Runyu Jing

发表

Network characteristics of human RNA-RNA interactions and application in the discovery of breast cancer-associated RNAs

Meng-long Li, Yu Liang, Yizhou Li, 2020 .

DeepT3_4: A Hybrid Deep Neural Network Model for the Distinction Between Bacterial Type III and IV Secreted Effectors

Lezheng Yu, Yizhou Li, Jiesi Luo, 2021, Frontiers in Microbiology.

Narrowing the Gap Between In Vitro and In Vivo Genetic Profiles by Deconvoluting Toxicogenomic Data In Silico

Z. Wen, Meng-long Li, Yuan Liu, 2020, Frontiers in Pharmacology.

Comparative analysis of oncogenes identified by microarray and RNA-sequencing as biomarkers for clinical prognosis.

Z. Wen, Meng-long Li, Junmei Xu, 2015, Biomarkers in medicine.

Domain position prediction based on sequence information by using fuzzy mean operator

Meng-long Li, Runyu Jing, Jing Sun, 2015, Proteins.

layerUMAP: A tool for visualizing and understanding deep learning models in biological sequence classification using UMAP

Lezheng Yu, Jiesi Luo, Li Xue, 2022, iScience.

The applications of deep learning algorithms on in silico druggable proteins identification

Lezheng Yu, Yizhou Li, Jiesi Luo, 2022, Journal of advanced research.

The Effect of Edge Definition of Complex Networks on Protein Structure Identification

Di Wu, Menglong Li, Yizhou Li, 2013, Comput. Math. Methods Medicine.

Robust multi-class model constructed for rapid quality control of Cordyceps sinensis

F. Tan, Yizhou Li, Runyu Jing, 2021, Microchemical Journal.

A new strategy for exploring the hierarchical structure of cancers by adaptively partitioning functional modules from gene expression network

Menglong Li, Zhining Wen, Runyu Jing, 2016, Scientific Reports.

Combination use of protein–protein interaction network topological features improves the predictive scores of deleterious non-synonymous single-nucleotide polymorphisms

Meng-long Li, Yizhou Li, L. Ye, 2014, Amino Acids.

Systematic Analysis and Accurate Identification of DNA N4-Methylcytosine Sites by Deep Learning

Lezheng Yu, Jiesi Luo, Li Xue, 2022, Frontiers in Microbiology.

A Multiple Comprehensive Analysis of scATAC-seq Based on Auto-Encoder and Matrix Decomposition

Menglong Li, Runyu Jing, Yizhou Li, 2021, Symmetry.

DeepT3 2.0: improving type III secreted effector predictions by an integrative deep learning framework

Lezheng Yu, Jiesi Luo, Li Xue, 2021, NAR genomics and bioinformatics.

Prediction of disease‐associated functional variants in noncoding regions through a comprehensive analysis by integrating datasets and features

Meng-long Li, Yizhou Li, Yuan Liu, 2021, Human mutation.

Classification of multi-family enzymes by multi-label machine learning and sequence-based descriptors

Menglong Li, Liqiu Huang, Runyu Jing, 2014 .

Predicting gene expression levels from histone modification profiles by a hybrid deep learning network

Meng-long Li, Yizhou Li, Jiesi Luo, 2021, Chemometrics and Intelligent Laboratory Systems.

autoBioSeqpy: A Deep Learning Tool for the Classification of Biological Sequences

Yizhou Li, Li Xue, Jiesi Luo, 2020, J. Chem. Inf. Model..

Predicting deleterious non-synonymous single nucleotide polymorphisms in signal peptides based on hybrid sequence attributes

Di Wu, Juan Li, Menglong Li, 2012, Comput. Biol. Chem..

DeepACP: A Novel Computational Approach for Accurate Identification of Anticancer Peptides by Deep Learning Algorithm

Yizhou Li, Jiesi Luo, Runyu Jing, 2020, Molecular therapy. Nucleic acids.

A Research of Predicting the B-factor Base on the Protein Sequence

Menglong Li, Runyu Jing, Xu Dai, 2014 .

Characteristic wavenumbers of Raman spectra reveal the molecular mechanisms of oral leukoplakia and can help to improve the performance of diagnostic models

Z. Wen, Meng-long Li, X. Pu, 2015 .

Multi-model predictive analysis of RNA solvent accessibility based on modified residual attention mechanism

Meng-long Li, Jiesi Luo, Yuyao Huang, 2022, Briefings Bioinform..

Functional annotation of sixty-five type-2 diabetes risk SNPs and its application in risk prediction

Meng-long Li, Yizhou Li, Yan Li, 2017, Scientific Reports.

PPM-Dom: A novel method for domain position prediction

Menglong Li, Yuelong Wang, Jing Sun, 2013, Comput. Biol. Chem..

Identifying oncogenes as features for clinical cancer prognosis by Bayesian nonparametric variable selection algorithm

Menglong Li, Zhining Wen, Yongning Yang, 2015 .

Fast and Efficient Design of Deep Neural Networks for Predicting N7-Methylguanosine Sites Using autoBioSeqpy

Lezheng Yu, Jiesi Luo, Runyu Jing, 2023, ACS omega.

Evaluation and development of deep neural networks for RNA 5-Methyluridine classifications using autoBioSeqpy

Lezheng Yu, Jiesi Luo, Li Xue, 2023, Frontiers in Microbiology.

Improving Model Performance on the Stratification of Breast Cancer Patients by Integrating Multiscale Genomic Features

Z. Wen, Meng-long Li, Runyu Jing, 2020, BioMed research international.

PML: A parallel machine learning toolbox for data classification and regression

Jing Sun, Xuemei Pu, Yuelong Wang, 2014 .

Multi-models in predicting RNA solvent accessibility exhibit the contribution from none-sequential attributes and providing a globally stable modeling strategy

Yuan Liu, Menglong Li, Yizhou Li, 2020 .