T. Arakawa

发表

Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum.

Shujiro Okuda, Aina Gotoh, M. Kitaoka, 2017, Cell chemical biology.

Structures of the 5-HT2A receptor in complex with the antipsychotics risperidone and zotepine

S. Iwata, K. Hirata, N. Nomura, 2019, Nature Structural & Molecular Biology.

Structures of the 5-HT2A receptor in complex with the antipsychotics risperidone and zotepine

S. Iwata, K. Hirata, N. Nomura, 2019, Nature Structural & Molecular Biology.

Crystal structure of a feruloyl esterase belonging to the tannase family: A disulfide bond near a catalytic triad

Ratna R. Thangudu, Kentaro Suzuki, K. Igarashi, 2014, Proteins.

Crystallographic and cryogenic electron microscopic structures and enzymatic characterization of sulfur oxygenase reductase from Sulfurisphaera tokodaii

M. Kawasaki, S. Fushinobu, T. Wakagi, 2020, bioRxiv.

Molecular analysis of cyclic α-maltosyl-(1→6)-maltose binding protein in the bacterial metabolic pathway

Tetsuya Mori, K. Igarashi, S. Fushinobu, 2020, PloS one.

Structural features of a bacterial cyclic α-maltosyl-(1→6)-maltose (CMM) hydrolase critical for CMM recognition and hydrolysis.

Tetsuya Mori, S. Fushinobu, T. Arakawa, 2018, The Journal of biological chemistry.

Crystal structure of the anion exchanger domain of human erythrocyte band 3

N. Hamasaki, M. Iwata, S. Iwata, 2015, Science.

Dissecting the Stereocontrolled Conversion of Short-Lived Sulfenic Acid by Lachrymatory Factor Synthase

T. Terada, K. Shimizu, Masahiro Kato, 2020 .

Crystal structure of the central and the C-terminal RNase domains of colicin D implicated its translocation pathway through inner membrane of target cell

T. Ogawa, H. Masaki, Jung-Wei Chang, 2018, Journal of biochemistry.

The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors

Siobhán S. Wills, Tasuku Ito, Yusuke Yamada, 2017, The Journal of Biological Chemistry.

Kinetics and Binding Sites for Interaction of the Prefoldin with a Group II Chaperonin

M. Okochi, M. Yohda, M. Leroux, 2004, Journal of Biological Chemistry.

Structural and functional analysis of gum arabic l-rhamnose-α-1,4-d-glucuronate lyase establishes a novel polysaccharide lyase family

S. Fushinobu, T. Arakawa, T. Sakamoto, 2021, The Journal of biological chemistry.

Crystal structure of β-L-arabinobiosidase belonging to glycoside hydrolase family 121

K. Fujita, S. Fushinobu, C. Yamada, 2020, bioRxiv.

Functional expression of thiocyanate hydrolase is promoted by its activator protein, P15K

M. Maeda, M. Yohda, H. Nakayama, 2006, FEBS letters.

Charge neutralization and β-elimination cleavage mechanism of family 42 L-rhamnose-α-1,4-D-glucuronate lyase revealed using neutron crystallography

S. Fushinobu, T. Arakawa, K. Kusaka, 2022, bioRxiv.

Crystal structure of glycoside hydrolase family 127 β-l-arabinofuranosidase from Bifidobacterium longum.

Tasuku Ito, G. Beckham, Seonah Kim, 2014, Biochemical and biophysical research communications.

Structural basis for the 4′-hydroxylation of diclofenac by a microbial cytochrome P450 monooxygenase

H. Ikeda, S. Fushinobu, T. Wakagi, 2015, Applied Microbiology and Biotechnology.

Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity, and transglycosylation activity of metagenomic β‐glucosidase Td2F2

T. Uchiyama, K. Miyazaki, S. Fushinobu, 2016, The FEBS journal.

Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center.

M. Yohda, N. Kamiya, T. Arakawa, 2007, Journal of molecular biology.

Proteoliposome-based selection of a recombinant antibody fragment against the human M2 muscarinic acetylcholine receptor.

S. Iwata, N. Nomura, M. Shiroishi, 2014, Monoclonal antibodies in immunodiagnosis and immunotherapy.

Structural basis for the specific cleavage of core-fucosylated N-glycans by endo-β-N-acetylglucosaminidase from the fungus Cordyceps militaris

K. Takegawa, T. Kinoshita, Yujiro Higuchi, 2019, The Journal of Biological Chemistry.

Structure and mechanism of the mammalian fructose transporter GLUT5

S. Iwata, N. Nomura, Takuya Kobayashi, 2015, Nature.

Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes*

Hiroyuki Nakai, M. Kitaoka, S. Fushinobu, 2015, The Journal of Biological Chemistry.

Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis.

Tasuku Ito, Kenji Yamamoto, S. Fushinobu, 2015, Chemical communications.

Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family

Katsunori Tanaka, T. Terada, K. Shimizu, 2021, The Journal of biological chemistry.

Biochemical and structural characterization of a novel 4‐O‐α‐l‐rhamnosyl‐β‐d‐glucuronidase from Fusarium oxysporum

S. Fushinobu, T. Arakawa, T. Sakamoto, 2021, The FEBS journal.

Discovery of α-l-arabinopyranosidases from human gut microbiome expands the diversity within glycoside hydrolase family 42

B. Svensson, L. Lo Leggio, M. Kitaoka, 2017, The Journal of Biological Chemistry.

Structural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum

M. Nishimoto, M. Kitaoka, S. Fushinobu, 2019, Scientific Reports.

Open-close structural change upon ligand binding and two magnesium ions required for the catalysis of N-acetylhexosamine 1-kinase.

M. Nishimoto, M. Kitaoka, S. Fushinobu, 2015, Biochimica et biophysica acta.

G protein-coupled receptor inactivation by an allosteric inverse-agonist antibody

S. Iwata, N. Nomura, A. Cameron, 2011, Nature.

Liprin-α controls stress fiber formation by binding to mDia and regulating its membrane localization

S. Narumiya, K. Okawa, N. Watanabe, 2012, Journal of Cell Science.

Structural basis for the 4′-hydroxylation of diclofenac by a microbial cytochrome P450 monooxygenase

H. Ikeda, S. Fushinobu, T. Wakagi, 2014, Applied Microbiology and Biotechnology.

Structure and molecular dynamics simulation of archaeal prefoldin: the molecular mechanism for binding and recognition of nonnative substrate proteins.

K. Noguchi, M. Yohda, K. Miki, 2008, Journal of molecular biology.

Biochemical and structural analyses of a bacterial endo-β-1,2-glucanase reveal a new glycoside hydrolase family

Hiroki Matsunaga, Hiroyuki Nakai, M. Nakajima, 2017, The Journal of Biological Chemistry.

Identification and characterization of a novel β-D-galactosidase that releases pyruvylated galactose

K. Takegawa, K. Tashiro, Yujiro Higuchi, 2018, Scientific Reports.

Structure of Allium lachrymatory factor synthase elucidates catalysis on sulfenic acid substrate

Masahiro Kato, S. Fushinobu, T. Arakawa, 2017, bioRxiv.

Rho and Anillin-dependent Control of mDia2 Localization and Function in Cytokinesis

S. Narumiya, T. Miki, K. Okawa, 2010, Molecular biology of the cell.

Structural basis for catalytic activation of thiocyanate hydrolase involving metal-ligated cysteine modification.

M. Yohda, H. Nakayama, N. Dohmae, 2009, Journal of the American Chemical Society.

Crystal structure of a symmetric football-shaped GroEL:GroES2-ATP14 complex determined at 3.8Å reveals rearrangement between two GroEL rings.

H. Taguchi, T. Shimamura, T. Arakawa, 2014, Journal of molecular biology.

Crystal structures of archaeal 2-oxoacid:ferredoxin oxidoreductases from Sulfolobus tokodaii

S. Fushinobu, T. Wakagi, T. Arakawa, 2016, Scientific Reports.

Understanding the molecular mechanism underlying the high catalytic activity of p-hydroxybenzoate hydroxylase mutants for producing gallic acid.

T. Nishi, T. Terada, K. Shimizu, 2019, Biochemistry.

[Review] Enzymes Involved in Levoglucosan Metabolism by Microbes

M. Kitaoka, S. Fushinobu, C. Yamada, 2020 .

Identification, functional characterization, and crystal structure determination of bacterial levoglucosan dehydrogenase

M. Kitaoka, S. Fushinobu, C. Yamada, 2018, The Journal of Biological Chemistry.

Structures of the 5-HT2A receptor in complex with the antipsychotics risperidone and zotepine

S. Iwata, K. Hirata, N. Nomura, 2019, Nature Structural & Molecular Biology.

Structural and thermodynamic insights into β-1,2-glucooligosaccharide capture by a solute-binding protein in Listeria innocua

T. Terada, Hiroyuki Nakai, M. Nakajima, 2018, The Journal of Biological Chemistry.

Structural analysis of β‐L‐arabinobiose‐binding protein in the metabolic pathway of hydroxyproline‐rich glycoproteins in Bifidobacterium longum

T. Terada, K. Shimizu, K. Fujita, 2020, The FEBS journal.

Ligand complex structures of l‐amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 and its conformational change

D. Matsui, Y. Asano, S. Fushinobu, 2018, FEBS open bio.

Isolation and characterization of a thermostable lipase from Bacillus thermoamylovorans NB501.

S. Fushinobu, C. Yamada, T. Arakawa, 2016, The Journal of general and applied microbiology.

Structure of aspartate racemase complexed with a dual substrate analogue, citric acid, and implications for the reaction mechanism

M. Yohda, R. Iizuka, A. Ohtaki, 2008, Proteins.

Two arginine residues in the substrate pocket predominantly control the substrate selectivity of thiocyanate hydrolase.

K. Noguchi, M. Yohda, A. Ohtaki, 2013, Journal of bioscience and bioengineering.

Rho and Anillin-dependent Control of mDia2 Localization and Function in Cytokinesis

S. Narumiya, T. Miki, K. Okawa, 2010, Molecular biology of the cell.

Crystal structure of a feruloyl esterase belonging to the tannase family: A disulfide bond near a catalytic triad

Ratna R. Thangudu, Kentaro Suzuki, K. Igarashi, 2014, Proteins.

Proteoliposome-based selection of a recombinant antibody fragment against the human M2 muscarinic acetylcholine receptor.

S. Iwata, N. Nomura, M. Shiroishi, 2014, Monoclonal antibodies in immunodiagnosis and immunotherapy.

Structural and thermodynamic insights into (cid:2) -1,2-glucooligosaccharide capture by a solute-binding protein in Listeria innocua

K. Igarashi, M. Samejima, S. Fushinobu, 2018 .

Rho and Anillin-dependent Control of mDia2 Localization and Function in Cytokinesis

K. Okawa, T. Ishizaki, T. Arakawa, 2010, Molecular biology of the cell.

Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase , Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes *

M. Kitaoka, T. Nihira, T. Arakawa, 2015 .

Discovery of α-l-arabinopyranosidases from human gut microbiome expands the diversity within glycoside hydrolase family 42

B. Svensson, L. Lo Leggio, M. Kitaoka, 2017, The Journal of Biological Chemistry.

Discovery of -L-arabinopyranosidases from human gut microbiome expands the diversity within glycoside hydrolase family 42

M. Kitaoka, S. Fushinobu, T. Katayama, 2018 .

Discovery of -L-arabinopyranosidases from human gut microbiome expands the diversity within glycoside hydrolase family 42

M. Kitaoka, S. Fushinobu, T. Katayama, 2018 .

May 10, 2020 Discovery of -L-arabinopyranosidases from human gut microbiome expands the diversity within glycoside

M. Kitaoka, S. Fushinobu, T. Katayama, 2017 .