J. Sanford

发表

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes

Jennifer C. Drew, Nicholas G. Crawford, E. Jarvis, 2012, Genome Biology.

Frac-seq reveals isoform-specific recruitment to polyribosomes

Sol Katzman, N. Pourmand, M. Tariq, 2013, Genome research.

MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing

P. Radivojac, S. Mooney, D. Cooper, 2014, Genome Biology.

Pre-mRNA splicing: life at the centre of the central dogma

J. Cáceres, J. Sanford, Javier F Caceres, 2004, Journal of Cell Science.

Exon identity crisis: disease-causing mutations that disrupt the splicing code

Timothy Sterne-Weiler, J. Sanford, Timothy Sterne-Weiler, 2014, Genome Biology.

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts.

Matthew Mort, Sean D Mooney, David N Cooper, 2009, Genome research.

Concerted regulation of nuclear and cytoplasmic activities of SR proteins by AKT

Leandro Quadrana, A. Kornblihtt, M. Muñoz, 2005, Nature Structural &Molecular Biology.

Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling.

Son K. Pham, Ian T. Fiddes, Brendan L. O’Connell, 2017, Genome research.

Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling

Son K. Pham, Ian T. Fiddes, Brendan L. O’Connell, 2016, bioRxiv.

SR proteins are required for nematode trans-splicing in vitro.

J. Sanford, J. P. Bruzik, 1999, RNA.

Drosophila Imp iCLIP identifies an RNA assemblage coordinating F-actin formation

Anders Krogh, Jan Christiansen, Mireya Plass, 2015, Genome Biology.

Post-transcriptional gene regulation by the RNA binding protein IGF2BP3 is critical for MLL-AF4 mediated leukemogenesis

Sol Katzman, A. Jaiswal, J. Palanichamy, 2020, bioRxiv.

The role of exome sequencing in newborn screening for inborn errors of metabolism

Aashish N. Adhikari, R. Srinivasan, N. Risch, 2020, Nature Medicine.

Translational Control of C-terminal Src Kinase (Csk) Expression by PRL3 Phosphatase*

Zhon-Yin Zhang, R. Wek, J. Sanford, 2008, Journal of Biological Chemistry.

A rapid and efficient protocol to purify biologically active recombinant proteins from mammalian cells.

D. Cazalla, J. Cáceres, J. Sanford, 2005, Protein expression and purification.

Augmentation of nonsense mediated decay by rapamycin

Hanane Ennajdaoui, R. Martinez-Nunez, T. Sanchez-Elsner, 2015, bioRxiv.

Modulation of nonsense mediated decay by rapamycin

Sol Katzman, Hanane Ennajdaoui, K. Deinhardt, 2016, Nucleic acids research.

The Wilms' tumour protein (WT1) shuttles between nucleus and cytoplasm and is present in functional polysomes.

M. Niksic, J. Cáceres, J. Sanford, 2003, Human molecular genetics.

Modulates the Interaction of Invasion-Associated Transcripts with

B. Blencowe, Sol Katzman, L. Penalva, 2016 .

MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing

P. Radivojac, S. Mooney, D. Cooper, 2014, Genome Biology.

A novel role for shuttling SR proteins in mRNA translation.

N. Gray, J. Cáceres, J. Sanford, 2004, Genes & development.

Splicing factor SRSF1 expands the regulatory logic of microRNA expression

Michael D. Stone, J. Sanford, Marija Dargyte, 2020, bioRxiv.

HNRNPA 1 promotes recognition of splice site decoys by U 2 AF 2 in vivo

Sol Katzman, M. Haeussler, M. Toloue, 2018 .

From mechanisms to therapy: RNA processing’s impact on human genetics

L. Penalva, J. Sanford, 2017, Human Genetics.

HNRNPA1 promotes recognition of splice site decoys by U2AF2 in vivo

Sol Katzman, M. Haeussler, M. Toloue, 2017, bioRxiv.

The RNAissance family: SR proteins as multifaceted regulators of gene expression

Jonathan M. Howard, J. Sanford, 2015, Wiley interdisciplinary reviews. RNA.

Loss of exon identity is a common mechanism of human inherited disease.

D. Cooper, M. Mort, Timothy Sterne-Weiler, 2011, Genome research.

Identification of Nuclear and Cytoplasmic mRNA Targets for the Shuttling Protein SF2/ASF

Xin Wang, Jeremy R. Sanford, Xin Wang, 2008, PloS one.

Multiple roles of arginine/serine-rich splicing factors in RNA processing.

J. Ellis, J. Cáceres, J. Sanford, 2005, Biochemical Society transactions.

Reversible phosphorylation differentially affects nuclear and cytoplasmic functions of splicing factor 2/alternative splicing factor.

D. Cazalla, J. Ellis, J. Cáceres, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Site identification in high-throughput RNA-protein interaction data

Andrew D. Smith, Mei Qiao, Emad Bahrami Samani, 2012, Bioinform..

Alveolar progenitor differentiation and lactation depends on paracrine inhibition of notch via ROBO1/CTNNB1/JAG1

Sol Katzman, Sharmila Chatterjee, L. Hinck, 2021, Development.

RNA-binding protein IGF2BP3 targeting of oncogenic transcripts promotes hematopoietic progenitor proliferation.

Sol Katzman, G. Basso, M. Toloue, 2016, The Journal of clinical investigation.

IGF2BP3 Modulates the Interaction of Invasion-Associated Transcripts with RISC.

B. Blencowe, Sol Katzman, L. Penalva, 2016, Cell reports.

Multiple roles of the SR protein family in splicing regulation.

J. Cáceres, J. Sanford, D. Longman, 2003, Progress in molecular and subcellular biology.

Regulation of SR protein localization during development

J. Sanford, J. P. Bruzik, James P. Bruzik, 2001, Proceedings of the National Academy of Sciences of the United States of America.

A potential role for SARS-CoV-2 small viral RNAs in targeting host microRNAs and modulating gene expression

Sol Katzman, W. Lipkin, N. Mishra, 2022, Scientific reports.

The splicing factor SF2/ASF regulates translation initiation by enhancing phosphorylation of 4E-BP1.

J. Cáceres, J. Sanford, G. Michlewski, 2008, Molecular cell.

Suppression of HIV-1 Nef translation by Sam68 mutant-induced stress granules and nef mRNA sequestration.

Johnny J. He, J. Henao-Mejia, Ying Liu, 2009, Molecular cell.

The RNA-binding protein IGF2BP3 is critical for MLL-AF4-mediated leukemogenesis

Sol Katzman, D. Rao, J. Sanford, 2021, Leukemia.

Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing

Guohua Wang, Weixing Feng, Milan Radovich, 2009, BMC Genomics.

Model-based prediction of cis-acting RNA elements regulating tissue-specific alternative splicing

Yunlong Liu, Xin Wang, Guohua Wang, 2008, 2008 8th IEEE International Conference on BioInformatics and BioEngineering.

IGF 2 BP 3 Modulates the In teraction of Invasion-Associated Transcripts with RISC Graphical Abstract Highlights

B. Blencowe, Sol Katzman, L. Penalva, 2016 .

Splicing factor TRA2B is required for neural progenitor survival

Jacqueline M. Roberts, B. Wirth, Hanane Ennajdaoui, 2014, The Journal of comparative neurology.

DNA Methyltransferase protein synthesis is reduced in CXXC finger protein 1-deficient embryonic stem cells.

D. Skalnik, R. Wek, J. Sanford, 2009, DNA and cell biology.

Predicting sequence and structural specificities of RNA binding regions recognized by splicing factor SRSF1

Xin Wang, Liran Juan, Yunlong Liu, 2011, BMC Genomics.

Studying Isoform-Specific mRNA Recruitment to Polyribosomes with Frac-seq.

R. Martinez-Nunez, J. Sanford, 2016, Methods in molecular biology.

Developmental regulation of SR protein phosphorylation and activity.

J. Sanford, J. P. Bruzik, 1999, Genes & development.

A method for campus-wide SARS-CoV-2 surveillance at a large public university

E. L. Miller, E. Kephart, A. M. Kilpatrick, 2021, PloS one.

Isoform-specific translational control is evolutionarily conserved in primates

D. Haussler, S. Salama, Sol Katzman, 2023, bioRxiv.

Distinct oncogenic phenotypes in hematopoietic specific deletions of Trp53

Sol Katzman, Thilini R. Fernando, D. Rao, 2023, Scientific reports.

From mechanisms to therapy: RNA processing’s impact on human genetics

L. Penalva, J. Sanford, 2017, Human Genetics.

Isoform-specific translational control is evolutionarily conserved in primates

D. Haussler, S. Salama, Sol Katzman, 2023, bioRxiv.

Drosophila Imp iCLIP identifies an RNA assemblage coordinating F-actin formation

A. Krogh, F. Nielsen, J. Christiansen, 2015, Genome Biology.

Edinburgh Research Explorer Identification of Nuclear and Cytoplasmic mRNA Targets for the Shuttling Protein SF2/ASF

Xin Wang, J. Cáceres, Jamie A. Hackett, 2022 .

xIP-seq Platform: An Integrative Framework for High-Throughput Sequencing Data Analysis

Mingxiang Teng, Xin Wang, Guohua Wang, 2009, 2009 Ohio Collaborative Conference on Bioinformatics.

Using RNase sequence specificity to refine the identification of RNA-protein binding regions

Guohua Wang, Xin Wang, Sean D Mooney, 2008, BMC Genomics.

Identification of Nuclear and Cytoplasmic mRNA Targets for the Shuttling Protein SF2/ASF

Xin Wang, Jamie A. Hackett, J. Sanford, 2008 .

Identification of Nuclear and Cytoplasmic mRNA Targets for the Shuttling Protein SF2/ASF

S. Maas, Xin Wang, J. Cáceres, 2008, PloS one.

Drosophila Imp iCLIP identifies an RNA assemblage coordinating F-actin formation

A. Krogh, F. Nielsen, J. Christiansen, 2015, Genome Biology.

Rescue of blood coagulation Factor VIII exon-16 mis-splicing by antisense oligonucleotides

Michael D. Stone, J. Sanford, Catherine Oh, 2023, bioRxiv.

Exon identity crisis: disease-causing mutations that disrupt the splicing code

Timothy Sterne-Weiler, J. Sanford, 2014, Genome Biology.

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts.

S. Mooney, D. Cooper, M. Mort, 2009, Genome research.

Identification of Nuclear and Cytoplasmic mRNA Targets for the Shuttling Protein SF2/ASF

J. Cáceres, J. Sanford, Pedro Coutinho, 2008, PloS one.

RNA-binding protein IGF2BP3 targeting of oncogenic transcripts promotes hematopoietic progenitor proliferation.

Sol Katzman, G. Basso, M. Toloue, 2016, The Journal of clinical investigation.

Prioritizing single-nucleotide variations that potentially regulate alternative splicing

Mingxiang Teng, Guohua Wang, Yunlong Liu, 2011, BMC proceedings.