Yoshiharu Y. Yamamoto

发表

Identification of plant promoter constituents by analysis of local distribution of short sequences

T. Sakurai, K. Shinozaki, M. Seki, 2007, BMC Genomics.

Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis.

T. Sakurai, K. Shinozaki, M. Seki, 2009, The Plant journal : for cell and molecular biology.

Widespread Translational Inhibition by Plant miRNAs and siRNAs

L. Sieburth, O. Voinnet, P. Brodersen, 2008, Science.

Identification of Arabidopsis Genes Regulated by High Light–Stress Using cDNA Microarray¶

T. Sakurai, K. Shinozaki, M. Seki, 2003, Photochemistry and photobiology.

Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis

M. Seki, Y. Makita, Y. Saijo, 2018, The Plant journal : for cell and molecular biology.

The Responses of Arabidopsis Early Light-Induced Protein2 to Ultraviolet B, High Light, and Cold Stress Are Regulated by a Transcriptional Regulatory Unit Composed of Two Elements1[OPEN]

S. Iuchi, M. Matsui, Mika Nomoto, 2015, Plant Physiology.

Cryptic promoter activation occurs by at least two different mechanisms in the Arabidopsis genome

H. Kimura, R. Hachisu, J. Obokata, 2020, bioRxiv.

Identification of Cis-Acting Promoter Elements in Cold- and Dehydration-Induced Transcriptional Pathways in Arabidopsis, Rice, and Soybean

Kazuo Shinozaki, Hitoshi Sakakibara, Tetsuya Sakurai, 2011, DNA research : an international journal for rapid publication of reports on genes and genomes.

Genome-Wide Association Study and Genomic Prediction Elucidate the Distinct Genetic Architecture of Aluminum and Proton Tolerance in Arabidopsis thaliana

S. Iuchi, Masatomo Kobayashi, Keisuke Tanaka, 2020, Frontiers in Plant Science.

Differentiation of core promoter architecture between plants and mammals revealed by LDSS analysis

Sumio Sugano, Tomoko Abe, Junichi Obokata, 2007, Nucleic acids research.

Positive feedback in plant signaling pathways

X. Deng, M. Matsui, Yoshiharu Y. Yamamoto, 1998 .

Cytosolic GLUTAMINE SYNTHETASE1;1 Modulates Metabolism and Chloroplast Development in Roots1[OPEN]

Kazuki Saito, A. Fukushima, M. Seki, 2020, Plant Physiology.

STOP1 regulates the expression of HsfA2 and GDH genes critical for low-oxygen tolerance in Arabidopsis.

S. Iuchi, Masatomo Kobayashi, Yoshiharu Y. Yamamoto, 2019, Journal of experimental botany.

Next-Generation Sequencing of Genomic DNA Fragments Bound to a Transcription Factor in Vitro Reveals Its Regulatory Potential

Y. Makita, M. Matsui, M. Kawashima, 2014, Genes.

Characterization of NtSTOP1-regulating genes in tobacco under aluminum stress

Yoshiharu Y. Yamamoto, Hiroki Ito, Yuriko Kobayashi, 2019, Soil Science and Plant Nutrition.

H2O2-Mediated Biotic and Abiotic Stress Responses in Plants

Yoshiharu Y. Yamamoto, A. Hieno, Naznin Hushuna Ara, 2019, Signaling and Communication in Plants.

High REDOX RESPONSIVE TRANSCRIPTION FACTOR1 Levels Result in Accumulation of Reactive Oxygen Species in Arabidopsis thaliana Shoots and Roots.

Mika Nomoto, Y. Tada, R. Oelmüller, 2015, Molecular plant.

Possible Involvement of MYB44-Mediated Stomatal Regulation in Systemic Resistance Induced by Penicillium simplicissimum GP17-2 in Arabidopsis

Hushna Ara Naznin, M. Matsui, M. Hyakumachi, 2016, Microbes and environments.

Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots

Kazuki Saito, A. Fukushima, M. Seki, 2020 .

Sequence-based evaluation of promoter context for prediction of transcription start sites in Arabidopsis and rice

Y. Makita, Yoshiharu Y. Yamamoto, Tosei Hiratsuka, 2022, Scientific Reports.

Expression GWAS of PGIP1 Identifies STOP1-Dependent and STOP1-Independent Regulation of PGIP1 in Aluminum Stress Signaling in Arabidopsis

S. Iuchi, Masatomo Kobayashi, Yuki Nakano, 2021, Frontiers in Plant Science.

Characterization of CcSTOP1; a C2H2-type transcription factor regulates Al tolerance gene in pigeonpea

S. Iuchi, S. Panda, Yoshiharu Y. Yamamoto, 2017, Planta.

Identification of Arabidopsis genic and non‐genic promoters by paired‐end sequencing of TSS tags

T. Sakurai, Yutaka Suzuki, A. Kurotani, 2017, The Plant journal : for cell and molecular biology.

Organization of the Light-Responsive Cis-Elements of Tobacco psaDb Gene

J. Obokata, Yoshiharu Y. Yamamoto, Y. Kondo, 1995 .

Polyribosome loading of spinach mRNAs for photosystem I subunits is controlled by photosynthetic electron transport.

R. Oelmüller, J. Obokata, T. Pfannschmidt, 2002, The Plant journal : for cell and molecular biology.

Plant Promoter Database (PPDB).

Yoshiharu Y. Yamamoto, Kazutaka Kusunoki, 2017, Methods in molecular biology.

SENSITIVE TO PROTON RHIZOTOXICITY1, CALMODULIN BINDING TRANSCRIPTION ACTIVATOR2, and Other Transcription Factors Are Involved in ALUMINUM-ACTIVATED MALATE TRANSPORTER1 Expression1[OPEN]

S. Iuchi, Masatomo Kobayashi, Mika Nomoto, 2015, Plant Physiology.

SENSITIVE TO PROTON RHIZOTOXICITY 1 , CALMODULIN BINDING TRANSCRIPTION ACTIVATOR 2 , and Other Transcription Factors Are Involved in ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 Expression 1 [ OPEN ]

S. Iuchi, Masatomo Kobayashi, Mika Nomoto, 2015 .

Analysis of Hydrogen Peroxide–independent Expression of the High-light–inducible ELIP2 Gene with the Aid of the ELIP2 Promoter–Luciferase Fusion¶

M. Matsui, S. Yoshida, T. Abe, 2003 .

Sensitive To Proton Rhizotoxicity1 Regulates Salt and Drought Tolerance of Arabidopsis thaliana Through Transcriptional Regulation of CIPK23.

S. Iuchi, Masatomo Kobayashi, L. Sahoo, 2019, Plant & cell physiology.

Formation of Chlorophyll-Protein Complexes during Greening. 2. Redistribution of Chlorophyll among Apoproteins

H. Tsuji, Yoshiharu Y. Yamamoto, A. Tanaka, 1991 .

Global classification of transcriptional responses to light stress in Arabidopsis thaliana

M. Matsui, S. Yoshida, T. Abe, 2004 .

Analysis of Hydrogen Peroxide–independent Expression of the High‐light–inducible ELIP2 Gene with the Aid of the ELIP2 Promoter–Luciferase Fusion ¶

M. Matsui, S. Yoshida, T. Abe, 2003, Photochemistry and photobiology.

Structure and expression of a nuclear gene for the PSI-D subunit of photosystem I inNicotiana sylvestris

H. Tsuji, J. Obokata, Yoshiharu Y. Yamamoto, 1993, Plant Molecular Biology.

Early Light-Response of psaD, psaE and psaH Gene Families of Photosystem I in Nicotiana sylvestris: PSI-D has an Isoform of Very Quick Response

H. Tsuji, J. Obokata, Yoshiharu Y. Yamamoto, 1995 .

Structure of the Nuclear Genes Coding for Photosystem I Subunits in Nicotiana Sylvestris

J. Obokata, Yoshiharu Y. Yamamoto, Masayuki Nakamura, 1992 .

High affinity promoter binding of STOP1 is essential for the early aluminum-inducible expression of novel Al resistance genes GDH1 and GDH2 in Arabidopsis.

K. Shinozaki, L. Kochian, S. Iuchi, 2021, Journal of experimental botany.

Live imaging of chloroplast FtsZ1 filaments, rings, spirals, and motile dot structures in the AtMinE1 mutant and overexpressor of Arabidopsis thaliana.

R. Itoh, T. Abe, N. Sato, 2009, Plant & cell physiology.

Mechanosensory trichome cells evoke a mechanical stimuli–induced immune response in Arabidopsis thaliana

T. Kinoshita, Yuki Hayashi, I. Mori, 2022, Nature Communications.

Primary Metabolism and Transcriptional Regulation in Higher Plants

Natsuki Hayami, Yoshiharu Y. Yamamoto, Yoshiharu Y. Yamamoto, 2021, Reviews in Agricultural Science.

Analysis of environmental stress in plants with the aid of marker genes for H2O2 responses.

Hushna Ara Naznin, M. Hyakumachi, Yoshiharu Y. Yamamoto, 2013, Methods in enzymology.

LET-dependent effects of heavy-ion beam irradiation in Arabidopsis thaliana

Y. Kazama, T. Abe, Yoshiharu Y. Yamamoto, 2008 .

Characteristics of Core Promoter Types with respect to Gene Structure and Expression in Arabidopsis thaliana

M. Hyakumachi, J. Obokata, Yoshiharu Y. Yamamoto, 2011, DNA research : an international journal for rapid publication of reports on genes and genomes.

CIP4, a New COP1 Target, Is a Nucleus-Localized Positive Regulator of Arabidopsis Photomorphogenesis

X. Deng, M. Matsui, Y. Yamamoto, 2001, Plant Cell.

Cryptic promoter activation occurs by at least two different mechanisms in the Arabidopsis genome.

H. Kimura, M. Matsui, R. Hachisu, 2021, The Plant journal : for cell and molecular biology.

A common sequence motif involved in selection of transcription start sites of Arabidopsis and budding yeast tRNA genes.

M. Sugiura, Y. Yukawa, Yoshiharu Y. Yamamoto, 2011, Genomics.

Design of an optimal promoter involved in the heat‐induced transcriptional pathway in Arabidopsis, soybean, rice and maize

T. Sakurai, K. Shinozaki, S. Iuchi, 2017, The Plant journal : for cell and molecular biology.

INCREASED LEVEL OF POLYPLOIDY1, a Conserved Repressor of CYCLINA2 Transcription, Controls Endoreduplication in Arabidopsis[W][OA]

Minami Matsui, Takeshi Yoshizumi, Miki Nakazawa, 2006, The Plant Cell Online.

VuDREB2A, a novel DREB2-type transcription factor in the drought-tolerant legume cowpea, mediates DRE-dependent expression of stress-responsive genes and confers enhanced drought resistance in transgenic Arabidopsis

S. Iuchi, L. Sahoo, S. Panda, 2014, Planta.

ppdb: a plant promoter database

Junichi Obokata, Yoshiharu Y. Yamamoto, J. Obokata, 2007, Nucleic Acids Res..

Role of a COP1 Interactive Protein in Mediating Light-Regulated Gene Expression in Arabidopsis

X. Deng, M. Matsui, Yoshiharu Y. Yamamoto, 1998, Plant Cell.

Functional analysis of isoforms of NADPH: protochlorophyllide oxidoreductase (POR), PORB and PORC, in Arabidopsis thaliana.

D. Shibata, S. Tabata, H. Ohta, 2003, Plant & cell physiology.

Suppression of MYC transcription activators by the immune cofactor NPR1 fine-tunes plant immune responses.

T. Higashiyama, Hironaka Tsukagoshi, Mika Nomoto, 2021, Cell reports.

Transcriptome Analysis and Identification of a Transcriptional Regulatory Network in the Response to H2O21[OPEN]

Hushna Ara Naznin, M. Matsui, Nobutaka Mitsuda, 2019, Plant Physiology.

Gene trapping of the Arabidopsis genome with a firefly luciferase reporter.

Minami Matsui, M. Matsui, Yoshiharu Y. Yamamoto, 2003, The Plant journal : for cell and molecular biology.

Prediction of transcriptional regulatory elements for plant hormone responses based on microarray data

Hiroyuki Koyama, Mitsuro Hyakumachi, K. Yamaguchi-Shinozaki, 2011, BMC Plant Biology.

Arabidopsis transcriptional regulation by light stress via hydrogen peroxide‐dependent and ‐independent pathways

T. Yoshizumi, M. Matsui, Yoshiharu Y. Yamamoto, 2001, Genes to cells : devoted to molecular & cellular mechanisms.

A stable and efficient nuclear transformation system for the diatom Chaetoceros gracilis

Y. Kashino, K. Ifuku, Yoshiharu Y. Yamamoto, 2015, Photosynthesis Research.

Identification of photosynthetic sacoglossans from Japan

T. Motomura, Y. Yusa, J. Obokata, 2009 .

5′-Leader of a Photosystem I Gene in Nicotiana sylvestris, psaDb, Contains a Translational Enhancer(*)

Y. Yamamoto, H. Tsuji, J. Obokata, 1995, The Journal of Biological Chemistry.

ppdb: plant promoter database version 3.0

Tetsuya Sakurai, Daniel Lang, Ralf Reski, 2013, Nucleic Acids Res..

SnRK1 Kinase and the NAC Transcription Factor SOG1 Are Components of a Novel Signaling Pathway Mediating the Low Energy Response Triggered by ATP Depletion

T. Kuromori, N. Nagata, M. Matsui, 2019, Front. Plant Sci..

Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis.

K. Shinozaki, M. Seki, J. Obokata, 2009, The Plant journal : for cell and molecular biology.

ppdb: a plant promoter database

J. Obokata, Yoshiharu Y. Yamamoto, 2007, Nucleic Acids Res..

STOP1‐regulated SMALL AUXIN UP RNA55 (SAUR55) is involved in proton/malate co‐secretion for Al tolerance in Arabidopsis

S. Iuchi, Y. Fujita, Yoshiharu Y. Yamamoto, 2023, Plant direct.

DFL1, an auxin-responsive GH3 gene homologue, negatively regulates shoot cell elongation and lateral root formation, and positively regulates the light response of hypocotyl length.

T. Yoshizumi, M. Matsui, Y. Yamamoto, 2008, The Plant journal : for cell and molecular biology.

The transcription factors, STOP1 and TCP20, are required for root system architecture alterations in response to nitrate deficiency

L. Kochian, Yoshiharu Y. Yamamoto, Mutsutomo Tokizawa, 2023, Proceedings of the National Academy of Sciences of the United States of America.

Combinatorial Effects of Cis-Regulatory Elements and Functions in Plants

Yoshiharu Y. Yamamoto, Okechukwu S. Ezeh, 2024, Reviews in Agricultural Science.