Marco Punta

发表

The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function

Marco Punta, Yanay Ofran, M. Punta, 2008, PLoS Comput. Biol..

LUD, a new protein domain associated with lactate utilization

Neil D. Rawlings, Alex Bateman, Marco Punta, 2013, BMC Bioinformatics.

New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily

Neil D. Rawlings, Marco Punta, Ruth Y. Eberhardt, 2014, BMC Bioinformatics.

AntiFam: a tool to help identify spurious ORFs in protein annotation

Marco Punta, Maria Jesus Martin, Claire O'Donovan, 2012, Database J. Biol. Databases Curation.

Genome3D: exploiting structure to help users understand their sequences

Marco Punta, Sameer Velankar, Daniel W. A. Buchan, 2015, Nucleic Acids Res..

The challenge of increasing Pfam coverage of the human proteome

Robert D. Finn, Alex Bateman, Marco Punta, 2013, Database J. Biol. Databases Curation.

The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam

Robert D. Finn, Marco Punta, Milton H. Saier, 2015, Briefings Bioinform..

Metal Binding in Proteins: Machine Learning Complements X-Ray Absorption Spectroscopy

Paolo Frasconi, Andrea Passerini, Marco Punta, 2012, ECML/PKDD.

Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 workshop report.

Lennart Martens, Marco Punta, Henning Hermjakob, 2013, Journal of proteomics.

PROFcon: novel prediction of long-range contacts

Burkhard Rost, Marco Punta, B. Rost, 2005, Bioinform..

Natively unstructured regions in proteins identified from contact predictions

Avner Schlessinger, Burkhard Rost, Marco Punta, 2007, Bioinform..

The InterPro protein families database: the classification resource after 15 years

Huaiyu Mi, Robert D. Finn, Matthew Fraser, 2014, Nucleic Acids Res..

Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions

Abhinav Kumar, Marco Punta, Padmaja Natarajan, 2015, BMC Bioinformatics.

Neural Networks Predict Protein Structure and Function

Marco Punta, Burkhard Rost, B. Rost, 2009, Artificial Neural Networks.

The Pfam protein families database: towards a more sustainable future

Robert D. Finn, Sean R. Eddy, Marco Punta, 2015, Nucleic Acids Res..

MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence

Burkhard Rost, Paolo Frasconi, Andrea Passerini, 2008, Bioinform..

InterPro in 2011: new developments in the family and domain prediction database

Robert D. Finn, Matthew Fraser, Cathy H. Wu, 2011, Nucleic acids research.

Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation

Alessandro Laio, Marco Punta, Elena Tea Russo, 2021, BMC Bioinformatics.

Protein folding rates estimated from contact predictions.

Marco Punta, Burkhard Rost, B. Rost, 2005, Journal of molecular biology.

Improved Disorder Prediction by Combination of Orthogonal Approaches

Avner Schlessinger, Marco Punta, Burkhard Rost, 2009, PloS one.

Structural genomics reveals EVE as a new ASCH/PUA‐related domain

Marco Punta, Weihong Zhou, Liang Tong, 2009, Proteins.

PROTEIN INTERACTIONS AND DISEASE

Marco Punta, Yanay Ofran, Predrag Radivojac, 2007 .

Membrane protein prediction methods.

Marco Punta, Burkhard Rost, Lucy R Forrest, 2007, Methods.

Large-scale analysis of thermostable, mammalian proteins provides insights into the intrinsically disordered proteome.

Avner Schlessinger, Marco Punta, Burkhard Rost, 2009, Journal of proteome research.

Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy.

Paolo Frasconi, Marco Punta, Andrea Passerini, 2011, Genome research.

Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery.

Marco Punta, Yanay Ofran, Burkhard Rost, 2005, Drug discovery today.

CASP6 assessment of contact prediction

Jens Meiler, Alfonso Valencia, Marco Punta, 2005, Proteins.

An estimated 5% of new protein structures solved today represent a new Pfam family

Marco Punta, Jaina Mistry, Burkhard Rost, 2013, Acta crystallographica. Section D, Biological crystallography.

Structural genomics target selection for the New York consortium on membrane protein structure

Marco Punta, Burkhard Rost, John F. Hunt, 2009, Journal of Structural and Functional Genomics.

Crystal structure of a phosphorylation-coupled saccharide transporter

Ming Zhou, Marco Punta, Hua Huang, 2011, Nature.

Structural genomics plucks high-hanging membrane proteins.

Marco Punta, Burkhard Rost, Edda Kloppmann, 2012, Current opinion in structural biology.

The New York Consortium on Membrane Protein Structure (NYCOMPS): a high-throughput platform for structural genomics of integral membrane proteins

Marco Punta, Ming Zhou, Thomas Szyperski, 2010, Journal of Structural and Functional Genomics.

Homolog Structure of the SLAC1 Anion Channel for Closing Stomata in Leaves

Marco Punta, Burkhard Rost, Wayne A. Hendrickson, 2010, Nature.

Microenvironmental niche divergence shapes BRCA1-dysregulated ovarian cancer morphological plasticity

Marco Punta, Cecilia Orbegoso, Andrea Sottoriva, 2018, Nature Communications.