David Penny

发表

TurboTree: a fast algorithm for minimal trees

Michael D. Hendy, David Penny, 1987, Comput. Appl. Biosci..

Analytic solutions for three taxon ML trees with variable rates across sites

Michael D. Hendy, Benny Chor, David Penny, 2007, Discret. Appl. Math..

QUOKKA, the pinhole small-angle neutron scattering instrument at the OPAL Research Reactor, Australia: design, performance, operation and scientific highlights

Martin Jones, Frank Darmann, Warren Brown, 2018 .

Searching for ncRNAs in eukaryotic genomes: Maximizing biological input with RNAmotif

David Penny, Lesley J. Collins, Thomas J. Macke, 2004, J. Integr. Bioinform..

A Search for H/ACA SnoRNAs in Yeast Using MFE Secondary Structure Prediction

Vincent Moulton, Paul P. Gardner, Michael D. Hendy, 2003, Bioinform..

Multiple maxima of likelihood in phylogenetic trees: an analytic approach

Barbara R. Holland, Michael D. Hendy, Benny Chor, 2000, RECOMB '00.

Reconstructing Phylogenies From Nucleotide Pattern Probabilities: A Survey and some New Results

Mike A. Steel, Michael D. Hendy, David Penny, 1998, Discret. Appl. Math..

Complete Families of Linear Invariants for Some Stochastic Models of Sequence Evolution, with and without Molecular Clock Assumption

Michael D. Hendy, David Penny, 1996, J. Comput. Biol..

We Need More Information on Proteins, Regulation and Catalysis

David Penny, D. Penny, 2017 .

Metrics on RNA Secondary Structures

Mike A. Steel, Vincent Moulton, Michael Zuker, 2000, J. Comput. Biol..

What can bioinformatics contribute to explain the origin of life?

David Penny, 1999, German Conference on Bioinformatics.

Analytic Solutions for Three-Taxon MLMC Trees with Variable Rates Across Sites

Michael D. Hendy, Benny Chor, David Penny, 2001, WABI.

On the Distribution of Lengths of Evolutionary Trees

Nicholas C. Wormald, László A. Székely, Michael D. Hendy, 1990, SIAM J. Discret. Math..

Index-Free De Novo Assembly and Deconvolution of Mixed Mitochondrial Genomes

Patrick J. Biggs, David Penny, Bennet J. McComish, 2010, Genome biology and evolution.

Systematic Error in Seed Plant Phylogenomics

Patrick J. Biggs, David Penny, R. A. Atherton, 2011, Genome biology and evolution.

Edge lengths of trees from sequence data

Michael D. Hendy, David Penny, 1987 .

Relics from the RNA World

David Penny, Anthony M. Poole, D. Penny, 1998, Journal of Molecular Evolution.

Gaps: an elusive source of phylogenetic information.

Barbara R. Holland, David Penny, D. Penny, 2012, Systematic biology.

Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling.

David Penny, Matthew J Phillips, D. Penny, 2002, Molecular biology and evolution.

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Reconstructing the origins and dispersal of the Polynesian bottle gourd (Lagenaria siceraria).

David Penny, David L. Erickson, D. Penny, 2006, Molecular biology and evolution.

IsProchlorothrix hollandica the best choice as a prokaryotic model for higher plant Chla/b photosynthesis?

Michael D. Hendy, Peter J. Lockhart, David Penny, 1993, Photosynthesis Research.

Coevolution of genomic intron number and splice sites.

David Penny, Manuel Irimia, Scott W Roy, 2007, Trends in genetics : TIG.

Cladograms Should Be Called Trees

David Penny, M. D. Hendy, D. Penny, 1984 .

A bias in ML estimates of branch lengths in the presence of multiple signals.

David Penny, Matthew J Phillips, D. Penny, 2008, Molecular biology and evolution.

Measuring Fit of Sequence Data to Phylogenetic Model: Gain of Power Using Marginal Tests

David Penny, Peter J. Waddell, D. Penny, 2008, Journal of Molecular Evolution.

Widespread intron loss suggests retrotransposon activity in ancient apicomplexans.

David Penny, D. Penny, S. Roy, 2007, Molecular biology and evolution.

Estimating Changes in Mutational Mechanisms of Evolution

David Penny, D. Penny, R. Ota, 2003, Journal of Molecular Evolution.

The RNA infrastructure: dark matter of the eukaryotic cell?

David Penny, D. Penny, L. Collins, 2009, Trends in genetics : TIG.

Investigating the Intron Recognition Mechanism in Eukaryotes

David Penny, Lesley J. Collins, D. Penny, 2006 .

A graph theoretic approach to the development of minimal phylogenetic trees

L. R. Foulds, David Penny, M. D. Hendy, 1979, Journal of Molecular Evolution.

Origins of life: Common ancestry put to the test

Mike Steel, David Penny, M. Steel, 2010, Nature.

Mathematical Elegance with Biochemical Realism: The Covarion Model of Molecular Evolution

Michael D. Hendy, Michael A. Charleston, David Penny, 2001, Journal of Molecular Evolution.

A Framework for the Quantitative Study of Evolutionary Trees

Michael D. Hendy, David Penny, D. Penny, 1989 .

Parsimony Can Be Consistent

Michael D. Hendy, Mike Steel, David Penny, 1993 .

The Power of Relative Rates Tests Depends on the Data

Michael D. Hendy, David Penny, Andrew Rambaut, 2000, Journal of Molecular Evolution.

Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing

David Penny, Manuel Irimia, Jakob Lewin Rukov, 2007, BMC Evolutionary Biology.

Use of RNA Secondary Structure for Studying the Evolution of RNase P and RNase MRP

Vincent Moulton, David Penny, Lesley J. Collins, 2000, Journal of Molecular Evolution.

Estimating the bias on the logdeterminant transformation for evolutionary trees

David Penny, Avner Bar-Hen, D. Penny, 1996 .

Evolution: A View from the 21st Century

David Penny, D. Penny, 2012 .

Phylogenetics: Parsimony and Distance Methods

Michael D. Hendy, David Penny, 2004 .

The sampling distributions and covariance matrix of phylogenetic spectra

Michael D. Hendy, David Penny, Peter J. Waddell, 1994 .

The Origin of Land Plants: A Phylogenomic Perspective

David Penny, D. Penny, Linhua Sun, 2015, Evolutionary bioinformatics online.

RNA Folding Argues Against a Hot-Start Origin of Life

Vincent Moulton, Paul P. Gardner, David Penny, 2000, Journal of Molecular Evolution.

Comparing Trees with Pendant Vertices Labelled

David Penny, M. D. Hendy, D. Penny, 1984 .

Charles Darwin, Gradualism and Punctuated Equilibria

David Penny, D. Penny, 1983 .

Significance of the length of the shortest tree

Michael D. Hendy, Mike Steel, David Penny, 1992 .

Complex spliceosomal organization ancestral to extant eukaryotes.

Lesley Collins, David Penny, D. Penny, 2005, Molecular biology and evolution.

Biology and 'physics envy'

David Penny, 2005 .

High resolution measurement of plant growth

David Penny, D. Penny, P. Penny, 1974 .

Origin of land plants using the multispecies coalescent model.

Zhen Yan, David Penny, Liang Liu, 2013, Trends in plant science.

Root strength in some Populus and Salix clones

David Penny, D. Penny, R. L. Hathaway, 1975 .

An Interpretive Review of the Origin of Life Research

David Penny, D. Penny, 2005 .

Evolutionary biology: Relativity for molecular clocks

David Penny, D. Penny, 2005, Nature.