M. A. Wiel

发表

Regional differences in gene expression and promoter usage in aged human brains

Abdullah M. Khamis, Piero Carninci, Hazuki Takahashi, 2013, Neurobiology of Aging.

Nonparametric testing for DNA copy number induced differential mRNA gene expression.

M. A. Wiel, W. V. Wieringen, 2009 .

A Test for Partial Differential Expression

Aad van der Vaart, Wessel N. van Wieringen, Mark A. van de Wiel, 2008 .

Incorporating prior information and borrowing information in high-dimensional sparse regression using the horseshoe and variational Bayes.

G. B. Kpogbezan, A. V. D. Vaart, W. N. Wieringen, 2019, 1901.10217.

Exploratory Factor Analysis of Pathway Copy Number Data with an Application Towards the Integration with Gene Expression Data

M. A. Wiel, W. V. Wieringen, 2011, J. Comput. Biol..

Penalized differential pathway analysis of integrative oncogenomics studies.

M. A. Wiel, W. V. Wieringen, 2014 .

Chapter 6 CSE 1 L , DIDO 1 and RBM 39 in colorectal adenoma to carcinoma progression

F. Pontén, G. Meijer, B. Carvalho, 2012 .

CSE1L, DIDO1 and RBM39 in colorectal adenoma to carcinoma progression

F. Pontén, G. Meijer, B. Carvalho, 2012, Cellular Oncology.

The Spectral Condition Number Plot for Regularization Parameter Determination

Wessel N. van Wieringen, Mark A. van de Wiel, Carel F.W. Peeters, 2016, 1608.04123.

Preprocessing and downstream analysis of microarray DNA copy number profiles

Franck Picard, Wessel N. van Wieringen, Bauke Ylstra, 2011, Briefings Bioinform..

High-resolution array-CGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer

Y. Wang, I. O. Ellis, S. Tavare, 2007 .

CGHcall: Calling aberrations for array CGH tumor proﬁles.

Wessel N. van Wieringen, Bauke Ylstra, Kyung In Kim, 2008 .

Smoothing waves in array CGH tumor profiles

Marieke E. Timmerman, Paul H. C. Eilers, Björn Menten, 2009, Bioinform..

CGHMultiArray: exact P-values for multi-array comparative genomic hybridization data

Ruud H. Brakenhoff, Bauke Ylstra, Mark A. van de Wiel, 2005, Bioinform..

Pla 2 g 2 a attenuates colon tumorigenesis in azoxymethane-treated C 57 BL / 6 mice ; expression studies reveal Pla 2 g 2 a target genes and pathways

G. Meijer, J. Peham, R. Cormier, 2014 .

Altered microRNA expression associated with chromosomal changes contributes to cervical carcinogenesis

C. C. Sage, R. Agami, G. Kenter, 2013, Oncogene.

Modeling Association Between Dna Copy Number and Gene Expression with Constrained Piecewise Linear Regression Splines

Wessel N. van Wieringen, Mark A. van de Wiel, Aad W. van der Vaart, 2013, 1312.1795.

Identification of novel genes related to primary nodal diffuse large B-cell lymphomas with poor outcome by array CGH and expression integration analysis

Sjoerd J. Vosse, B. Ylstra, M. Tijssen, 2007 .

CGHregions: Dimension Reduction for Array CGH Data with Minimal Information Loss

Wessel N. van Wieringen, Mark A. van de Wiel, M. A. Wiel, 2007 .

Genome-wide DNA copy number alterations in head and neck squamous cell carcinomas with or without oncogene-expressing human papillomavirus

P J F Snijders, C. R. Leemans, P. Snijders, 2006, Oncogene.

NMD inhibition fails to identify tumour suppressor genes in microsatellite stable gastric cancer cell lines

B. Ylstra, G. Meijer, B. Carvalho, 2009, BMC Medical Genomics.

A Bayesian accelerated failure time model for interval censored three-state screening outcomes

Thomas Klausch, Johannes Berkhof, Mark A. van de Wiel, 2021, The Annals of Applied Statistics.

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

B. Ylstra, O. Krijgsman, G. Leday, 2012, BMC Bioinformatics.

tigaR: integrative significance analysis of temporal differential gene expression induced by genomic abnormalities

Ruud H. Brakenhoff, Wessel N. van Wieringen, Mark A. van de Wiel, 2014, BMC Bioinformatics.

Multiple putative oncogenes at the chromosome 20q amplicon contribute to colorectal adenoma to carcinoma progression

E. Schröck, M. Cuesta, M. A. van de Wiel, 2008, Gut.

MiR-17-92 cluster is associated with 13q gain and c-myc expression during colorectal adenoma to adenocarcinoma progression

M. A. van de Wiel, G. Meijer, B. Carvalho, 2009, British Journal of Cancer.

Normalized , Segmented or Called aCGH Data ?

Mark A. van de Wiel, Bauke Ylstra, Wessel N. van Wieringen, 2009 .

GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes

Stef van Lieshout, M. A. van de Wiel, B. Ylstra, 2016, F1000Research.

Genomic profiling identifies common HPV-associated chromosomal alterations in squamous cell carcinomas of cervix and head and neck

C. Meijer, P. Snijders, B. Ylstra, 2009 .

Molecular Characterization of Locally Relapsed Head and Neck Cancer after Concomitant Chemoradiotherapy

C. R. Leemans, M. A. van de Wiel, T. Poli, 2019, Clinical Cancer Research.

A prognostic classifier for patients with colorectal cancer liver metastasis, based on AURKA, PTGS2 and MMP9

M. A. van de Wiel, O. Hoekstra, G. Meijer, 2015, Oncotarget.

BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data

B. Ylstra, Yongsoo Kim, J. Garcia-Vallejo, 2020 .

DNA copy number profiling reveals extensive genomic loss in hereditary BRCA1 and BRCA2 ovarian carcinomas

M. Urioste, J. Benítez, M. A. van de Wiel, 2013, British Journal of Cancer.

Profiling of apoptosis genes allows for clinical stratification of primary nodal diffuse large B‐cell lymphomas

M. A. van de Wiel, B. Ylstra, G. Ossenkoppele, 2007, British journal of haematology.

Expression of Pla2g2a prevents carcinogenesis in Muc2‐deficient mice

A. Velcich, I. Matīse, R. Cormier, 2008, Cancer science.

The spectral condition number plot for regularization parameter evaluation

W. N. Wieringen, C. Peeters, M. A. Wiel, 2019, Computational Statistics.

Genomic profiling identifies common HPV-associated chromosomal alterations in squamous cell carcinomas of cervix and head and neck

C. R. Leemans, C. Meijer, P. Snijders, 2009, BMC Medical Genomics.

MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing

M. A. van de Wiel, B. Ylstra, H. Verheul, 2015, Oncogenesis.

Genomic profiling identifies common HPV-associated chromosomal alterations in squamous cell carcinomas of cervix and head and neck

C. R. Leemans, C. Meijer, P. Snijders, 2009, BMC Medical Genomics.

PLRS: a flexible tool for the joint analysis of DNA copy number and mRNA expression data

G. Leday, M. A. Wiel, 2013, Bioinform..

Guiding adaptive shrinkage by co-data to improve regression-based prediction and feature selection

M. A. Wiel, W. V. Wieringen, 2024, 2405.04917.

CGHcall: calling aberrations for array CGH tumor profiles

Sjoerd J. Vosse, B. Ylstra, M. A. Wiel, 2007, Bioinform..