H. Wood

发表

Copy Number Changes in Carcinomas: Applications

H. Wood, P. Rabbitts, 2015 .

Using next-generation sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fixed paraffin-embedded specimens

K. Maclennan, D. Adams, G. Taylor, 2010, Nucleic acids research.

An Integrated Inspection of the Somatic Mutations in a Lung Squamous Cell Carcinoma Using Next-Generation Sequencing

Lucy F. Stead, A. Ryan, S. Berri, 2013, PloS one.

The transcriptional consequences of somatic amplifications, deletions, and rearrangements in a human lung squamous cell carcinoma.

Lucy F. Stead, S. Berri, L. Stead, 2012, Neoplasia.

The clonal relationships between pre‐cancer and cancer revealed by ultra‐deep sequencing

Lucy F. Stead, K. Maclennan, S. Berri, 2015, The Journal of pathology.

Properties and approximate p-value calculation of the Cramer test

C. Taylor, A. Gusnanto, H. Wood, 2020 .

Developing a Raman spectroscopy-based tool to stratify patient response to pre-operative radiotherapy in rectal cancer.

Julia Gala de Pablo, S. Evans, H. Wood, 2020, The Analyst.

Genomic analysis to assess disease progression and recurrence in patients with oral squamous cell carcinoma: - a preliminary study.

A. Kanatas, A. Glover, H. Wood, 2017, The British journal of oral & maxillofacial surgery.

Comparing mutation calls in fixed tumour samples between the affymetrix OncoScan® array and PCR based next-generation sequencing

P. Quirke, F. Brew, H. Wood, 2017, BMC Medical Genomics.

Past and future impact of next‐generation sequencing in head and neck cancer

K. Maclennan, H. Wood, P. Rabbitts, 2016, Head & neck.

Prediction of tumour pathological subtype from genomic profile using sparse logistic regression with random effects

A. Gusnanto, H. Wood, Khaled M. Alqahtani, 2020, Journal of applied statistics.

No evidence for integrated viral DNA in the genome sequence of cutaneous squamous cell carcinoma

S. Arron, R. Cho, M. Dimon, 2014, The Journal of investigative dermatology.

A computational index derived from whole-genome copy number analysis is a novel tool for prognosis in early stage lung squamous cell carcinoma.

K. Maclennan, S. Berri, O. Belvedere, 2012, Genomics.

Luminal Bioavailability of Orally Administered ω-3 PUFAs in the Distal Small Intestine, and Associated Changes to the Ileal Microbiome, in Humans with a Temporary Ileostomy

P. Quirke, P. Loadman, S. Mitra, 2021, The Journal of nutrition.

Is next-generation sequencing an important tool in HPV subtype diagnosis?

H. Wood, K. Hunter, R. Bolt, 2012, Expert review of molecular diagnostics.

Applications of Very Low-Coverage Sequencing in Cancer Genomics: Copy Number, Virus Detection and Survival

H. Wood, 2013 .

Mutational signature in colorectal cancer caused by genotoxic pks+E. coli

A. Need, M. Meyerson, M. Kayikci, 2020, Nature.

Analysis of an Indian colorectal cancer faecal microbiome collection demonstrates universal colorectal cancer-associated patterns, but closest correlation with other Indian cohorts

P. Quirke, H. Wood, C. Young, 2022, bioRxiv.

The risk of colorectal cancer in individuals with mutations of the cystic fibrosis transmembrane conductance regulator (CFTR) gene: An English population-based study.

P. Quirke, H. Wood, D. Peckham, 2022, Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society.

Whole genome sequencing of 2,023 colorectal cancers reveals mutational landscapes, new driver genes and immune interactions

D. Wedge, N. López-Bigas, L. Alexandrov, 2022, bioRxiv.

A randomised trial of the effect of omega-3 polyunsaturated fatty acid supplements on the human intestinal microbiota

P. Quirke, P. Loadman, S. Mitra, 2017, Gut.

Estimating optimal window size for analysis of low-coverage next-generation sequence data

Henry M. Wood, Charles C. Taylor, Pamela Rabbitts, 2014, Bioinform..

Nonreciprocal chromosomal translocations in renal cancer involve multiple DSBs and NHEJ associated with breakpoint inversion but not necessarily with transcription

T. Rabbitts, P. Dear, Hanif Ali, 2013, Genes, chromosomes & cancer.

Sparse modelling of cancer patients' survival based on genomic copy number alterations

Khaled S. Alqahtani, A. Gusnanto, H. Wood, 2022, J. Biomed. Informatics.

Sequence differentiation in regions identified by a genome scan for local adaptation

Jane Rogers, Sean Humphray, J. Rogers, 2008, Molecular ecology.

The genomic road to invasion—examining the similarities and differences in the genomes of associated oral pre-cancer and cancer samples

K. Maclennan, H. Wood, P. Rabbitts, 2017, Genome Medicine.

Diagnosis of copy number variation by Illumina next generation sequencing is comparable in performance to oligonucleotide array comparative genomic hybridisation.

G R Taylor, G. Taylor, S. Berri, 2013, Genomics.

Next-generation sequencing for simultaneous determination of human papillomavirus load, subtype, and associated genomic copy number changes in tumors.

K. Maclennan, G. Taylor, S. Berri, 2012, The Journal of molecular diagnostics : JMD.

Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data

Henry M. Wood, Yudi Pawitan, Pamela Rabbitts, 2012, Bioinform..

HER2 overexpression and amplification as a potential therapeutic target in colorectal cancer: analysis of 3256 patients enrolled in the QUASAR, FOCUS and PICCOLO colorectal cancer trials

J. Barrett, D. Kerr, R. Gray, 2016, The Journal of pathology.

Microbiome Analysis of More Than 2,000 NHS Bowel Cancer Screening Programme Samples Shows the Potential to Improve Screening Accuracy

C. Huttenhower, J. Barrett, P. Quirke, 2021, Clinical Cancer Research.

The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries

C. Huttenhower, R. Seshadri, P. Quirke, 2021, Genome medicine.

IMSA: Integrated Metagenomic Sequence Analysis for Identification of Exogenous Reads in a Host Genomic Background

Henry M. Wood, S. Arron, M. Dimon, 2013, PloS one.

MicroRNAs and head and neck cancer: reviewing the first decade of research.

H. Wood, P. Rabbitts, N. Sethi, 2014, European Journal of Cancer.

Clinical and genomic analysis of a randomised phase II study evaluating anastrozole and fulvestrant in postmenopausal patients treated for large operable or locally advanced hormone-receptor-positive breast cancer

M. Nikolski, G. MacGrogan, H. Bonnefoi, 2015, British Journal of Cancer.

EGFR Amplification in Metastatic Colorectal Cancer.

A. Bardelli, R. Yaeger, J. Hechtman, 2021, Journal of the National Cancer Institute.

Next-generation sequencing analysis for detecting human papillomavirus in oral verrucous carcinoma.

K. Maclennan, S. Berri, A. Cassenti, 2014, Oral surgery, oral medicine, oral pathology and oral radiology.

No Significant Association Between the Fecal Microbiome and the Presence of Irritable Bowel Syndrome-type Symptoms in Patients with Quiescent Inflammatory Bowel Disease.

A. Ford, P. Quirke, D. Gracie, 2018, Inflammatory bowel diseases.

Diagnosis of fetal submicroscopic chromosomal abnormalities in failed array CGH samples: copy number by sequencing as an alternative to microarrays for invasive fetal testing

S. Berri, P. Roberts, H. Wood, 2015, Ultrasound in obstetrics & gynecology : the official journal of the International Society of Ultrasound in Obstetrics and Gynecology.

Polycomb Repressor Complex 1 Member, BMI1 Contributes to Urothelial Tumorigenesis through p16-Independent Mechanisms

M. Knowles, C. Hurst, J. Roulson, 2015, Translational oncology.

Characterisation of dysplastic liver nodules using low‐pass DNA sequencing and detection of chromosome arm‐level abnormalities in blood‐derived cell‐free DNA

P. Quirke, P. Johnson, W. Fateen, 2021, The Journal of pathology.

A novel genomic signature reclassifies an oral cancer subtype

Lucy F. Stead, K. Maclennan, S. Berri, 2015, International journal of cancer.

Examining the potential use and long-term stability of guaiac faecal occult blood test cards for microbial DNA 16S rRNA sequencing

P. Quirke, H. Wood, S. Halloran, 2016, Journal of Clinical Pathology.

Adaptor Template Oligo-Mediated Sequencing (ATOM-Seq) is a new ultra-sensitive UMI-based NGS library preparation technology for use with cfDNA and cfRNA

Thomas L. Dunwell, Simon C. Dailey, S. Scaife, 2021, Scientific Reports.

Adaptor Template Oligo-Mediated Sequencing (ATOM-Seq): A versatile and ultra-sensitive UMI-based NGS library preparation technology, for use with cfDNA and cfRNA

Xiangsheng Yang, Hui Xiao, Thomas L. Dunwell, 2020, bioRxiv.

Comparing mutation calls in fixed tumour samples between the affymetrix OncoScan® array and PCR based next-generation sequencing

P. Quirke, F. Brew, H. Wood, 2017, BMC Medical Genomics.

Survival of Head and Neck Cancer Cells Relies upon LZK Kinase-Mediated Stabilization of Mutant p53.

J. Brognard, P. Torres-Ayuso, H. Wood, 2017, Cancer research.

Preservation of gut microbiome following ridinilazole versus fidaxomicin treatment of Clostridium difficile infection

P. Quirke, M. Wilcox, S. Mitra, 2017 .

545P Epidermal growth factor receptor (EGFR) copy number (CN) as a biomarker of prognosis and panitumumab (Pan) benefit in RAS-wt advanced colorectal cancer (aCRC)

J. Barrett, P. Quirke, F. Elliott, 2017 .

MicroRNAs and head and neck cancer: reviewing the first decade of research.

H. Wood, P. Rabbitts, N. Sethi, 2014, European journal of cancer.

Investigating the Faecal Microbiome in Formalin Fixed Paraffin Embedded (FFPE) Material

P. Quirke, H. Wood, M. Taylor, 2015 .