K. Tu

发表

Broadly predicting specific gene functions with expression similarity and taxonomy similarity.

Zheng Guo, Lei Gao, Hui Yu, 2005, Gene.

Machine learning approaches for electronic health records phenotyping: A methodical review

Jessica L. Gronsbell, K. Tu, P. Varghese, 2022, medRxiv.

Diagnostic and prognostic implications of microRNAs in human hepatocellular carcinoma

Jianren Gu, Xianghuo He, Haiyang Xie, 2008, International journal of cancer.

DigOut: viewing differential expression genes as outliers.

Lu Xie, Yuanyuan Li, Hui Yu, 2010, Journal of bioinformatics and computational biology.

Gene expression module-based chemical function similarity search

Yixue Li, Ruixin Zhu, C. Dong, 2008, Nucleic acids research.

Localized-Statistical Quantification of Human Serum Proteome Associated with Type 2 Diabetes

Rong Zeng, Jie Dai, Su-Jun Li, 2008, PloS one.

Proteomic mining in the dysplastic liver of WHV/c‐myc mice – insights and indicators for early hepatocarcinogenesis

Chen Li, R. Zeng, Qingrun Li, 2010, The FEBS journal.

MiRE: a graphical R package for microRNA-related analysis.

Y. Gong, B. Yin, B. Qiang, 2008, Chinese medical sciences journal = Chung-kuo i hsueh k'o hsueh tsa chih.

Adipogenesis licensing and execution are disparately linked to cell proliferation

Wei Guo, Jiarui Wu, Li Zhu, 2009, Cell Research.

Using GeneReg to construct time delay gene regulatory networks

Lei Liu, Tao Huang, Ziliang Qian, 2010, BMC Research Notes.

Analysis of the dermatophyte Trichophyton rubrum expressed sequence tags

Yixue Li, Q. Jin, Yan Shen, 2006, BMC Genomics.

The use of global transcriptional analysis to reveal the biological and cellular events involved in distinct development phases of Trichophyton rubrum conidial germination

Yixue Li, Q. Jin, Yan Shen, 2007, BMC Genomics.

Morphological Responses of Prostatic Carcinoma to Testosterone in Organ Culture

Yixue Li, G. Thomas, Hui Yu, 1972, British Journal of Cancer.

Combinatorial network of primary and secondary microRNA-driven regulatory mechanisms

Lei Liu, Lu Xie, Yi-Xue Li, 2009, Nucleic acids research.

Identification and target prediction of miRNAs specifically expressed in rat neural tissue

Lu Xie, Li Zhu, Yi-xue Li, 2009, BMC Genomics.

Improving the prediction of human microRNA target genes by using ensemble algorithm

Boqin Qiang, Jiangang Yuan, Xiaozhong Peng, 2007, FEBS letters.

A splicing-independent function of SF2/ASF in microRNA processing.

A. Krainer, Shuying Sun, Bin Xie, 2010, Molecular cell.

Combinatorial network of transcriptional regulation and microRNA regulation in human cancer

Hui Yu, Yixue Li, Yuan-Yuan Li, 2012, BMC Systems Biology.

Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance

Hui Yu, Yixue Li, Yuan-Yuan Li, 2006, PLoS Comput. Biol..

MEGO: gene functional module expression based on gene ontology.

Mingzhu Zhu, Hui Yu, Kang Tu, 2005, BioTechniques.

Learnability-based further prediction of gene functions in Gene Ontology.

Zheng Guo, Xia Li, Hui Yu, 2004, Genomics.

Expression of miRNAs and Their Cooperative Regulation of the Pathophysiology in Traumatic Brain Injury

Zheng Li, A. Marini, L. Eiden, 2012, PloS one.

ITFP: an integrated platform of mammalian transcription factors

Qing Yang, Chaochun Wei, Yangyong Zhu, 2008, Bioinform..

Comparison of normalization methods with microRNA microarray.

Yi-xue Li, H. Xiao, K. Tu, 2008, Genomics.

The Prevalence and Regulation of Antisense Transcripts in Schizosaccharomyces pombe

S. Grewal, Yuan Gao, Bin Xie, 2010, PloS one.

Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data

Hui Yu, Feng Wang, Yixue Li, 2007, BMC Bioinformatics.

The prediction of interferon treatment effects based on time series microarray gene expression profiles

Yu Shyr, Tao Huang, Lu Xie, 2008, Journal of Translational Medicine.

miR-191 and miR-135 are required for long-lasting spine remodeling associated with synaptic long term depression

Danni Yu, Jun Zhu, Qinhua Gu, 2014, Nature Communications.

The contribution of cis-regulatory elements to head-to-head gene pairs’ co-expression pattern

Pei Hao, Pei Hao, K. Tu, 2009, Science in China Series C: Life Sciences.

Bioinformatics Applications Note Gene Expression Dcgl: an R Package for Identifying Differentially Coexpressed Genes and Links from Gene Expression Microarray Data

Hui Yu, Yixue Li, Yuan-Yuan Li, 2022 .

cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets

Chaochun Wei, Hui Yu, Yixue Li, 2013, BMC Systems Biology.

GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction

Yao Yu, Yun Li, Yixue Li, 2009, BMC Bioinformatics.

cGRNexp: a web platform for building combinatorial gene regulation networks based on user-uploaded gene expression datasets

Chaochun Wei, Hui Yu, Yixue Li, 2012, 2012 IEEE 6th International Conference on Systems Biology (ISB).

Human gene expression sensitivity according to large scale meta-analysis

Christian Gieger, Yang Zhong, Yixue Li, 2009, BMC Bioinformatics.

ITFP: an integrated platform of mammalian transcription factors

Yixue Li, Qing Yang, Chaochun Wei, 2008, Bioinform..

Combining gene expression profiles and protein-protein interaction data to infer gene functions.

Hui Yu, Yi-xue Li, K. Tu, 2006, Journal of biotechnology.