Yichuan Liu

发表

PennSeq: accurate isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distribution

Mingyao Li, M. Reilly, Hongzhe Li, 2013, Nucleic acids research.

A COMMUNITY OVERLAP STRATEGY REVEALS CENTRAL GENES AND NETWORKS IN HEART FAILURE AUTHORS

Kevin S. Smith, Kevin Scott Smith, Mingyao Li, 2016 .

Regulation of Janus Kinase 2 by an Inflammatory Bowel Disease Causal Non-coding Single Nucleotide Polymorphism.

H. Hakonarson, S. Grant, J. Bradfield, 2020, Journal of Crohn's & colitis.

Mitochondrial DNA haplogroups and susceptibility to neuroblastoma.

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2020, Journal of the National Cancer Institute.

Common and Rare Genetic Risk Factors Converge in Protein Interaction Networks Underlying Schizophrenia

H. Hakonarson, Qingqin S. Li, P. Sleiman, 2018, Front. Genet..

Combining targeted panel-based resequencing and copy-number variation analysis for the diagnosis of inherited syndromic retinopathies and associated ciliopathies

H. Hakonarson, L. Tian, M. Cortón, 2018, Scientific Reports.

Burden of rare coding variants reveals genetic heterogeneity between obese and non-obese asthma patients in the African American population

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2022, Respiratory Research.

Machine Learning Reduced Gene/Non-Coding RNA Features That Classify Schizophrenia Patients Accurately and Highlight Insightful Gene Clusters

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2020, medRxiv.

Role of the ADCY9 gene in cardiac abnormalities of the Rubinstein-Taybi syndrome

H. Hakonarson, H. Qu, L. Tian, 2019, Orphanet Journal of Rare Diseases.

Genetic correlations between COVID-19 and a variety of traits and diseases

J. Glessner, H. Hakonarson, H. Qu, 2020, The Innovation.

Application of deep learning algorithm on whole genome sequencing data uncovers structural variants associated with multiple mental disorders in African American patients

J. Glessner, H. Hakonarson, H. Qu, 2022, Molecular Psychiatry.

Corrigendum

Shau-ku Huang, Yichuan Liu, Hao Chen, 2021, FEBS letters.

Association of Inherited Copy Number Variation in ADAM3A and ADAM5 Pseudogenes with Oropharynx Cancer Risk and Outcome

R. Pellegrino, Yichuan Liu, C. Torricelli, 2022, Genes.

Common variants in MMP20 at 11q22.2 predispose to 11q deletion and neuroblastoma risk

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2017, Nature Communications.

The Long Noncoding RNA Landscape in Amygdala Tissues from Schizophrenia Patients

H. Hakonarson, R. Gur, Tian Tian, 2018, EBioMedicine.

Non-coding RNA dysregulation in the amygdala region of schizophrenia patients contributes to the pathogenesis of the disease

H. Hakonarson, R. Gur, C. Hahn, 2018, Translational Psychiatry.

Identification of risk variants related to malignant tumors in children with birth defects by whole genome sequencing

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2022, Biomarker Research.

Combining targeted panel-based resequencing and copy-number variation analysis for the diagnosis of inherited syndromic retinopathies and associated ciliopathies

H. Hakonarson, M. Cortón, C. Ayuso, 2018, Scientific Reports.

RNA-Seq identifies novel myocardial gene expression signatures of heart failure.

Euan A Ashley, Sridhar Hannenhalli, Thomas P Cappola, 2015, Genomics.

Mapping Splicing Quantitative Trait Loci in RNA-Seq

Mingyao Li, Cheng Jia, Yu Hu, 2015, Cancer informatics.

Mapping Splicing Quantitative Trait Loci in RNA-Seq

Mingyao Li, Cheng Jia, Yu Hu, 2014, Cancer informatics.

Common variants at 5q33.1 predispose to migraine in African-American children

H. Hakonarson, F. Mentch, R. Pellegrino, 2018, Journal of Medical Genetics.

Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2021, Genes.

FLNC and MYLK2 gene mutations in a Chinese family with different phenotypes of cardiomyopathy

H. Hakonarson, H. Qu, Y. Liu, 2020, medRxiv.

Copy number variation in CEP57L1 predisposes to congenital absence of bilateral ACL and PCL ligaments

J. Glessner, H. Hakonarson, Yiran Guo, 2015, Human Genomics.

Copy number variation in CEP57L1 predisposes to congenital absence of bilateral ACL and PCL ligaments

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2015, Human Genomics.

Bayesian integration of genetics and epigenetics detects causal regulatory SNPs underlying expression variability

Shane T. Jensen, H. Hakonarson, Mingyao Li, 2015, Nature Communications.

Pparγ1 Facilitates ErbB2-Mammary Adenocarcinoma in Mice

W. Tong, A. Kossenkov, Chenguang Wang, 2021, Cancers.

Expansion of Schizophrenia Gene Network Knowledge Using Machine Learning Selected Signals From Dorsolateral Prefrontal Cortex and Amygdala RNA-seq Data

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2022, Frontiers in Psychiatry.

Evaluating the Impact of Sequencing Depth on Transcriptome Profiling in Human Adipose

Mingyao Li, M. Reilly, B. Gregory, 2013, PloS one.

Integrative genomics identifies 7p11.2 as a novel locus for fever and clinical stress response in humans.

Mingyao Li, E. Schadt, M. Reilly, 2015, Human molecular genetics.

Dual-targeting strategy using trastuzumab and lapatinib in a patient with HER2 gene amplification in recurrent metachronous metastatic gallbladder carcinoma

Xue Wu, Y. Shao, Yichuan Liu, 2019, The Journal of international medical research.

A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2021, The Journal of allergy and clinical immunology.

Saudi Arabian CML patient with a novel four‐way translocation at t(9;22;5;2)(q34;q11.2;p13;q44)

H. Hakonarson, P. Sleiman, W. Dridi, 2022, Molecular genetics & genomic medicine.

Pathogenic variant in EPHB4 results in central conducting lymphatic anomaly

H. Hakonarson, R. Chiavacci, C. Seiler, 2018, Human molecular genetics.

Testing Genetic Association With Rare Variants in Admixed Populations

Yun Li, Leslie Lange, Mingyao Li, 2013, Genetic epidemiology.

ARAF recurrent mutation causes central conducting lymphatic anomaly treatable with a MEK inhibitor

H. Hakonarson, R. Chiavacci, C. Seiler, 2019, Nature Medicine.

Application of Whole Exome Sequencing in Six Families with an Initial Diagnosis of Autosomal Dominant Retinitis Pigmentosa: Lessons Learned

H. Hakonarson, Yiran Guo, Jianguo Zhang, 2015, PloS one.

Non-coding structural variation differentially impacts attention-deficit hyperactivity disorder (ADHD) gene networks in African American vs Caucasian children

J. Glessner, H. Hakonarson, H. Qu, 2020, Scientific Reports.

Tissue-Specific RNA-Seq in Human Evoked Inflammation Identifies Blood and Adipose LincRNA Signatures of Cardiometabolic Diseases

Mingyao Li, M. Reilly, B. Gregory, 2014, Arteriosclerosis, thrombosis, and vascular biology.

Erratum: A genome-wide association study of anorexia nervosa suggests a risk locus implicated in dysregulated leptin signaling

H. Hakonarson, Cecilia Kim, Yiran Guo, 2017, Scientific Reports.

A genome-wide association study of anorexia nervosa suggests a risk locus implicated in dysregulated leptin signaling

John J. Connolly, I. Ntalla, E. Zeggini, 2017, Scientific Reports.

Comprehensive analysis of gene expression in human retina and supporting tissues

Hakon Hakonarson, Christine A Curcio, Lifeng Tian, 2014, Human molecular genetics.

Microduplications at the 15q11.2 BP1-BP2 locus are enriched in patients with anorexia nervosa.

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2019, Journal of psychiatric research.

Expression Pattern of the SARS-CoV-2 Entry Genes ACE2 and TMPRSS2 in the Respiratory Tract

H. Hakonarson, H. Qu, Yichuan Liu, 2020, Viruses.

Mitochondrial DNA haplogroups and risk of attention deficit and hyperactivity disorder in European Americans

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2020, Translational Psychiatry.

A functional synonymous coding variant in the IL1RN gene is associated with survival in septic shock.

Mingyao Li, M. Reilly, J. Ferguson, 2014, American journal of respiratory and critical care medicine.

Improved Outcomes in Patients with 22q11.2 Deletion Syndrome and Diagnosis of Interrupted Aortic Arch Prior to Birth Hospital Discharge, a Retrospective Study

E. Zackai, H. Hakonarson, J. Rychik, 2022, Genes.

Circulating and Tissue Matricellular RNA and Protein Expression in Calcific Aortic Valve Disease.

D. Rader, R. Levy, Zhuyin Li, 2020, Physiological genomics.

A new bohaiornithid-like bird from the Lower Cretaceous of China fills a gap in enantiornithine disparity

M. Kundrát, Q. Ji, A. Cau, 2022, Journal of Paleontology.

RNA Sequencing in Hypoxia-Adapted T98G Glioblastoma Cells Provides Supportive Evidence for IRE1 as a Potential Therapeutic Target

H. Hakonarson, Yichuan Liu, R. Buono, 2023, Genes.

Common variants in MMP20 at 11q22.2 predispose to 11q deletion and neuroblastoma risk

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2017, Nature Communications.

Improved genetic risk scoring algorithm for type 1 diabetes prediction

John J. Connolly, Joseph T. Glessner, J. Glessner, 2022, Pediatric diabetes.

Association of novel rare coding variants with juvenile idiopathic arthritis

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2021, Annals of the Rheumatic Diseases.

MONTAGE: a new tool for high-throughput detection of mosaic copy number variation

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2021, BMC genomics.

Deep learning prediction of attention-deficit hyperactivity disorder in African Americans by copy number variation

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2021, Experimental biology and medicine.

Interpretation of Maturity-Onset Diabetes of the Young Genetic Variants Based on American College of Medical Genetics and Genomics Criteria: Machine-Learning Model Development

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2020, JMIR Biomedical Engineering.

Interpretation of Maturity-Onset Diabetes of the Young Genetic Variants Based on American College of Medical Genetics and Genomics Criteria: Machine-Learning Model Development (Preprint)

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2020 .

Association of Rare Recurrent Copy Number Variants With Congenital Heart Defects Based on Next-Generation Sequencing Data From Family Trios

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2019, Front. Genet..

Expression Pattern of the SARS-CoV-2 Receptor ACE2 and TMPRSS2 in the Respiratory Tract

H. Hakonarson, H. Qu, Yichuan Liu, 2020 .

Erratum to: Copy number variation in CEP57L1 predisposes to congenital absence of bilateral ACL and PCL ligaments

J. Glessner, H. Hakonarson, Yiran Guo, 2015, Human genomics.

Genome-wide association study reveals two loci for serum magnesium concentrations in European-American children

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2015, Scientific Reports.

Rare neurological manifestations in a Saudi Arabian patient with Ehlers–Danlos syndrome and a novel homozygous variant in the TNXB gene

H. Hakonarson, P. Sleiman, W. Dridi, 2021, American journal of medical genetics. Part A.

Machine Learning for Interpretation of DNA Variants of Maturity-Onset Diabetes of the Young Genes Based on ACMG Criteria

Joseph T. Glessner, H. Hakonarson, H. Qu, 2020, medRxiv.

Erratum to: Copy number variation in CEP57L1 predisposes to congenital absence of bilateral ACL and PCL ligaments

Joseph T. Glessner, H. Hakonarson, Yiran Guo, 2015, Human Genomics.

ParseCNV2: efficient sequencing tool for copy number variation genome-wide association studies

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2022, European Journal of Human Genetics.

Mapping Splicing Quantitative Trait Loci in RNA-Seq

Mingyao Li, Cheng Jia, Yu Hu, 2015, Cancer Informatics.

Serum levels of the IgA isotype switch factor TGF‐β1 are elevated in patients with COVID‐19

H. Hakonarson, H. Qu, Shau-ku Huang, 2021, FEBS letters.

Rare recurrent copy number variations in metabotropic glutamate receptor interacting genes in children with neurodevelopmental disorders

Joseph T. Glessner, J. Glessner, H. Hakonarson, 2023, Journal of Neurodevelopmental Disorders.

Genomic information of children with malignant brain tumors for the prediction of length of hospitalization.

J. Glessner, H. Hakonarson, H. Qu, 2023, Cancer Communications.

High Comorbidity of Pediatric Cancers in Patients with Birth Defects: Insights from Whole Genome Sequencing Analysis of Copy Number Variations.

J. Glessner, H. Hakonarson, H. Qu, 2023, Translational research : the journal of laboratory and clinical medicine.

NASP gene contributes to autism by epigenetic dysregulation of neural and immune pathways

J. Glessner, H. Hakonarson, Yichuan Liu, 2024, Journal of Medical Genetics.