Y. Ghosheh

发表

Macrophage Polarization: Different Gene Signatures in M1(LPS+) vs. Classically and M2(LPS–) vs. Alternatively Activated Macrophages

K. Ley, A. Pramod, M. Orecchioni, 2019, Front. Immunol..

Hologenome analysis of two marine sponges with different microbiomes

Matt E. Oates, J. Gough, R. Sougrat, 2016, BMC Genomics.

Single Cell RNA Sequencing in Atherosclerosis Research

K. Ley, Jesse W. Williams, Y. Ghosheh, 2020, Circulation research.

Opportunities for an atherosclerosis vaccine: From mice to humans.

Amal J. Ali, K. Ley, Y. Ghosheh, 2020, Vaccine.

Nuclear AGO1 Regulates Gene Expression by Affecting Chromatin Architecture in Human Cells.

Piero Carninci, T. Ravasi, V. Orlando, 2019, Cell systems.

Wiskott-Aldrich syndrome protein forms nuclear condensates and regulates alternative splicing

J. Yates, C. Shao, J. I. Izpisúa Belmonte, 2022, Nature Communications.

Sex Differences in Coronary Artery Disease and Diabetes Revealed by scRNA-Seq and CITE-Seq of Human CD4+ T Cells

K. Ley, L. Lanier, C. Hedrick, 2022, bioRxiv.

Combined protein and transcript single cell RNA sequencing reveals cardiovascular disease and HIV signatures

A. Adimora, K. Ley, L. Lanier, 2020, bioRxiv.

Pathogenic Autoimmunity in Atherosclerosis Evolves From Initially Protective Apolipoprotein B100–Reactive CD4+ T-Regulatory Cells

Amal J. Ali, Bjoern Peters, A. Sette, 2020, Circulation.

Migratory and Dancing Macrophage Subsets in Atherosclerotic Lesions.

K. Ley, A. Pramod, Y. Ghosheh, 2019, Circulation research.

Partial Inhibition of the 6-Phosphofructo-2-Kinase/Fructose-2,6-Bisphosphatase-3 (PFKFB3) Enzyme in Myeloid Cells Does Not Affect Atherosclerosis

P. Carmeliet, J. Saez-Rodriguez, K. Ley, 2021, Frontiers in Cell and Developmental Biology.

Single cell transcriptomics and TCR reconstruction reveal CD4 T cell response to MHC-II-restricted APOB epitope in human cardiovascular disease

K. Anastos, A. Sette, S. Gange, 2022, Nature Cardiovascular Research.

Interferon-λ treatment accelerates SARS-CoV-2 clearance despite age-related delays in the induction of T cell immunity

A. Gehring, J. Feld, B. Hansen, 2022, Nature Communications.

Combined protein and transcript single-cell RNA sequencing in human peripheral blood mononuclear cells

A. Adimora, K. Ley, L. Lanier, 2020, BMC Biology.

Meta-Analysis of Leukocyte Diversity in Atherosclerotic Mouse Aortas

M. Cybulsky, K. Ley, A. Zernecke, 2020, Circulation research.

Characterization of piRNAs across postnatal development in mouse brain

Piero Carninci, T. Ravasi, Hazuki Takahashi, 2016, Scientific Reports.

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Martin S. Taylor, Jay W. Shin, Thomas J. Ha, 2021, Nature Communications.

Normalization of cholesterol metabolism in spinal microglia alleviates neuropathic pain

K. Ley, Soo-Ho Choi, I. Kufareva, 2021, The Journal of experimental medicine.

AGO1 in association with NEAT1 lncRNA contributes to nuclear and 3D chromatin architecture in human cells

Piero Carninci, T. Ravasi, V. Orlando, 2019, bioRxiv.

Atherosclerosis in the single-cell era

K. Ley, Y. Ghosheh, D. Wolf, 2018, Current opinion in lipidology.

Single-cell transcriptomes and T cell receptors of vaccine-expanded apolipoprotein B-specific T cells

K. Ley, D. Zajonc, M. Jenkins, 2023, Frontiers in Cardiovascular Medicine.

Transcriptome analysis elucidates key developmental components of bryozoan lophophore development

S. Bougouffa, T. Ravasi, P. Qian, 2014, Scientific Reports.

Molecular processes of transgenerational acclimation to a warming ocean

T. Ravasi, P. Munday, T. Ryu, 2015 .

Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

T. Ravasi, P. Qian, Sarah Al-Aqeel, 2015, BMC Genomics.

Pegylated-interferon-{lambda} treatment-induced peripheral interferon stimulated genes are associated with SARS-CoV-2 viral load decline despite delayed T cell response in older individuals

A. Gehring, J. Feld, Y. Ghosheh, 2022, medRxiv.

Olfactory receptor 2 in vascular macrophages drives atherosclerosis by NLRP3-dependent IL-1 production

Amal J. Ali, S. Hazen, K. Ley, 2022, Science.

Chemokine Receptor Activation Enhances Memory B Cell Class Switching Linked to IgE Sensitization to Alpha Gal and Cardiovascular Disease

Jeffrey M. Wilson, K. Ley, T. Platts-Mills, 2022, Frontiers in Cardiovascular Medicine.

Classical Monocyte Transcriptomes Reveal Significant Anti-Inflammatory Statin Effect in Women with Chronic HIV.

Mardge H. Cohen, K. Anastos, S. Gange, 2020, Cardiovascular research.

High-Affinity Bent β2-Integrin Molecules in Arresting Neutrophils Face Each Other through Binding to ICAMs In cis

K. Ley, A. Groisman, M. Arnaout, 2019, Cell reports.

Corrigendum: Macrophage Polarization: Different Gene Signatures in M1(LPS+) vs. Classically and M2(LPS–) vs. Alternatively Activated Macrophages

K. Ley, A. Pramod, M. Orecchioni, 2020, Frontiers in Immunology.

Efficacy of antiviral therapy and host–virus interactions visualised using serial liver sampling with fine-needle aspirates

A. Gehring, J. Feld, Y. Ghosheh, 2023, JHEP reports : innovation in hepatology.

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2021 .

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2021 .

HIV infection and cardiovascular disease have both shared and distinct monocyte gene expression features: Women’s Interagency HIV study

Mardge H. Cohen, K. Anastos, S. Gange, 2023, PloS one.

Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

T. Ravasi, P. Qian, Sarah Al-Aqeel, 2015, BMC Genomics.

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2022 .