Rintaro Saito

发表

Integrative Features of the Yeast Phosphoproteome and Protein–Protein Interaction Map

Masaru Tomita, Naoyuki Sugiyama, Yasushi Ishihama, 2011, PLoS Comput. Biol..

Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions

Hisashi Kashima, Masaru Tomita, Rintaro Saito, 2010, BMC Bioinformatics.

Construction of reliable protein-protein interaction networks with a new interaction generality measure

Yoshihide Hayashizaki, Rintaro Saito, Harukazu Suzuki, 2003, Bioinform..

Interaction Generality, a Measurement to Assess the Reliability of a Protein-Protein Interaction

Yoshihide Hayashizaki, Rintaro Saito, Masaru Tomita, 2002 .

Translational Efficiency Prediction Using Structural Learning Method

Masaru Tomita, Shinichi Kikuchi, Koya Mori, 2003 .

Variation in the Correlation of G + C Composition with Synonymous Codon Usage Bias among Bacteria

Masaru Tomita, Rintaro Saito, Haruo Suzuki, 2007, EURASIP J. Bioinform. Syst. Biol..

Increasing confidence of protein-protein interactomes.

Mong-Li Lee, Limsoon Wong, See-Kiong Ng, 2006, Genome informatics. International Conference on Genome Informatics.

Analysis of base-pairing potentials between 16S rRNA and 5' UTR for translation initiation in various prokaryotes

Masaru Tomita, Rintaro Saito, Y. Osada, 1999, Bioinform..

Computational Analysis of Stop Codon Readthrough in D.melanogaster

Masaru Tomita, Rintaro Saito, Akio Kanai, 2003, Bioinform..

Measure of synonymous codon usage diversity among genes in bacteria

Masaru Tomita, Rintaro Saito, Haruo Suzuki, 2009, BMC Bioinformatics.

Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data

Masaru Tomita, Yasushi Ishihama, Nozomu Yachie, 2010, BMC Bioinformatics.

Inferring rules of Escherichia coli translational efficiency using an artificial neural network

Masaru Tomita, Shinichi Kikuchi, Koya Mori, 2007, Biosyst..

eXpanda: An Integrated Platform for Network Analysis and Visualization

Masaru Tomita, Hiroyuki Nakamura, Nozomu Yachie, 2007, Silico Biol..

Differences of Translation Termination Sites Among the Three Stop Codons

Masaru Tomita, Rintaro Saito, Yosuke Ozawa, 1999 .

The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer.

Yoshihide Hayashizaki, Rintaro Saito, Christian Schönbach, 2003, Genome research.

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns

Masaru Tomita, Jun Kawai, Piero Carninci, 2010, BMC Genomics.

CDS annotation in full-length cDNA sequence.

Yoshihide Hayashizaki, Takeya Kasukawa, Rintaro Saito, 2003, Genome research.

Interaction generality, a measurement to assess the reliability of a protein-protein interaction.

Yoshihide Hayashizaki, Rintaro Saito, Y. Hayashizaki, 2002, Nucleic acids research.

A new role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene

Masaru Tomita, Atsushi Yoshiki, Rintaro Saito, 2004, Journal of Molecular Medicine.

Computational prediction of nucleosome positioning by calculating the relative fragment frequency index of nucleosomal sequences

Masaru Tomita, Rintaro Saito, Noriyuki Kitagawa, 2010, FEBS letters.

Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data.

Masaru Tomita, Piero Carninci, Yoshihide Hayashizaki, 2002, Genome research.

Computational analysis suggests a highly bendable, fragile structure for nucleosomal DNA.

Masaru Tomita, Nozomu Yachie, Rintaro Saito, 2011, Gene.

On Negative Selection Against ATG Triplets Near Start Codons in Eukaryotic and Prokaryotic Genomes

Masaru Tomita, Rintaro Saito, M. Tomita, 1999, Journal of Molecular Evolution.

Tight associations between transcription promoter type and epigenetic variation in histone positioning and modification

Masaru Tomita, Nozomu Yachie, Rintaro Saito, 2011, BMC Genomics.

A problem in multivariate analysis of codon usage data and a possible solution

Masaru Tomita, Rintaro Saito, M. Tomita, 2005, FEBS letters.

Comparative analysis of base correlations in 5' untranslated regions of various species.

Masaru Tomita, Rintaro Saito, M. Tomita, 2006, Gene.

Genome-wide analysis of expression modes and DNA methylation status at sense-antisense transcript loci in mouse.

Hajime Nakaoka, Rintaro Saito, Kuniya Abe, 2010, Genomics.

The 'weighted sum of relative entropy': a new index for synonymous codon usage bias.

Masaru Tomita, Rintaro Saito, M. Tomita, 2004, Gene.

A Comprehensive Resource of Interacting Protein Regions for Refining Human Transcription Factor Networks

Masaru Tomita, Rintaro Saito, Shigeo Fujimori, 2010, PloS one.

Comparative expression analysis uncovers novel features of endogenous antisense transcription.

Masaru Tomita, Hajime Nakaoka, Rintaro Saito, 2008, Human molecular genetics.

In Silico Analysis of Phosphoproteome Data Suggests a Rich-get-richer Process of Phosphosite Accumulation over Evolution*S

Masaru Tomita, Nozomu Yachie, Rintaro Saito, 2009, Molecular & Cellular Proteomics.

Computational analysis of microRNA targets in Caenorhabditis elegans.

Masaru Tomita, Nozomu Yachie, Rintaro Saito, 2006, Gene.