Christopher Flerin

Prioritization of enhancer mutations by combining allele-specific chromatin accessibility with deep learning

S. Aerts, V. Christiaens, Z. Atak, 2019, bioRxiv.

A scalable SCENIC workflow for single-cell gene regulatory network analysis

Yvan Saeys, Robrecht Cannoodt, Wouter Saelens, 2020, Nature Protocols.

Interpretation of allele-specific chromatin accessibility using cell state–aware deep learning

S. Aerts, V. Christiaens, Gert Hulselmans, 2021, Genome research.

HyDrop: droplet-based scATAC-seq and scRNA-seq using dissolvable hydrogel beads

S. Aerts, Jasper Janssens, V. Christiaens, 2021, bioRxiv.

Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads

S. Aerts, Jasper Janssens, V. Christiaens, 2022, eLife.

A scalable SCENIC workflow for single-cell gene regulatory network analysis

Y. Saeys, S. Aerts, R. Seurinck, 2020, Nature Protocols.