Yang Chen

发表

GTSE1, CDC20, PCNA, and MCM6 Synergistically Affect Regulations in Cell Cycle and Indicate Poor Prognosis in Liver Cancer

Yongchang Zheng, Haifeng Xu, X. Sang, 2019, Analytical cellular pathology.

Proteome-scale analysis of phase-separated proteins in immunofluorescence images.

Chaolin Zhang, Tingting Li, Chunyu Yu, 2021, Briefings in bioinformatics.

Network embedding-based representation learning for single cell RNA-seq data

Michael Q. Zhang, Jin Gu, Weizheng Chen, 2017, Nucleic acids research.

HiCDB: a sensitive and robust method for detecting contact domain boundaries

Michael Q. Zhang, Yang Chen, Fengling Chen, 2018, Nucleic acids research.

Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiation

Michael Q. Zhang, Y. Chen, Juntao Gao, 2018, Cell Death & Disease.

BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions

Michael Q. Zhang, Mohamed Nadhir Djekidel, Guipeng Li, 2017, Nature Communications.

3D Genome Analysis Identifies Enhancer Hijacking Mechanism for High-Risk Factors in Human T-Lineage Acute Lymphoblastic Leukemia

Michael Q. Zhang, Q. Jiang, Yang Chen, 2020, bioRxiv.

Single-cell RNA sequencing of t(8;21) acute myeloid leukemia for risk prediction

Michael Q. Zhang, Yi Zhao, B. Zhu, 2020, Oncology reports.

Characterization of tree shrew (Tupaia belangeri) interleukin-6 and its expression pattern in response to exogenous challenge

Yuanyuan Han, Yang Chen, Xiaomei Sun, 2017, International journal of molecular medicine.

DAZL regulates proliferation of human primordial germ cells by direct binding to precursor miRNAs and enhances DICER processing activity

Hongwei Wang, Xin Ke, Kehkooi Kee, 2022, Nucleic acids research.

Profiling and characterization of constitutive chromatin-enriched RNAs

Z. Zhang, Yang Chen, Zhihu Zhao, 2022, iScience.

Integration of single cell data by disentangled representation learning

Michael Q. Zhang, Yang Chen, Minglei Shi, 2021, Nucleic acids research.

MCMs in Cancer: Prognostic Potential and Mechanisms

Yongchang Zheng, Haifeng Xu, Yue Shi, 2020, Analytical cellular pathology.

Multiomics metabolic and epigenetics regulatory network in cancer: A systems biology perspective.

Yongchang Zheng, Yang Chen, Xuezhu Wang, 2021, Journal of genetics and genomics = Yi chuan xue bao.

MarkovHC: Markov hierarchical clustering for the topological structure of high-dimensional single-cell omics data

Michael Q. Zhang, Yang Chen, Zhenyi Wang, 2020, bioRxiv.

Gene module based regulator inference identifying miR-139 as a tumor suppressor in colorectal cancer.

Michael Q. Zhang, Jin Gu, Zhen Xie, 2014, Molecular bioSystems.

Sox2 and Klf4 as the Functional Core in Pluripotency Induction without Exogenous Oct4.

Michael Q. Zhang, Qi Zhou, Jiashun Zheng, 2019, Cell reports.

A novel epigenetic AML1‐ETO/THAP10/miR‐383 mini‐circuitry contributes to t(8;21) leukaemogenesis

Michael Q. Zhang, Yun Dai, C. Nervi, 2017, EMBO molecular medicine.

Quantifying phase separation property of chromatin associated proteins under physiological conditions using anti-1,6-hexanediol index

Michael Q. Zhang, Tingting Li, J. Qin, 2020, bioRxiv.

3D genome alterations associated with dysregulated HOXA13 expression in high-risk T-lineage acute lymphoblastic leukemia

Q. Jiang, Yang Chen, Minglei Shi, 2021, Nature Communications.

3D genome alterations associated with dysregulated HOXA13 expression in high-risk T-lineage acute lymphoblastic leukemia

Michael Q. Zhang, Q. Jiang, Yang Chen, 2021, Nature communications.

Enhanced expressions of FHL2 and iASPP predict poor prognosis in acute myeloid leukemia

Depei Wu, X. Ke, Yang Chen, 2018, Cancer Gene Therapy.

Enhanced expression of FCER1G predicts positive prognosis in multiple myeloma

Tiansheng Zeng, Yang Chen, Ying Pang, 2020, Journal of Cancer.

MyoD is a 3D genome structure organizer for muscle cell identity

Michael Q. Zhang, Antony K. Chen, Jinbiao Ma, 2022, Nature communications.

Quantifying the phase separation property of chromatin-associated proteins under physiological conditions using an anti-1,6-hexanediol index

Michael Q. Zhang, Tingting Li, J. Qin, 2021, Genome Biology.

Quantifying liquid-liquid phase separation property of chromatin under physiological conditions using Hi-MS and Hi-C

Tingting Li, J. Qin, T. Wei, 2020 .

MyoD is a structure organizer of 3D genome architecture in muscle cells

Michael Q. Zhang, Antony K. Chen, Hu Li, 2020, bioRxiv.

ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis

Michael P Snyder, Michael Q. Zhang, Guipeng Li, 2016, Nucleic acids research.

3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process

Michael Q. Zhang, Mohamed Nadhir Djekidel, Guipeng Li, 2015, Genome Biology.

FIND: difFerential chromatin INteractions Detection using a spatial Poisson process

Michael Q. Zhang, Mohamed Nadhir Djekidel, Michael Q Zhang, 2018, Genome research.

BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions

Michael Q. Zhang, Yanjian Li, M. N. Djekidel, 2017, Nature Communications.

Special Topic: Potential Remedies against Ebola Virus Diseases Hsa-mir-1246, Hsa-mir-320a and Hsa-mir-196b-5p Inhibitors Can Reduce the Cytotoxicity of Ebola Virus Glycoprotein in Vitro

Michael Q. Zhang, Chengyu Jiang, Peng Xie, 2022 .

Co‐inhibitory Molecule B7 Superfamily Member 1 Expressed by Tumor‐Infiltrating Myeloid Cells Induces Dysfunction of Anti‐tumor CD8+ T Cells

Michael Q. Zhang, T. Mak, Younghee Lee, 2018, Immunity.

Engineering EMT using 3D micro-scaffold to promote hepatic functions for drug hepatotoxicity evaluation.

Michael Q. Zhang, Chenyu Huang, Michael Q Zhang, 2016, Biomaterials.

Characteristics of the tree shrew gut virome

Yuanyuan Han, Yang Chen, Xiaomei Sun, 2019, PloS one.

Co-inhibitory Molecule B 7 Superfamily Member 1 Expressed by Tumor-Infiltrating Myeloid Cells Induces Dysfunction of Anti-tumor CD 8 + T Cells Graphical

Michael Q. Zhang, T. Mak, Younghee Lee, 2018 .

PhaSepDB: a database of liquid–liquid phase separation related proteins

H. Hermjakob, Tingting Li, Cristoffer Sevilla, 2019, Nucleic Acids Res..

Proteome-scale analysis of phase-separated proteins in immunofluorescence images

Tingting Li, Minglei Shi, Chaolin Zhang, 2020, Briefings Bioinform..

Different obesity phenotypes correlated with the PI3K-AKT signaling pathway in tree shrews

Yuanyuan Han, Yang Chen, Jiejie Dai, 2018, bioRxiv.

Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiation

Michael Q. Zhang, Juntao Gao, Yanjian Li, 2018, Cell Death & Disease.

Deep-learning enables proteome-scale identification of phase-separated protein candidates from immunofluorescence images

Yang Chen, Minglei Shi, Chunyu Yu, 2019, bioRxiv.

Enhanced expressions of FHL2 and iASPP predict poor prognosis in acute myeloid leukemia

Depei Wu, X. Ke, Yang Chen, 2018, Cancer Gene Therapy.

MarkovHC: Markov hierarchical clustering for the topological structure of high-dimensional single-cell omics data with transition pathway and critical point detection

Michael Q. Zhang, M. Qian, Yang Chen, 2021, Nucleic acids research.