Youping Deng

发表

Tissue-associated microbial detection in cancer using human sequencing data

Rebecca M. Rodriguez, Vedbar S. Khadka, Mark Menor, 2020, BMC Bioinformatics.

Development of predicitve models to distinguish metals from non-metal toxicants, and individual metal from one another

Jicai Zhang, Youping Deng, Junmei Ai, 2020, BMC Bioinformatics.

Conference Organizations

Youping Deng, 2006, IMSCCS.

Editorial: Cancer Informatics Toward Precision Medicine

Youping Deng, Fan Zhang, Xiaogang Wu, 2020, Frontiers in Medicine.

Current trend and development in bioinformatics research

Hamid Arabnia, Youping Deng, Yuanyuan Fu, 2020, BMC Bioinformatics.

Diversifying the Genomic Data Science Research Community

AZ, Baltimore, Michael C. Schatz, 2022 .

A Strategy for High Throughput Microarray Oligo Probe Design Using 454 and Sanger Sequencing Data of Eisenia fetida Expressed Sequence Tags

Chaoyang Zhang, Edward J. Perkins, Xin Guan, 2008, BIOCOMP.

Improving prediction accuracy of tumor classification by reusing genes discarded during gene selection

Guo-Zheng Li, Hao-Hua Meng, Youping Deng, 2008, BMC Genomics.

From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite.

Arun Rawat, Youping Deng, Kurt A Gust, 2010, Physiological genomics.

Gene regulation mediated by microRNAs in response to green tea polyphenol EGCG in mouse lung cancer

Hong Wang, Youping Deng, Hong Zhou, 2014, BMC Genomics.

Reconstruct gene regulatory network using slice pattern model

Guohua Wang, Youping Deng, Jack Y. Yang, 2009, BMC Genomics.

Transcriptomic analysis of RDX and TNT interactive sublethal effects in the earthworm Eisenia fetida

Mehdi Pirooznia, Youping Deng, Edward J Perkins, 2008, BMC Genomics.

Detecting differentially methylated loci for Illumina Array methylation data based on human ovarian cancer data

Saralees Nadarajah, Xudong Huang, Youping Deng, 2013, BMC Medical Genomics.

Identification of Plasma Lipid Biomarkers for Prostate Cancer by Lipidomics and Bioinformatics

Charles Pound, Youping Deng, Jinghe Mao, 2012, PloS one.

Promoting synergistic research and education in genomics and bioinformatics

Youping Deng, Jack Y. Yang, Mary Qu Yang, 2008, BMC Genomics.

Transcriptome profiling of Saccharomyces cerevisiae mutants lacking C2H2 zinc finger proteins

Youping Deng, Jinghe Mao, Jack Y. Yang, 2008, BMC Genomics.

A hidden Markov model-based algorithm for identifying tumour subtype using array CGH data

Viswanath Devanarayan, Youping Deng, Linglin Xie, 2011, BMC Genomics.

A gene selection method for GeneChip array data with small sample sizes

Qingzhong Liu, Megan Kong, Richard H Scheuermann, 2011, BMC Genomics.

Extensive Pyrosequencing Reveals Frequent Intra-Genomic Variations of Internal Transcribed Spacer Regions of Nuclear Ribosomal DNA

Youping Deng, Jingyuan Song, Xiaohui Pang, 2012, PloS one.

Supervised learning method for the prediction of subcellular localization of proteins using amino acid and amino acid pair composition

Chaoyang Zhang, Youping Deng, Jack Y. Yang, 2008, BMC Genomics.

Analysis and functional annotation of expressed sequence tags from the fall armyworm Spodoptera frugiperda

Youping Deng, Yinghua Dong, Youping Deng, 2006, BMC Genomics.

A hybrid machine learning-based method for classifying the Cushing's Syndrome with comorbid adrenocortical lesions

Xudong Huang, Youping Deng, Jack Y. Yang, 2008, BMC Genomics.

Integrated lipidomics and transcriptomic analysis of peripheral blood reveals significantly enriched pathways in type 2 diabetes mellitus

Youping Deng, Jinghe Mao, Tieliu Shi, 2013, BMC Medical Genomics.

Global Genetic Cartography of Urban Metagenomes and Anti-Microbial Resistance

Gunnar Rätsch, Emmanuel Dias-Neto, Niranjan Nagarajan, 2019, bioRxiv.

A robust detail preserving anisotropic diffusion for speckle reduction in ultrasound images

Xin Xu, Jinshan Tang, Jun Liu, 2011, BMC Genomics.

Maximizing biomarker discovery by minimizing gene signatures

Weida Tong, Jennifer Fostel, Youping Deng, 2011, BMC Genomics.

Exploring the pathogenetic association between schizophrenia and type 2 diabetes mellitus diseases based on pathway analysis

Youping Deng, Tieliu Shi, Zhenghui Yi, 2013, BMC Medical Genomics.

Recursive SVM biomarker selection for early detection of breast cancer in peripheral blood

Renee Drabier, Fan Zhang, Youping Deng, 2013, BMC Medical Genomics.

ILOOP – a web application for two-channel microarray interwoven loop design

Mehdi Pirooznia, Youping Deng, Edward J Perkins, 2008, BMC Genomics.

Analyzing adjuvant radiotherapy suggests a non monotonic radio-sensitivity over tumor volumes

Youping Deng, Andrzej Niemierko, Jack Y. Yang, 2008, BMC Genomics.

A new approach to construct pathway connected networks and its application in dose responsive gene expression profiles of rat liver regulated by 2,4DNT

Youping Deng, Sudhir Chowbina, Edward J Perkins, 2010, BMC Genomics.

Batch Blast Extractor: an automated blastx parser application

Mehdi Pirooznia, Youping Deng, Edward J Perkins, 2008, BMC Genomics.

Generation and Analysis of Expressed Sequence Tags from the Sheepshead Minnow (Cyprinodon Variegatus)

Chaoyang Zhang, Edward J. Perkins, Ping Gong, 2009, BIOCOMP.

Multiple Biomarker Panels for Early Detection of Breast Cancer in Peripheral Blood

Renee Drabier, Fan Zhang, Youping Deng, 2013, BioMed research international.

Integrative microRNA and gene profiling data analysis reveals novel biomarkers and mechanisms for lung cancer

Qingming Wu, Youping Deng, Yan Li, 2016, Oncotarget.

An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data

Jianhua Ruan, Youping Deng, Edward J Perkins, 2009, BMC Genomics.

Global protein interactome exploration through mining genome-scale data in Arabidopsis thaliana

Peng Li, Youping Deng, Tieliu Shi, 2010, BMC Genomics.

Microarray Data Clustering Using Particle Swarm Optimization K-means Algorithm

Mohamed O. Elasri, Youping Deng, Susan J. Brown, 2005 .

Characterization and Early Detection of Balance Deficits in Fragile X Premutation Carriers With and Without Fragile X-Associated Tremor/Ataxia Syndrome (FXTAS)

Youping Deng, Yan Li, Youping Deng, 2015, The Cerebellum.

A distribution-free convolution model for background correction of oligonucleotide microarray data

Qingzhong Liu, Megan Kong, Richard H Scheuermann, 2009, BMC Genomics.

Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

Gunnar Rätsch, Emmanuel Dias-Neto, Niranjan Nagarajan, 2019, bioRxiv.

The clinical significance of snail protein expression in gastric cancer: a meta-analysis

Hamid R. Arabnia, Jun S. Liu, Youping Deng, 2016, Human Genomics.

Genomic Resources for Karenia brevis

Chaoyang Zhang, Youping Deng, Mehdi Pirooznia, 2009, BIOCOMP.

Toxicogenomic analysis provides new insights into molecular mechanisms of the sublethal toxicity of 2,4,6-trinitrotoluene in Eisenia fetida.

Mehdi Pirooznia, Youping Deng, Edward J Perkins, 2007, Environmental science & technology.