome Reference Assembly for Bottlenecked Southern Australian Koalas

J. Meers, M. Loose, A. Greenwood, 2022, Genome biology and evolution.

SARS-CoV-2 evolution during treatment of chronic infection

Graham W. Taylor, William L. Hamilton, Joshua B. Singer, 2021, Nature.

Real-time monitoring and analysis of SARS-CoV-2 nanopore sequencing with minoTour

M. Loose, N. Holmes, A. Payne, 2021, bioRxiv.

Stat3 oxidation-dependent regulation of gene expression impacts on developmental processes and involves cooperation with Hif-1α

P. Shaw, N. Holmes, R. Bhosale, 2020, PloS one.

Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

William T. Harvey, Scott M Elliott, Robert M. Davies, 2022, Nature Microbiology.

Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples

M. Loose, S. Paterson, R. van Aerle, 2023, Microbial genomics.

NANOG is required to establish the competence for germ-layer differentiation in the basal tetrapod axolotl.

Andrew D. Johnson, M. Loose, R. Alberio, 2023, PLoS biology.

Nanopore adaptive sequencing for mixed samples, whole exome capture and targeted panels

Matthew Loose, Alexander Payne, Nadine Holmes, 2020, bioRxiv.

Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome

Angela N. Brooks, Hugh E. Olsen, N. Loman, 2019, Nature Methods.

The UK Leicester COVID-19 ‘exceedance’ May–July 2020: An analysis of hospitalised cases

J. Tang, M. Loose, N. Holmes, 2021, Journal of Infection.

A single-cell atlas of pig gastrulation as a resource for comparative embryology

R. Alberio, N. Holmes, Doris Klisch, 2023, bioRxiv.

Comparison of variant callers for wastewater-based epidemiology

M. Loose, R. van Aerle, Matthew John Wade, 2022, medRxiv.

Utility of wastewater genomic surveillance compared to clinical surveillance to track the spread of the SARS-CoV-2 Omicron variant across England.

R. Gregory, V. Hill, N. Holmes, 2023, Water research.

COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study

Scott M Elliott, Kevin R. Cole, Robert M. Davies, 2022, Scientific Reports.