Bertil Schmidt

Yongchao Liu, Bertil Schmidt, B. Schmidt, 2014, 2014 IEEE 25th International Conference on Application-Specific Systems, Architectures and Processors.

Gossip: Efficient Communication Primitives for Multi-GPU Systems

Bertil Schmidt, Daniel Jünger, Christian Hundt, 2019, ICPP.

Graphical Workflow System for Modification Calling by Machine Learning of Reverse Transcription Signatures

Bertil Schmidt, Andreas Hildebrandt, Mark Helm, 2019, Front. Genet..

High-speed Multiple Sequence Alignment on a reconfigurable platform

Bertil Schmidt, Douglas L. Maskell, Darran Nathan, 2006, Int. J. Bioinform. Res. Appl..

Massively Parallel Huffman Decoding on GPUs

Bertil Schmidt, André Weißenberger, B. Schmidt, 2018, ICPP.

Parallel mutual information estimation for inferring gene regulatory networks on GPUs

Weiguo Liu, Bertil Schmidt, Wolfgang Müller-Wittig, 2011, BMC Research Notes.

Parallel Bioinformatics Algorithms for CUDA-Enabled GPUs

Yongchao Liu, Bertil Schmidt, Douglas L. Maskell, 2010 .

SAUCE: A Web-Based Automated Assessment Tool for Teaching Parallel Programming

Bertil Schmidt, Christian Hundt, Moritz Schlarb, 2015, Euro-Par Workshops.

Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data

Yongchao Liu, Jan Schröder, Bertil Schmidt, 2013, Bioinform..

Constructing large suffix trees on a computational grid

Bertil Schmidt, Chunxi Chen, B. Schmidt, 2006, J. Parallel Distributed Comput..

CUDA-Accelerated Alignment of Subsequences in Streamed Time Series Data

Bertil Schmidt, Elmar Schömer, Christian Hundt, 2014, 2014 43rd International Conference on Parallel Processing.

GSWABE: faster GPU‐accelerated sequence alignment with optimal alignment retrieval for short DNA sequences

Yongchao Liu, Bertil Schmidt, B. Schmidt, 2015, Concurr. Comput. Pract. Exp..

WarpDrive: Massively Parallel Hashing on Multi-GPU Nodes

Bertil Schmidt, Daniel Jünger, Christian Hundt, 2018, 2018 IEEE International Parallel and Distributed Processing Symposium (IPDPS).

Massively Parallel ANS Decoding on GPUs

Bertil Schmidt, André Weißenberger, 2019, ICPP.

Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model

Bertil Schmidt, Lars Wienbrandt, Jorge González-Domínguez, 2015, Int. J. High Perform. Comput. Appl..

Pattern Recognition in Bioinformatics

Bertil Schmidt, Shandar Ahmad, Madhu Chetty, 2010, Pattern Recognit. Lett..

FeatherCNN: Fast Inference Computation with TensorGEMM on ARM Architectures

Xiaoning Wang, Bertil Schmidt, Yu Qiao, 2020, IEEE Transactions on Parallel and Distributed Systems.

Preattentive Colour Features by Steerable Filters

Bertil Schmidt, Gerald Sommer, Udo Mahlmeister, 1995, DAGM-Symposium.

Parallel RNA sequence-structure alignment

Tong Liu, Bertil Schmidt, 2004, 18th International Parallel and Distributed Processing Symposium, 2004. Proceedings..

Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms

Vladimir Brusic, Bertil Schmidt, Lin Feng, 2007, BMC Bioinformatics.

A Morphological Approach to Hough Transform on an Instruction Systolic Array

Bertil Schmidt, Heiko Schröder, Manfred Schimmler, 1999, Comput. Artif. Intell..

Fast and efficient short read mapping based on a succinct hash index

Weiguo Liu, Bertil Schmidt, Haowen Zhang, 2018, BMC Bioinformatics.

S-Aligner: Ultrascalable Read Mapping on Sunway Taihu Light

Kai Xu, Weiguo Liu, Pavan Balaji, 2017, 2017 IEEE International Conference on Cluster Computing (CLUSTER).

Biological Sequence Analysis with Hidden Markov Models on an FPGA

Bertil Schmidt, Douglas L. Maskell, Timothy F. Oliver, 2005, Asia-Pacific Computer Systems Architecture Conference.

Comparative phyloinformatics of virus genes at micro and macro levels in a distributed computing environment

Bertil Schmidt, Timo Bretschneider, Dadabhai T. Singh, 2008, BMC Bioinformatics.

GPU-ClustalW: Using Graphics Hardware to Accelerate Multiple Sequence Alignment

Weiguo Liu, Bertil Schmidt, Gerrit Voss, 2006, HiPC.

GPU-accelerated exhaustive search for third-order epistatic interactions in case-control studies

Bertil Schmidt, Jorge González-Domínguez, B. Schmidt, 2015, J. Comput. Sci..

Pairwise DNA Sequence Alignment Optimization

Yongchao Liu, Bertil Schmidt, 2016 .

An Ultrafast Scalable Many-Core Motif Discovery Algorithm for Multiple GPUs

Yongchao Liu, Bertil Schmidt, Douglas L. Maskell, 2011, 2011 IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum.

Efficient and Accurate OTU Clustering with GPU-Based Sequence Alignment and Dynamic Dendrogram Cutting

Bertil Schmidt, Thuy-Diem Nguyen, Chee-Keong Kwoh, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Bit-parallel approximate pattern matching: Kepler GPU versus Xeon Phi

Yongchao Liu, Bertil Schmidt, Tuan Tu Tran, 2016, Parallel Comput..

Proceedings of the 2nd IAPR international conference on Pattern recognition in bioinformatics

Bertil Schmidt, Jagath C. Rajapakse, Gwenn Volkert, 2006 .

cuBool: Bit-Parallel Boolean Matrix Factorization on CUDA-Enabled Accelerators

Bertil Schmidt, Stefan Kramer, André Müller, 2018, 2018 IEEE 24th International Conference on Parallel and Distributed Systems (ICPADS).

Mapping of option pricing algorithms onto heterogeneous many-core architectures

Zhao Wang, Weiguo Liu, Ying Peng, 2017, The Journal of Supercomputing.

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions

Yongchao Liu, Bertil Schmidt, Adrianto Wirawan, 2013, BMC Bioinformatics.

SWhybrid: A Hybrid-Parallel Framework for Large-Scale Protein Sequence Database Search

Yongchao Liu, Weiguo Liu, Bertil Schmidt, 2017, 2017 IEEE International Parallel and Distributed Processing Symposium (IPDPS).

DySC: software for greedy clustering of 16S rRNA reads

Bertil Schmidt, Stefan Kramer, Zejun Zheng, 2012, Bioinform..

Special‐Purpose Computing for Biological Sequence Analysis

Bertil Schmidt, Heiko Schröder, B. Schmidt, 2005 .

A Reconfigurable Bloom Filter Architecture for BLASTN

Bertil Schmidt, Douglas L. Maskell, Yupeng Chen, 2009, ARCS.

CLOVE: classification of genomic fusions into structural variation events

Jan Schröder, Bertil Schmidt, Anthony T. Papenfuss, 2017, BMC Bioinformatics.

A Parallel Accelerator Architecture for Multimedia Video Compression

Bertil Schmidt, Manfred Schimmler, 1999, Euro-Par.

A fast hybrid short read fragment assembly algorithm

Bertil Schmidt, Simon J. Puglisi, Bryan Beresford-Smith, 2009, Bioinform..

Combining message-passing and inter-process communication in SMP-hybrid cluster for efficient parallel medical image analysis

Bertil Schmidt, Sean C. S. Tan, B. Schmidt, 2004, SPIE Optics + Photonics.

Bit-Parallel Approximate Pattern Matching on the Xeon Phi Coprocessor

Yongchao Liu, Bertil Schmidt, Tuan Tu Tran, 2014, 2014 IEEE 26th International Symposium on Computer Architecture and High Performance Computing.

Accomplishments and Challenges in High Performance Computing for Computational Biology

Feng Lin, Bertil Schmidt, Zhihua Du, 2006 .

Multiple protein sequence alignment with MSAProbs.

Yongchao Liu, Bertil Schmidt, B. Schmidt, 2014, Methods in molecular biology.

A hybrid architecture for bioinformatics

Bertil Schmidt, Heiko Schröder, Manfred Schimmler, 2002, Future Gener. Comput. Syst..

A Hybrid Architecture for Multimedia Processors

Bertil Schmidt, Heiko Schröder, 2001, Comput. Artif. Intell..

Neighbor-list-free molecular dynamics on sunway TaihuLight supercomputer

Guangwen Yang, Meng Zhang, Bertil Schmidt, 2020, PPoPP.

Manycore High-Performance Computing in Bioinformatics

Bertil Schmidt, Jean-Stéphane Varré, Mathieu Giraud, 2011 .

Development of distributed bioinformatics applications with GMP

Bertil Schmidt, Lin Feng, Amey V. Laud, 2004, Concurr. Pract. Exp..

Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA

Yongchao Liu, Bertil Schmidt, Douglas L. Maskell, 2009, 2009 IEEE International Symposium on Parallel & Distributed Processing.

CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform

Yongchao Liu, Bertil Schmidt, Douglas L. Maskell, 2012, Bioinform..

An area-efficient bit-serial integer and GF(2n) multiplier

Bertil Schmidt, Manfred Schimmler, Hans-Werner Lang, 2007 .

High Performance Database Searching with HMMer on FPGAs

Bertil Schmidt, Timothy F. Oliver, Leow Yuan Yeow, 2007, 2007 IEEE International Parallel and Distributed Processing Symposium.

CUSHAW Suite: Parallel and Efficient Algorithms for NGS Read Alignment

Yongchao Liu, Bertil Schmidt, B. Schmidt, 2017, Algorithms for Next-Generation Sequencing Data.

Bio-grid computing platform: parallel computing for protein alignment analysis

Bu-Sung Lee, Wentong Cai, Wei Jie, 2002 .

Parallelized Clustering of Protein Structures on CUDA-Enabled GPUs

Bertil Schmidt, Andreas Hildebrandt, Hoang-Vu Dang, 2014, 2014 22nd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing.

GPU-MEME: Using Graphics Hardware to Accelerate Motif Finding in DNA Sequences

Weiguo Liu, Chen Chen, Bertil Schmidt, 2008, PRIB.

mD3DOCKxb: An Ultra-Scalable CPU-MIC Coordinated Virtual Screening Framework

Kai Lu, Xiaoyu Zhang, Xiangke Liao, 2017, 2017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID).

CUDA-MEME: Accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units

Yongchao Liu, Weiguo Liu, Bertil Schmidt, 2010, Pattern Recognit. Lett..

Hierarchical Grid Computing for High-Performance Bioinformatics

Bertil Schmidt, Weiguo Liu, Chunxi Chen, 2007, Grid Computing for Bioinformatics and Computational Biology.

CUDA-BLASTP: Accelerating BLASTP on CUDA-Enabled Graphics Hardware

Weiguo Liu, Bertil Schmidt, Wolfgang Müller-Wittig, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Mapping of Hierarchical Parallel Genetic Algorithms for Protein Folding onto Computational Grids

Weiguo Liu, Bertil Schmidt, B. Schmidt, 2006, IEICE Trans. Inf. Syst..

BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures

Bertil Schmidt, Haidong Lan, Yuandong Chan, 2018, Bioinform..

SNVSniffer: An integrated caller for germline and somatic SNVs based on Bayesian models

Yongchao Liu, Srinivas Aluru, Bertil Schmidt, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Iterative sparse matrix–vector multiplication for accelerating the block Wiedemann algorithm over GF(2) on multi‐graphics processing unit systems

Bertil Schmidt, Hans Aribowo, Hoang-Vu Dang, 2013, Concurr. Comput. Pract. Exp..

HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data

Yongchao Liu, Jan Schröder, Bertil Schmidt, 2014, BMC Bioinformatics.

Solving the Bottleneck Problem in Bioinformatics Computing: An Architectural Perspective

Feng Lin, Bertil Schmidt, Heiko Schröder, 2007, J. VLSI Signal Process..

LightSpMV: Faster CSR-based sparse matrix-vector multiplication on CUDA-enabled GPUs

Yongchao Liu, Bertil Schmidt, B. Schmidt, 2015, 2015 IEEE 26th International Conference on Application-specific Systems, Architectures and Processors (ASAP).

REPLICA SELECTION FRAMEWORK FOR BIO-GRID COMPUTING

Bu-Sung Lee, Wentong Cai, Wei Jie, 2002 .

Parallel Discovery of Transcription Factor Binding Sites

Bertil Schmidt, Adrianto Wirawan, B. Schmidt, 2006, APCCAS 2006 - 2006 IEEE Asia Pacific Conference on Circuits and Systems.

Hybrid CPU/GPU Acceleration of Detection of 2-SNP Epistatic Interactions in GWAS

Bertil Schmidt, Lars Wienbrandt, Jorge González-Domínguez, 2014, Euro-Par.

SparseHC: A Memory-efficient Online Hierarchical Clustering Algorithm

Chee Keong Kwoh, Bertil Schmidt, Thuy-Diem Nguyen, 2014, ICCS.

Quality-score guided error correction for short-read sequencing data using CUDA

Weiguo Liu, Bertil Schmidt, Wolfgang Müller-Wittig, 2010, ICCS.

Prediction of low coverage prone regions for Illumina sequencing projects using a support vector machine

Bertil Schmidt, Guillaume Bourque, Zejun Zheng, 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Parallel RNA secondary structure prediction using stochastic context‐free grammars

Tong Liu, Bertil Schmidt, B. Schmidt, 2005, Concurr. Comput. Pract. Exp..

MASSIVELY PARALLEL SEQUENCE ANALYSIS WITH HIDDEN MARKOV MODELS

Bertil Schmidt, Heiko Schröder, 2002 .

Mapping of BLASTP Algorithm onto GPU Clusters

Yongchao Liu, Weiguo Liu, Bertil Schmidt, 2011, 2011 IEEE 17th International Conference on Parallel and Distributed Systems.

Streaming Algorithms for Biological Sequence Alignment on GPUs

Weiguo Liu, Bertil Schmidt, Gerrit Voss, 2007, IEEE Transactions on Parallel and Distributed Systems.

kmcEx: memory-frugal and retrieval-efficient encoding of counted k-mers

Peng Jiang, Liang Zhao, Limsoon Wong, 2019, Bioinform..

Performance analysis of computational biology applications on hierarchical Grid systems

Bertil Schmidt, Chunxi Chen, B. Schmidt, 2004, IEEE International Symposium on Cluster Computing and the Grid, 2004. CCGrid 2004..

A survey of desktop grid applications for e-science

Bertil Schmidt, 2007, Int. J. Web Grid Serv..

A hybrid short read mapping accelerator

Bertil Schmidt, Douglas L. Maskell, Yupeng Chen, 2013, BMC Bioinformatics.

Morphological Hough Transform on the Instruction Systolic Array

Bertil Schmidt, Heiko Schröder, Manfred Schimmler, 1997, Euro-Par.

Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters

Kai Xu, Weiguo Liu, Bertil Schmidt, 2016, BMC Bioinformatics.

A reconfigurable architecture for scanning biosequence databases

A. Prasad Vinod, Bertil Schmidt, Douglas L. Maskell, 2005, 2005 IEEE International Symposium on Circuits and Systems.

Accelerating bioinformatics applications via emerging parallel computing systems

Wu-chun Feng, Bertil Schmidt, Juan Antonio Gómez Pulido, 2015, TCBB.

Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA

Weiguo Liu, Bertil Schmidt, Wolfgang Müller-Wittig, 2009, 2009 IEEE International Symposium on Parallel & Distributed Processing.

C-Based Design Methodology for FPGA Implementation of ClustalW MSA

Bertil Schmidt, Douglas L. Maskell, Yan Lin Aung, 2007, PRIB.

Scalable Clustering by Iterative Partitioning and Point Attractor Representation

Bertil Schmidt, Stefan Kramer, Junming Shao, 2016, ACM Trans. Knowl. Discov. Data.

MetaCache: context-aware classification of metagenomic reads using minhashing

Bertil Schmidt, Andreas Hildebrandt, André Müller, 2017, Bioinform..

Long read alignment based on maximal exact match seeds

Yongchao Liu, Bertil Schmidt, B. Schmidt, 2012, Bioinform..

High performance biosequence database scanning on reconfigurable platforms

Bertil Schmidt, Timothy F. Oliver, 2004, 18th International Parallel and Distributed Processing Symposium, 2004. Proceedings..

MPI-HMMER-Boost: Distributed FPGA Acceleration

Bertil Schmidt, Xiandong Meng, John Paul Walters, 2007, J. VLSI Signal Process..

An FPGA aligner for short read mapping

Bertil Schmidt, Douglas L. Maskell, Yupeng Chen, 2012, 22nd International Conference on Field Programmable Logic and Applications (FPL).

XLCS: A New Bit-Parallel Longest Common Subsequence Algorithm on Xeon Phi Clusters

Bertil Schmidt, Kai Xu, Hao Zhang, 2019, 2019 IEEE 21st International Conference on High Performance Computing and Communications; IEEE 17th International Conference on Smart City; IEEE 5th International Conference on Data Science and Systems (HPCC/SmartCity/DSS).

Efficient Parallel Sort on AVX-512-Based Multi-Core and Many-Core Architectures

Bertil Schmidt, Hui Liu, Zekun Yin, 2019, 2019 IEEE 21st International Conference on High Performance Computing and Communications; IEEE 17th International Conference on Smart City; IEEE 5th International Conference on Data Science and Systems (HPCC/SmartCity/DSS).

Design of a Parallel Accelerator for Volume Rendering

Bertil Schmidt, B. Schmidt, 2000, Euro-Par.

Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems

Bertil Schmidt, Lars Wienbrandt, Manfred Schimmler, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

KPROC - An Instruction Systolic Architecture for Parallel Prefix Applications

Bertil Schmidt, Manfred Schimmler, 2000, Scalable Comput. Pract. Exp..

Techniques for algorithm design on the instruction systolic array

Bertil Schmidt, B. Schmidt, 1999 .

rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs

Bertil Schmidt, Andreas Hildebrandt, Christian Hundt, 2016, BMC Bioinformatics.

Next-generation sequencing: big data meets high performance computing.

Bertil Schmidt, Andreas Hildebrandt, B. Schmidt, 2017, Drug discovery today.

Protein Sequence Comparison on the Instruction Systolic Array

Bertil Schmidt, Heiko Schröder, Manfred Schimmler, 2001, PaCT.

High Speed Biological Sequence Analysis With Hidden Markov Models on Reconfigurable Platforms

Bertil Schmidt, Douglas L. Maskell, Timothy F. Oliver, 2009, IEEE Transactions on Information Technology in Biomedicine.

Accelerating large-scale biological database search on Xeon Phi-based neo-heterogeneous architectures

Weiguo Liu, Bertil Schmidt, Bingqiang Wang, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Accelerating short read mapping on an FPGA (abstract only)

Bertil Schmidt, Douglas L. Maskell, Yupeng Chen, 2012, FPGA '12.

Multi-threaded vectorized distance matrix computation on the CELL/BE and x86/SSE2 architectures

Chee Keong Kwoh, Bertil Schmidt, Adrianto Wirawan, 2010, Bioinform..

Multi-Objective Evolutionary Algorithm for Discovering Peptide Binding Motifs

Vladimir Brusic, Bertil Schmidt, Menaka Rajapakse, 2006, EvoWorkshops.

GEM: an elastic and translation-invariant similarity measure with automatic trend adjustment

Bertil Schmidt, Elmar Schömer, Hoang-Vu Dang, 2014, SAC.

A Parallel Algorithm for Error Correction in High-Throughput Short-Read Data on CUDA-Enabled Graphics Hardware

Weiguo Liu, Bertil Schmidt, Wolfgang Müller-Wittig, 2010, J. Comput. Biol..

Parallel and Space-Efficient Construction of Burrows-Wheeler Transform and Suffix Array for Big Genome Data

Yongchao Liu, Bertil Schmidt, Thomas Hankeln, 2016, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Pattern Recognition in Bioinformatics, Second IAPR International Workshop, PRIB 2007, Singapore, October 1-2, 2007, Proceedings

Bertil Schmidt, Jagath C. Rajapakse, Gwenn Volkert, 2007, PRIB.

Genome analysis SHREC : a short-read error correction method

Jan Schröder, Bertil Schmidt, Simon J. Puglisi, 2009 .

An Area-Efficient Bit-Serial Integer Multiplier

Bertil Schmidt, Manfred Schimmler, Hans-Werner Lang, 2003, VLSI.

CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

Yongchao Liu, Bertil Schmidt, Douglas L Maskell, 2010, BMC Research Notes.

A SIMD SOLUTION TO BIOSEQUENCE DATABASE SCANNING

Bertil Schmidt, Heiko Schröder, Thambipillai Srikanthan, 2002 .

Parallel RNA secondary structure prediction using stochastic context-free grammars: Research Articles

Bertil Schmidt, Tong Liu, 2005 .

Hyper customized processors for bio-sequence database scanning on FPGAs

Bertil Schmidt, Douglas L. Maskell, Timothy F. Oliver, 2005, FPGA '05.

High-speed and accurate color-space short-read alignment with CUSHAW2

Yongchao Liu, Bertil Schmidt, Bernt Popp, 2013 .

High performance protein sequence database scanning on the Cell Broadband Engine

Chee Keong Kwoh, Bertil Schmidt, Adrianto Wirawan, 2009, HiPC 2009.

Pairwise Distance Matrix Computation for Multiple Sequence Alignment on the Cell Broadband Engine

Chee Keong Kwoh, Bertil Schmidt, Adrianto Wirawan, 2009, ICCS.

Parallel Pattern-Based Systems for Computational Biology: A Case Study

Weiguo Liu, Bertil Schmidt, B. Schmidt, 2006, IEEE Transactions on Parallel and Distributed Systems.

Computing large-scale alignments on a multi-cluster

Bertil Schmidt, Chunxi Chen, B. Schmidt, 2003, 2003 Proceedings IEEE International Conference on Cluster Computing.

A Tunable Coarse-Grained Parallel Algorithm for Irregular Dynamic Programming Applications

Weiguo Liu, Bertil Schmidt, 2004, HiPC.

PUNAS: A Parallel Ungapped-Alignment-Featured Seed Verification Algorithm for Next-Generation Sequencing Read Alignment

Yongchao Liu, Kai Xu, Weiguo Liu, 2017, 2017 IEEE International Parallel and Distributed Processing Symposium (IPDPS).

Parallel detection of regulatory elements with gMP

Bertil Schmidt, Lin Feng, Amey V. Laud, 2003, Proceedings International Parallel and Distributed Processing Symposium.

CBESW: Sequence Alignment on the Playstation 3

Chee Keong Kwoh, Bertil Schmidt, Adrianto Wirawan, 2008, BMC Bioinformatics.

A Generic Parallel Pattern-Based System for Bioinformatics

Weiguo Liu, Bertil Schmidt, B. Schmidt, 2004, Euro-Par.

Large‐Scale Clustering of Short Reads for Metagenomics On GPUs

Chee Keong Kwoh, Bertil Schmidt, Thuy-Diem Nguyen, 2013 .

Massively parallel computation of atmospheric neutrino oscillations on CUDA-enabled accelerators

Bertil Schmidt, Christian Hundt, Sebastian Böser, 2019, Comput. Phys. Commun..

Performance Analysis of General-Purpose Computation on Commodity Graphics Hardware: A Case Study Using Bioinformatics

Weiguo Liu, Bertil Schmidt, Wolfgang Müller-Wittig, 2007, J. VLSI Signal Process..

Performance Predictions for General-Purpose Computation on GPUs

Weiguo Liu, Bertil Schmidt, Wolfgang Müller-Wittig, 2007, 2007 International Conference on Parallel Processing (ICPP 2007).

MSA-CUDA: Multiple Sequence Alignment on Graphics Processing Units with CUDA

Yongchao Liu, Bertil Schmidt, Douglas L. Maskell, 2009, 2009 20th IEEE International Conference on Application-specific Systems, Architectures and Processors.

Evaluation of GPU-based Seed Generation for Computational Genomics Using Burrows-Wheeler Transform

Yongchao Liu, Bertil Schmidt, B. Schmidt, 2012, 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum.

Bio-sequence database scanning on a GPU

Weiguo Liu, Bertil Schmidt, Gerrit Voss, 2006, Proceedings 20th IEEE International Parallel & Distributed Processing Symposium.

Deriving Matrix of Peptide-MHC Interactions in Diabetic Mouse by Genetic Algorithm

Lonce L. Wyse, Vladimir Brusic, Bertil Schmidt, 2005, IDEAL.

A bit-serial floating-point unit for a massively parallel system on a chip

Bertil Schmidt, Manfred Schimmler, Hans-Werner Lang, 2004, Parallel Algorithms Appl..

Accelerating BLASTP on the Cell Broadband Engine

Bertil Schmidt, Wolfgang Müller-Wittig, Huiliang Zhang, 2008, PRIB.

AFS: identification and quantification of species composition by metagenomic sequencing

Yongchao Liu, Bertil Schmidt, Thomas Hankeln, 2017, Bioinform..

Faster GPU-Accelerated Smith-Waterman Algorithm with Alignment Backtracking for Short DNA Sequences

Yongchao Liu, Bertil Schmidt, B. Schmidt, 2013, PPAM.

FPGA-based Acceleration of Detecting Statistical Epistasis in GWAS

Bertil Schmidt, Lars Wienbrandt, Manfred Schimmler, 2014, ICCS.

CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units

Yongchao Liu, Bertil Schmidt, Douglas L Maskell, 2009, BMC Research Notes.

Accurate Scanning of Sequence Databases with the Smith-Waterman Algorithm

Bertil Schmidt, Witold R. Rudnicki, Yongchao Liu, 2011 .

Second Workshop on using Emerging Parallel Architectures

Bertil Schmidt, Douglas Maskell, 2010, ICCS.

SAUCE: A web application for interactive teaching and learning of parallel programming

Bertil Schmidt, Christian Hundt, Moritz Schlarb, 2017, J. Parallel Distributed Comput..

Integrating FPGA acceleration into HMMer

Bertil Schmidt, Timothy F. Oliver, Leow Yuan Yeow, 2008, Parallel Comput..

Algorithms for Bioinformatics

Bertil Schmidt, B. Schmidt, 2010 .

Accelerating the Viterbi Algorithm for Profile Hidden Markov Models Using Reconfigurable Hardware

Bertil Schmidt, Douglas L. Maskell, Timothy F. Oliver, 2006, International Conference on Computational Science.

High performance protein sequence database scanning on the Cell Broadband Engine

Chee Keong Kwoh, Bertil Schmidt, Huiliang Zhang, 2009, Sci. Program..

Bioinformatics: High Performance Parallel Computer Architectures

Bertil Schmidt, B. Schmidt, 2010 .

CUDA-enabled Sparse Matrix-Vector Multiplication on GPUs using atomic operations

Bertil Schmidt, Hoang-Vu Dang, B. Schmidt, 2013, Parallel Comput..

Accelerating molecular dynamics simulations using Graphics Processing Units with CUDA

Weiguo Liu, Bertil Schmidt, Gerrit Voss, 2008, Comput. Phys. Commun..

Reconfigurable architectures for bio-sequence database scanning on FPGAs

Bertil Schmidt, Douglas L. Maskell, Timothy F. Oliver, 2005, IEEE Transactions on Circuits and Systems II: Express Briefs.

Fast Schedulability Analysis Using Commodity Graphics Hardware

Weiguo Liu, Bertil Schmidt, Samarjit Chakraborty, 2007, 13th IEEE International Conference on Embedded and Real-Time Computing Systems and Applications (RTCSA 2007).

PHENOTYPE GENOTYPE EXPLORATION ON A DESKTOP GPU GRID

Bertil Schmidt, Aarti Singh, Chen Chen, 2007, Grid 2007.

Parallel design pattern for computational biology and scientific computing applications

Weiguo Liu, Bertil Schmidt, 2003, 2003 Proceedings IEEE International Conference on Cluster Computing.

MetaCache-GPU: Ultra-Fast Metagenomic Classification

Bertil Schmidt, Daniel Jünger, Christian Hundt, 2021, ICPP.

Accelerating JPEG Decompression on GPUs

Bertil Schmidt, André Weißenberger, 2021, 2021 IEEE 28th International Conference on High Performance Computing, Data, and Analytics (HiPC).

RNACache: Fast Mapping of RNA-Seq Reads to Transcriptomes Using MinHashing

Bertil Schmidt, Stefan Niebler, André Müller, 2021, ICCS.

RabbitQC: high-speed scalable quality control for sequencing data

Bertil Schmidt, Yanjie Wei, Haidong Lan, 2020, Bioinform..