C. Sonthirod

发表

De novo hybrid assembly of the rubber tree genome reveals evidence of paleotetraploidy in Hevea species

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2017, Scientific Reports.

De novo assemblies of Luffa acutangula and Luffa cylindrica genomes reveal an expansion associated with substantial accumulation of transposable elements

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2020, Molecular ecology resources.

A chromosome‐scale assembly of the black gram (Vigna mungo) genome

S. Tangphatsornruang, W. Pootakham, P. Somta, 2020, Molecular ecology resources.

Targeted disruption of the polyketide synthase gene pks15 affects virulence against insects and phagocytic survival in the fungus Beauveria bassiana.

S. Tangphatsornruang, A. Amnuaykanjanasin, Cheerapha Panyasiri, 2017, Fungal biology.

SNP Identification from RNA Sequencing and Linkage Map Construction of Rubber Tree for Anchoring the Draft Genome

S. Tangphatsornruang, S. Tragoonrung, C. Sonthirod, 2015, PloS one.

A Novel Full-Length Transcriptome Resource for Black Tiger Shrimp (Penaeus monodon) Developed Using Isoform Sequencing (Iso-Seq)

Tanaporn Uengwetwanit, W. Pootakham, N. Karoonuthaisiri, 2020, Frontiers in Marine Science.

Chromosome‐level genome assembly of Indian mangrove (Ceriops tagal) revealed a genome‐wide duplication event predating the divergence of Rhizophoraceae mangrove species

S. Tangphatsornruang, W. Pootakham, Chatree Maknual, 2022, The plant genome.

A chromosome‐scale reference genome assembly of yellow mangrove (Bruguiera parviflora) reveals a whole genome duplication event associated with the Rhizophoraceae lineage

S. Tangphatsornruang, W. Pootakham, Chatree Maknual, 2022, Molecular ecology resources.

Differential expression between drought-tolerant and drought-sensitive sugarcane under mild and moderate water stress as revealed by a comparative analysis of leaf transcriptome

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2020, PeerJ.

Development of a Novel Reference Transcriptome for Scleractinian Coral Porites lutea Using Single-Molecule Long-Read Isoform Sequencing (Iso-Seq)

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2018, Front. Mar. Sci..

Genome assembly of the Pendlebury’s roundleaf bat, Hipposideros pendleburyi, revealed the expansion of Tc1/Mariner DNA transposons in Rhinolophoidea

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2022, DNA research : an international journal for rapid publication of reports on genes and genomes.

A Chromosome-Scale Genome Assembly of Mitragyna speciosa (Kratom) and the Assessment of Its Genetic Diversity in Thailand

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2022, Biology.

The AKR gene family and modifying sex ratios in palms through abiotic stress responsiveness

S. Tangphatsornruang, P. Uthaipaisanwong, S. Tragoonrung, 2015, Functional & Integrative Genomics.

A draft chromosome-scale genome assembly of a commercial sugarcane

Xingtan Zhang, S. Tangphatsornruang, J. Piriyapongsa, 2022, Scientific Reports.

Taxonomic profiling of Symbiodiniaceae and bacterial communities associated with indo-Pacific corals in the Gulf of Thailand using PacBio sequencing of full-length ITS and 16S rRNA genes.

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2021, Genomics.

Heat‐induced shift in coral microbiome reveals several members of the Rhodobacteraceae family as indicator species for thermal stress in Porites lutea

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2019, MicrobiologyOpen.

Dynamics of coral‐associated microbiomes during a thermal bleaching event

S. Tangphatsornruang, W. Pootakham, N. Thongtham, 2018, MicrobiologyOpen.

High resolution profiling of coral-associated bacterial communities using full-length 16S rRNA sequence data from PacBio SMRT sequencing system

Wirulda Pootakham, Wuttichai Mhuantong, S. Tangphatsornruang, 2017, Scientific Reports.

A chromosome‐level assembly of the black tiger shrimp (Penaeus monodon) genome facilitates the identification of growth‐associated genes

I. Nookaew, F. Tangy, V. M. dos Santos, 2020, bioRxiv.

Transcriptome analyses reveal the synergistic effects of feeding and eyestalk ablation on ovarian maturation in black tiger shrimp

I. Nookaew, W. Rungrassamee, W. Pootakham, 2020, Scientific Reports.

The Fungus Metarhizium sp. BCC 4849 Is an Effective and Safe Mycoinsecticide for the Management of Spider Mites and Other Insect Pests

S. Tangphatsornruang, S. Ingsriswang, A. Amnuaykanjanasin, 2021, Insects.

Large-Scale SNP Discovery through RNA Sequencing and SNP Genotyping by Targeted Enrichment Sequencing in Cassava (Manihot esculenta Crantz)

S. Tangphatsornruang, W. Pootakham, K. Triwitayakorn, 2014, PloS one.

Genome-wide SNP discovery and identification of QTL associated with agronomic traits in oil palm using genotyping-by-sequencing (GBS).

S. Tangphatsornruang, W. Pootakham, S. Tragoonrung, 2015, Genomics.

Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon

I. Nookaew, Tanaporn Uengwetwanit, W. Pootakham, 2021, Life.

Optimization of high molecular weight DNA extraction methods in shrimp for a long-read sequencing platform

I. Nookaew, Tanaporn Uengwetwanit, W. Rungrassamee, 2020, PeerJ.

Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling

S. Tangphatsornruang, Piyada Juntawong, C. Sonthirod, 2014, Front. Plant Sci..

De novo Transcriptome Analysis of Apical Meristem of Jatropha spp. Using 454 Pyrosequencing Platform, and Identification of SNP and EST-SSR Markers

S. Tangphatsornruang, P. Somta, Piyada Juntawong, 2016, Plant Molecular Biology Reporter.

A SNP variation in an expansin (EgExp4) gene affects height in oil palm

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2022, PeerJ.

De Novo Reference Assembly of the Upriver Orange Mangrove (Bruguiera sexangula) Genome

S. Tangphatsornruang, W. Pootakham, Chatree Maknual, 2022, Genome biology and evolution.

De novo Assembly of the Brain Coral Platygyra sinensis Genome

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2021, Frontiers in Marine Science.

De novo chromosome-level assembly of Centella asiatica genome.

S. Tangphatsornruang, W. Pootakham, T. Toojinda, 2021, Genomics.

The complete mitogenome of the Thai soldier crab Mictyris thailandensis Davie, Wisespongpand & Shih, 2013 (Crustacea: Decapoda: Mictyridae)

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2022, Mitochondrial DNA. Part B, Resources.

The complete mitochondrial genome sequence of the mountain crab Indochinamon bhumibol

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2021, Mitochondrial DNA. Part B, Resources.

The two chromosomes of the mitochondrial genome of a sugarcane cultivar: assembly and recombination analysis using long PacBio reads

S. Tangphatsornruang, W. Pootakham, S. Tragoonrung, 2016, Scientific Reports.

Assembly and analysis of a male sterile rubber tree mitochondrial genome reveals DNA rearrangement events and a novel transcript

Somvong Tragoonrung, S. Tangphatsornruang, P. Uthaipaisanwong, 2014, BMC Plant Biology.

Construction of a high-density integrated genetic linkage map of rubber tree (Hevea brasiliensis) using genotyping-by-sequencing (GBS)

S. Tangphatsornruang, W. Pootakham, S. Tragoonrung, 2015, Front. Plant Sci..

The First Genetic Linkage Map of Winged Bean [Psophocarpus tetragonolobus (L.) DC.] and QTL Mapping for Flower-, Pod-, and Seed-Related Traits

S. Tangphatsornruang, W. Pootakham, P. Somta, 2022, Plants.

The Genome and Transcriptome Analysis of the Vigna mungo Chloroplast

S. Tangphatsornruang, W. Pootakham, P. Somta, 2020, Plants.

Complete chloroplast genome sequences of five Bruguiera species (Rhizophoraceae): comparative analysis and phylogenetic relationships

S. Tangphatsornruang, W. Pootakham, Chatree Maknual, 2021, PeerJ.

Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2020, Data in brief.

Transcriptome analyses reveal the synergistic effects of feeding and eyestalk ablation on ovarian maturation in black tiger shrimp

I. Nookaew, W. Rungrassamee, W. Pootakham, 2020, Scientific Reports.

Elucidating SNP-Based Population Structure and Genetic Diversity of Bruguiera gymnorhiza (L.) Savigny in Thailand

S. Tangphatsornruang, W. Pootakham, Chatree Maknual, 2023, Forests.

Assembly of the durian chloroplast genome using long PacBio reads

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2020, Scientific Reports.

High resolution profiling of coral-associated bacterial communities using full-length 16S rRNA sequence data from PacBio SMRT sequencing system

S. Tangphatsornruang, W. Pootakham, N. Thongtham, 2017, Scientific Reports.

1 A chromosome-level assembly of the black tiger shrimp ( Penaeus monodon ) genome facilitates 1 the identification of novel growth-associated genes 2 3

I. Nookaew, F. Tangy, P. Schaap, 2020 .

Assembly and analysis of a male sterile rubber tree mitochondrial genome reveals DNA rearrangement events and a novel transcript

S. Tangphatsornruang, P. Uthaipaisanwong, S. Tragoonrung, 2014, BMC Plant Biology.

A de novo reference assembly of the yellow mangrove Ceriops zippeliana genome

S. Tangphatsornruang, W. Pootakham, Chatree Maknual, 2022, G3.

Effects of methylation-sensitive enzymes on the enrichment of genic SNPs and the degree of genome complexity reduction in a two-enzyme genotyping-by-sequencing (GBS) approach: a case study in oil palm (Elaeis guineensis)

S. Tangphatsornruang, W. Pootakham, C. Sonthirod, 2016, Molecular Breeding.

Genome assemblies of Vigna reflexo-pilosa (créole bean) and its progenitors, Vigna hirtella and Vigna trinervia, revealed homoeolog expression bias and expression-level dominance in the allotetraploid

S. Tangphatsornruang, W. Pootakham, P. Somta, 2022, GigaScience.

The integrative taxonomy of Beauveria asiatica and B. bassiana species complexes with whole-genome sequencing, morphometric and chemical analyses

T. Giraud, W. Pootakham, C. Sonthirod, 2021, Persoonia.

Genes controlling hydrolysate toxin tolerance identified by QTL analysis of the natural Saccharomyces cerevisiae BCC39850

V. M. D. Martins dos Santos, S. Tangphatsornruang, S. Ingsriswang, 2023, Applied microbiology and biotechnology.

Comprehensive genome assembly reveals genetic diversity and carcass consumption insights in critically endangered Asian king vultures

S. Tangphatsornruang, S. Tongsima, B. Pukazhenthi, 2024, Scientific reports.

A de novo chromosome-scale assembly of the Lablab purpureus genome

S. Tangphatsornruang, W. Pootakham, P. Somta, 2024, Frontiers in plant science.

The AKR gene family and modifying sex ratios in palms through abiotic stress responsiveness

S. Tangphatsornruang, S. Tragoonrung, C. Sonthirod, 2014, Functional & Integrative Genomics.

Four New Sequence Types and Molecular Characteristics of Multidrug-Resistant Escherichia coli Strains from Foods in Thailand

C. Sonthirod, R. Aunpad, Natharin Ngamwongsatit, 2024, Antibiotics.