Nikoleta A Tzioutziou

发表

TranSuite: a software suite for accurate translation and characterization of transcripts

John W. S. Brown, Runxuan Zhang, Wenbin Guo, 2020, bioRxiv.

Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs

John W. S. Brown, Runxuan Zhang, C. Hornyik, 2019, Front. Plant Sci..

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

H. Hirt, Yamile Marquez, John W. S. Brown, 2017, Nucleic acids research.

AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data

H. Hirt, Yamile Marquez, John W. S. Brown, 2016, bioRxiv.

AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript‐specific expression in Arabidopsis thaliana

E. Eyras, Yamile Marquez, John W. S. Brown, 2015, The New phytologist.

Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome[CC-BY]

John W. S. Brown, Runxuan Zhang, Heather Knight, 2018, Plant Cell.

Deposited in DRO : 08 November 2018 Version of attached

Runxuan Zhang, H. G. Nimmo, Wenbin Guo, 2018 .

Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome[CC-BY]

John W. S. Brown, Runxuan Zhang, Heather Knight, 2018, Plant Cell.

How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY)

John W. S. Brown, C. Simpson, Runxuan Zhang, 2018, Plant, cell & environment.

3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

I. Milne, John W. S. Brown, Runxuan Zhang, 2020, RNA biology.

A powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

Iain Milne, Gordon Stephen, Wenbin Guo, 2019, bioRxiv.

Experimental Design for Time-Series RNA-Seq Analysis of Gene Expression and Alternative Splicing.

John W. S. Brown, Runxuan Zhang, H. G. Nimmo, 2021, Methods in molecular biology.

Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size

Ping Lin, Wenbin Guo, John W. S. Brown, 2017, BMC Systems Biology.

REVEILLE2 Thermosensitive Splicing: A Molecular Basis for the Integration of Nocturnal Temperature Information by the Arabidopsis Circadian Clock

M. Jones, John W. S. Brown, Runxuan Zhang, 2023, bioRxiv.