Katarzyna Knop

发表

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification

Matthew T. Parker, G. Barton, A. Hall, 2020, eLife.

mirEX 2.0 - an integrated environment for expression profiling of plant microRNAs

Wojciech M. Karlowski, Jakub Dolata, Sylwia Alaba, 2015, BMC Plant Biology.

Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses

W. Karłowski, A. Jarmołowski, Z. Szweykowska-Kulinska, 2015, Front. Plant Sci..

Nanopore direct RNA sequencing maps an Arabidopsis N6 methyladenosine epitranscriptome

Matthew T. Parker, G. Barton, A. Hall, 2019, bioRxiv.

Posttranscriptional coordination of splicing and miRNA biogenesis in plants

J. Dolata, A. Jarmołowski, Z. Szweykowska-Kulinska, 2017, Wiley interdisciplinary reviews. RNA.

Arabidopsis thaliana microRNA162 level is posttranscriptionally regulated via splicing and polyadenylation site selection.

A. Jarmołowski, Z. Szweykowska-Kulinska, Katarzyna Knop, 2016, Acta biochimica Polonica.

A stable tRNA-like molecule is generated from the long noncoding RNA GUT15 in Arabidopsis

W. Karłowski, A. Jarmołowski, Z. Szweykowska-Kulinska, 2018, RNA biology.

miRNA Detection by Stem-Loop RT-qPCR in Studying microRNA Biogenesis and microRNA Responsiveness to Abiotic Stresses.

A. Smoczyńska, A. Jarmołowski, Z. Szweykowska-Kulinska, 2019, Methods in molecular biology.

Active 5΄ splice sites regulate the biogenesis efficiency of Arabidopsis microRNAs derived from intron-containing genes

J. Borst, Z. Szweykowska-Kulinska, Katarzyna Knop, 2016, Nucleic acids research.

1 1 m 6 A modification of U 6 snRNA modulates 2 usage of two major classes of pre-mRNA 5 ’ 3 splice site 4 5

G. Barton, Jelena Kusakina, G. Simpson, 2022 .

Chromosome evolution and the genetic basis of agronomically important traits in greater yam

Matthew T. Parker, G. Barton, S. Shu, 2021, Nature Communications.

m6A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5’ splice site

Matthew T. Parker, G. Barton, Jelena Kusakina, 2022, bioRxiv.

mirEX 2.0 - an integrated environment for expression profiling of plant microRNAs

W. Karłowski, J. Dolata, Z. Szweykowska-Kulinska, 2015, BMC Plant Biology.

Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA

Matthew T. Parker, G. Barton, J. Beynon, 2020, bioRxiv.

Making a mark: the role of RNA modifications in plant biology

Matthew T. Parker, G. Simpson, Katarzyna Knop, 2020, The Biochemist.

Widespread premature transcription termination of Arabidopsis 1 thaliana NLR genes by the spen protein FPA 2 3 4 5 6

Katarzyna Knop, Vasiliki Zacharaki, Matthew T Parker, 2020 .

2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

Matthew T. Parker, G. Barton, G. Simpson, 2021, Genome Biology.

m6A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5' splice site

Jelena Kusakina, Brendan Davies, S. Fica, 2022 .

2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

Matthew T. Parker, G. Barton, G. Simpson, 2021, Genome Biology.

m 6 A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5' splice site

Jelena Kusakina, Brendan Davies, S. Fica, 2022 .

m6A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5' splice site

Jelena Kusakina, Brendan Davies, S. Fica, 2022 .