Jianye Ge

发表

Effects of Inclusion of Relatives in DNA Databases: Empirical Observations from 13K SNPs in Hap-Map Population Data

R. Chakraborty, S. Guha, Jianye Ge, 2012 .

Developmental validation of VeriFiler™ Plus PCR Amplification Kit: A 6-dye multiplex assay designed for casework samples.

Jianye Ge, R. Green, Jennifer L Elliott, 2021, Forensic science international. Genetics.

Population data on 25 autosomal STRs for 500 unrelated Kuwaitis.

B. Budowle, Jianye Ge, Mohammad Al-enizi, 2014, Forensic science international. Genetics.

Population Genetic Analyses of GlobalfilerTM Loci for Indian Population

Dennis Y. Wang, Jianye Ge, Ro, 2014 .

Response to: Use of prior odds for missing persons identifications - authors' reply

R. Chakraborty, B. Budowle, Jianye Ge, 2012, Investigative Genetics.

USAT: a bioinformatic toolkit to facilitate interpretation and comparative visualization of tandem repeat sequences

B. Budowle, Jianye Ge, Xuewen Wang, 2022, bioRxiv.

Priniciples for Estimating the Rarity of Y-STR Haplotypes Derived from Forensic Evidence

R. Chakraborty, B. Budowle, Jianye Ge, 2007 .

Response to: DNA identification by pedigree likelihood ratio accommodating population substructure and mutations- authors' reply

R. Chakraborty, B. Budowle, Jianye Ge, 2011, Investigative Genetics.

DNA identification by pedigree likelihood ratio accommodating population substructure and mutations

R. Chakraborty, B. Budowle, Jianye Ge, 2010, Investigative Genetics.

Improvement of short tandem repeat analysis of samples highly contaminated by humic acid.

J. King, D. Shin, Jianye Ge, 2013, Journal of forensic and legal medicine.

Population genetics analysis of 38 STR loci in the She population from Fujian Province of China.

Jianye Ge, X. Bai, Jian Ye, 2014, Legal medicine.

Maternity exclusion with a very high autosomal STRs kinship index

B. Budowle, Yiping Hou, Jianye Ge, 2012, International Journal of Legal Medicine.

Population data of 21 non-CODIS STR loci in Han population of northern China

Jianye Ge, Li Yuan, Di Lu, 2012, International Journal of Legal Medicine.

vcferr: Development, validation, and application of a single nucleotide polymorphism genotyping error simulation framework

August E. Woerner, B. Budowle, Stephen D. Turner, 2022, F1000Research.

vcferr: Development, Validation, and Application of a SNP Genotyping Error Simulation Framework

August E. Woerner, B. Budowle, Stephen D. Turner, 2022, bioRxiv.

Age estimation via quantification of signal-joint T cell receptor excision circles in Koreans.

Sohee Cho, Jianye Ge, Soong-Deok Lee, 2014, Legal medicine.

Evaluating the Impact of Dropout and Genotyping Error on SNP-Based Kinship Analysis With Forensic Samples

August E. Woerner, B. Budowle, Stephen D. Turner, 2022, Frontiers in Genetics.

Interpreting Y chromosome STR haplotype mixture.

R. Chakraborty, B. Budowle, Jianye Ge, 2010, Legal medicine.

A validation study of the Qiagen Investigator DIPplex® kit; an INDEL-based assay for human identification

B. Budowle, J. King, Jianye Ge, 2012, International Journal of Legal Medicine.

Relationship Inference with Low-Coverage Whole Genome Sequencing on Forensic Samples

August E. Woerner, B. Budowle, M. Coble, 2022, Forensic Genomics.

Optimized variant calling for estimating kinship.

August E. Woerner, Sammed N. Mandape, B. Budowle, 2022, Forensic science international. Genetics.

Ancestry inference and admixture component estimations of Chinese Kazak group based on 165 AIM-SNPs via NGS platform

Q. Yang, Jianye Ge, Yating Fang, 2020, Journal of Human Genetics.

A machine learning approach for missing persons cases with high genotyping errors

B. Budowle, J. King, Jianye Ge, 2022, Frontiers in Genetics.

Assessing Sequence Variation and Genetic Diversity of Currently Untapped Y-STR Loci

August E. Woerner, B. Budowle, J. King, 2022, Forensic Science International: Reports.

Evaluating probabilistic genotyping for low-pass DNA sequencing

August E. Woerner, Sammed N. Mandape, B. Budowle, 2022, Forensic Science International: Genetics Supplement Series.

Developmental validation of the EX20+4 system.

B. Budowle, Jianye Ge, Hong Liu, 2014, Forensic science international. Genetics.

A prospective cost–benefit analysis for nylon 4N6FLOQSwabs®: example of the process and potential benefits

A. Sajantila, B. Budowle, Jianye Ge, 2022, International Journal of Legal Medicine.

A convenient guideline to determine if two Y‐STR profiles are from the same lineage

Jianye Ge, M. Short, J. Mulero, 2016, Electrophoresis.

Y-STR loci diversity in native Alaskan populations

Meredith A. Turnbough, R. Chakraborty, B. Budowle, 2011, International Journal of Legal Medicine.

The effects of Asian population substructure on Y STR forensic analyses.

R. Chakraborty, B. Budowle, Jianye Ge, 2009, Legal medicine.

Differences of PCR efficiency between two-step PCR and standard three-step PCR protocols in short tandem repeat amplification

B. Budowle, J. King, Sohee Cho, 2014 .

Forensic investigation approaches of searching relatives in DNA databases

Bruce Budowle, Jianye Ge, B. Budowle, 2020, Journal of forensic sciences.

Developing criteria and data to determine best options for expanding the core CODIS loci

Bruce Budowle, Jianye Ge, B. Budowle, 2012, Investigative Genetics.

Reduction of stutter ratios in short tandem repeat loci typing of low copy number DNA samples.

Bruce Budowle, Jianye Ge, Jonathan L. King, 2014, Forensic science international. Genetics.

Precision DNA Mixture Interpretation with Single-Cell Profiling

Bruce Budowle, Jianye Ge, Jonathan L King, 2021, Genes.

Reconstructing the population history of Nicaragua by means of mtDNA, Y-chromosome STRs, and autosomal STR markers.

B. Budowle, M. Baeta, C. Núñez, 2010, American journal of physical anthropology.

Precise and ultrafast tandem repeat variant detection in massively parallel sequencing reads

B. Budowle, Jianye Ge, Xuewen Wang, 2023, bioRxiv.

Characterization of 114 insertion/deletion (INDEL) polymorphisms, and selection for a global INDEL panel for human identification.

R. Chakraborty, Chien-Wei Chang, R. Lagacé, 2014, Legal medicine.

Single nucleotide polymorphism typing with massively parallel sequencing for human identification

David H. Warshauer, B. Budowle, J. King, 2013, International Journal of Legal Medicine.

Computational Algorithms and Evidence Interpretation in DNA Forensics based on Genomic Data

Jianye Ge, Jianye Ge, 2009 .

Enhanced mixture interpretation with macrohaplotypes based on long-read DNA sequencing

Bruce Budowle, Jianye Ge, Sammed N. Mandape, 2021, International Journal of Legal Medicine.

Joseon Funerary Texts Tested Using Ancient DNA Analysis of a Korean Mummy

Jun Bum Park, C. Oh, D. Shin, 2015, Anatomical record.

Mutation rates at Y chromosome short tandem repeats in Texas populations.

R. Chakraborty, B. Budowle, J. Planz, 2009, Forensic science international. Genetics.

Variants observed for STR locus SE33: a concordance study.

B. Budowle, J. King, A. Eisenberg, 2012, Forensic science international. Genetics.

Developmental validation of the Yfiler(®) Plus PCR Amplification Kit: An enhanced Y-STR multiplex for casework and database applications.

Jianye Ge, Chang Zhong, R. Lagacé, 2016, Forensic science international. Genetics.

Population genetic analyses of 15 STR loci from seven forensically-relevant populations residing in the state of Kuwait.

B. Budowle, Jianye Ge, Mohammad Al-enizi, 2013, Forensic science international. Genetics.

Prototype PowerPlex® Y23 System: A concordance study.

Patricia M. Fulmer, B. Budowle, Jianye Ge, 2013, Forensic science international. Genetics.

Blind study evaluation illustrates utility of the Ion PGM™ system for use in human identity DNA typing

Bruce Budowle, Jianye Ge, Jonathan L. King, 2015, Croatian medical journal.

Pedigree likelihood ratio for lineage markers

R. Chakraborty, B. Budowle, A. Eisenberg, 2011, International Journal of Legal Medicine.

Mutation rates at 16 Y-chromosome STRs in the South China Han population

Jianye Ge, Hong Liu, Shuanglin Li, 2013, International Journal of Legal Medicine.

Autosomal STR allele frequencies and Y-STR and mtDNA haplotypes in Chilean sample populations

R. Roby, R. Chakraborty, B. Budowle, 2009 .

Genetic study with autosomal STR markers in people of the Peruvian jungle for human identification purposes

B. Budowle, Jianye Ge, Edgardo Delgado Ramos, 2021 .

Future directions of forensic DNA databases

Chao Liu, Bruce Budowle, Haiyan Li, 2014, Croatian medical journal.

TRcaller: a novel tool for precise and ultrafast tandem repeat variant genotyping in massively parallel sequencing reads

B. Budowle, Jianye Ge, Xuewen Wang, 2023, Frontiers in genetics.

Developmental validation of the Huaxia™ Platinum PCR amplification kit: A 6-dye multiplex direct amplification assay designed for Chinese reference samples.

Dennis Y. Wang, R. Lagacé, Jianye Ge, 2019, Forensic science international. Genetics.

Haplotype block: a new type of forensic DNA markers

R. Chakraborty, B. Budowle, J. Planz, 2009, International Journal of Legal Medicine.

Comparisons of Familial DNA Database Searching Strategies

Bruce Budowle, Ranajit Chakraborty, Jianye Ge, 2011, Journal of forensic sciences.

SNP typing using the HID-Ion AmpliSeq™ Identity Panel in a southern Chinese population

Jianye Ge, Hai-xia Li, Ying Wang, 2017, International Journal of Legal Medicine.

Population genetic analyses of the NGM STR loci

Bruce Budowle, Julio Mulero, Ranajit Chakraborty, 2010, International Journal of Legal Medicine.

How many familial relationship testing results could be wrong?

B. Budowle, Jianye Ge, 2020, PLoS genetics.

Genetic study with 21 autosomal STRs in five Peruvian macro regions for human identification purposes.

Jianye Ge, E. Bermejo Valladolid María, Ge Jianye, 2022, Legal medicine.

Population data for 21 STRs for the Salvadoran population using GlobalFiler Express and GlobalFiler STR Amplification Kits

B. Budowle, C. Vullo, Jianye Ge, 2021, International Journal of Legal Medicine.

INNULs: A Novel Design Amplification Strategy for Retrotransposable Elements for Studying Population Variation

Meredith A. Turnbough, B. Budowle, J. King, 2012, Human Heredity.

Linkage and linkage disequilibrium among the markers in the forensic MPS panels

B. Budowle, Jianye Ge, Ran Li, 2021, Journal of forensic sciences.

A complete pipeline enables haplotyping and phasing macrohaplotype in long sequencing reads for polyploidy samples and a multi‐source DNA mixture

Jianye Ge, Xuewen Wang, Melissa K. Muenzler, 2024, Electrophoresis.

MPKin‐YSTR: Interpretation of Y chromosome STR haplotypes for missing persons cases

B. Budowle, Jianye Ge, Xuewen Wang, 2023, Electrophoresis.

Choosing Relatives for DNA Identification of Missing Persons

Bruce Budowle, Ranajit Chakraborty, Jianye Ge, 2011, Journal of forensic sciences.

skater: an R package for SNP-based kinship analysis, testing, and evaluation

August E. Woerner, B. Budowle, Stephen D. Turner, 2021, bioRxiv.

Use of prior odds for missing persons identifications

Bruce Budowle, Ranajit Chakraborty, Jianye Ge, 2011, Investigative Genetics.

Development of Highly Sensitive and Specific mRNA Multiplex System (XCYR1) for Forensic Human Body Fluids and Tissues Identification

Yu Cao, Jianye Ge, Ziqin Zhao, 2014, PloS one.

Determining lineages between individuals with high‐density mitochondrial and Y‐chromosomal single‐nucleotide polymorphisms

Jianye Ge, Austin Chiao, 2023, Electrophoresis.

Texas Population Substructure and Its Impact on Estimating the Rarity of Y STR Haplotypes from DNA Evidence *

R. Chakraborty, B. Budowle, J. Planz, 2009, Journal of forensic sciences.