Albert Sickmann

发表

Catch Me if You Can: Challenges and Applications of Cross-Linking Approaches

Verena Tinnefeld, Albert Sickmann, Robert Ahrends, 2014, European journal of mass spectrometry.

iTRAQ Data Interpretation

Lennart Martens, Marc Vaudel, Albert Sickmann, 2012, Quantitative Methods in Proteomics.

Efficient Analysis and Extraction of MS/MS Result Data from Mascot Result Files

Albert Sickmann, Andreas M. Böhm, Florian Grosse-Coosmann, 2005 .

The parameters for batch-mode enabling wiff2dta being integrated in automated environments

Albert Sickmann, Andreas M. Boehm, Robert P Galvin, 2011 .

Standardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies

Hongwen Zhu, Bernd Wollscheid, Albert Sickmann, 2020, Nature Communications.

Automatic Synchronizing and self-Updating Protein Sequence Database Management System

Albert Sickmann, Andreas Bhm, 2004 .

A Tool for Analyzing and Tuning Relational Database Applications: SQL Query Analyzer and Schema EnHancer (SQUASH)

Dietmar Seipel, Albert Sickmann, Andreas M. Boehm, 2006, Grundlagen von Datenbanken.

Peptide and protein quantification: A map of the minefield

Lennart Martens, Marc Vaudel, Albert Sickmann, 2010, Proteomics.

Efficient analysis and extraction of MS/MS result data from Mascot™ result files

Albert Sickmann, Florian Grosse-Coosmann, Andreas M. Boehm, 2005, BMC Bioinformatics.

PeptideShaker enables reanalysis of MS-derived proteomics data sets

Eystein Oveland, Lennart Martens, Frode S Berven, 2015, Nature Biotechnology.

Command line tool for calculating theoretical MS spectra for given sequences

Albert Sickmann, Florian Grosse-Coosmann, Andreas M. Boehm, 2004, Bioinform..

XTandem Parser: An open‐source library to parse and analyse X!Tandem MS/MS search results

Lennart Martens, Harald Barsnes, Marc Vaudel, 2010, Proteomics.

Computational proteomics tools for identification and quality control.

Albert Sickmann, Dominik Kopczynski, Robert Ahrends, 2017, Journal of biotechnology.

A comprehensive dictionary of protein accession codes for complete protein accession identifier alias resolving

Albert Sickmann, Andreas M. Boehm, Andreas M Boehm, 2006, Proteomics.

compomics-utilities: an open-source Java library for computational proteomics

Lennart Martens, Harald Barsnes, Marc Vaudel, 2011, BMC Bioinformatics.

Method and platform standardization in MRM-based quantitative plasma proteomics.

Christoph H Borchers, Albert Sickmann, Andrew J Percy, 2013, Journal of proteomics.

N-glycoproteomics: mass spectrometry-based glycosylation site annotation

Albert Sickmann, Yvonne Pasing, Urs Lewandrowski, 2012, Biological chemistry.

DISMS2: A flexible algorithm for direct proteome- wide distance calculation of LC-MS/MS runs

Jörg Rahnenführer, Albert Sickmann, Markus Pfenninger, 2017, BMC Bioinformatics.

SearchGUI: An open‐source graphical user interface for simultaneous OMSSA and X!Tandem searches

Lennart Martens, Frode S Berven, Harald Barsnes, 2011, Proteomics.

Squash: A Tool for Analyzing, Tuning and Refactoring Relational Database Applications

Dietmar Seipel, Albert Sickmann, Andreas M. Boehm, 2007, INAP/WLP.

Extractor for ESI quadrupole TOF tandem MS data enabled for high throughput batch processing

Albert Sickmann, Andreas M. Boehm, Robert P. Galvin, 2004, BMC Bioinformatics.

Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process

Knut Reinert, Ralf Herwig, Hans Lehrach, 2005, BMC Bioinformatics.

Standardization and Harmonization of Distributed Multi-National Proteotype Analysis supporting Precision Medicine Studies

Connie R. Jimenez, Sander R. Piersma, Hongwen Zhu, 2020, bioRxiv.

SQUASH: A Tool for Analyzing and Tuning Biological Relational Database Systems

Dietmar Seipel, Albert Sickmann, Andreas M. Böhm, 2005 .

Robust Workflow for iTRAQ-Based Peptide and Protein Quantification

Albert Sickmann, Julia Maria Burkhart, René Peiman Zahedi, 2012, Quantitative Methods in Proteomics.

Proteomics – moving from inventory to personalized medicine?

Marius Ueffing, Albert Sickmann, René P Zahedi, 2014, Proteomics.

Thermo-msf-parser: an open source Java library to parse and visualize Thermo Proteome Discoverer msf files.

Lennart Martens, Harald Barsnes, Marc Vaudel, 2011, Journal of proteome research.

ms_lims, a simple yet powerful open source laboratory information management system for MS‐driven proteomics

Lennart Martens, Harald Barsnes, An Staes, 2010, Proteomics.

Precise protein quantification based on peptide quantification using iTRAQ™

Albert Sickmann, Andreas M. Boehm, Michael Falk, 2007, BMC Bioinformatics.

OMSSA Parser: An open‐source library to parse and extract data from OMSSA MS/MS search results

Lennart Martens, Harald Barsnes, Albert Sickmann, 2009, Proteomics.

PeptideMapper: efficient and versatile amino acid sequence and tag mapping

Harald Barsnes, Marc Vaudel, Albert Sickmann, 2017, Bioinform..

Mouse Quantitative Proteomics Knowledgebase: reference protein concentration ranges in 20 mouse tissues using 5000 quantitative proteomics assays

Yassene Mohammed, Albert Sickmann, Christoph H. Borchers, 2021, Bioinform..

The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways.

Lennart Martens, Marc Vaudel, Albert Sickmann, 2012, Blood.

Systematic and quantitative comparison of digest efficiency and specificity reveals the impact of trypsin quality on MS-based proteomics.

Albert Sickmann, Julia Maria Burkhart, René Peiman Zahedi, 2012, Journal of Proteomics.

Mitochondrial Presequence Translocase: Switching between TOM Tethering and Motor Recruitment Involves Tim21 and Tim17

Albert Sickmann, Helmut E. Meyer, N. Pfanner, 2005, Cell.

Current methods for global proteome identification

Lennart Martens, Marc Vaudel, Albert Sickmann, 2012, Expert review of proteomics.

Detecting post-translational modification signatures as potential biomarkers in clinical mass spectrometry

Christoph H Borchers, Albert Sickmann, René P Zahedi, 2018, Expert review of proteomics.

Challenges in mass spectrometry‐based proteomics

Albert Sickmann, Urs Lewandrowski, A. Sickmann, 2004, Proteomics.

PeptideTracker: A knowledge base for collecting and storing information on protein concentrations in biological tissues

Yassene Mohammed, Christoph H Borchers, Albert Sickmann, 2017, Proteomics.

Laser-induced dissociation/high-energy collision-induced dissociation fragmentation using MALDI-TOF/TOF-MS instrumentation for the analysis of neutral and acidic oligosaccharides.

Albert Sickmann, Anja Resemann, Urs Lewandrowski, 2005, Analytical chemistry.

Identification of proteins involved in inhibition of spheroid formation under microgravity

Albert Sickmann, Ganna Aleshcheva, Daniela Grimm, 2015, Proteomics.

State‐of‐the‐art in phosphoproteomics

Albert Sickmann, A. Sickmann, J. Reinders, 2005, Proteomics.

A Comprehensive Interaction Map of the Human Survival of Motor Neuron (SMN) Complex*

Utz Fischer, Albert Sickmann, Ashwin Chari, 2007, Journal of Biological Chemistry.

Composition and topology of the endoplasmic reticulum-mitochondria encounter structure.

Albert Sickmann, Bettina Warscheid, Sebastian Wiese, 2011, Journal of molecular biology.

LILY-lipidome isotope labeling of yeast: in vivo synthesis of 13C labeled reference lipids for quantification by mass spectrometry.

Evelyn Rampler, Albert Sickmann, Gunda Koellensperger, 2017, The Analyst.

Phosphoproteomics—More than meets the eye

Albert Sickmann, R. Zahedi, A. Sickmann, 2013, Electrophoresis.

Identification of key lipids critical for platelet activation by comprehensive analysis of the platelet lipidome.

Canan Has, Albert Sickmann, Florian Lang, 2018, Blood.

Conformational Switch and Role of Phosphorylation in PAK Activation

Helmut E. Meyer, Albert Sickmann, Markus G. Rudolph, 2001, Molecular and Cellular Biology.

The good, the bad, the ugly: Validating the mass spectrometric analysis of modified peptides

Albert Sickmann, René Peiman Zahedi, Jörg Geiger, 2011, Proteomics.

The FERM protein EPB41L5 regulates actomyosin contractility and focal adhesion formation to maintain the kidney filtration barrier

Albert Sickmann, Shinichi Aizawa, Jörn Dengjel, 2017, Proceedings of the National Academy of Sciences.

Profiling Phosphoproteins of Yeast Mitochondria Reveals a Role of Phosphorylation in Assembly of the ATP Synthase*S

Albert Sickmann, Jörg Reinders, Martin van der Laan, 2007, Molecular & Cellular Proteomics.

A complex standard for protein identification, designed by evolution.

Lennart Martens, Marc Vaudel, Albert Sickmann, 2012, Journal of proteome research.

Tyrosine Phosphorylation Modulates the Activity of TRPV4 in Response to Defined Stimuli*

Albert Sickmann, Gerd Walz, Urs Lewandrowski, 2009, Journal of Biological Chemistry.

Enhanced N-Glycosylation Site Analysis of Sialoglycopeptides by Strong Cation Exchange Prefractionation Applied to Platelet Plasma Membranes *S

Albert Sickmann, René P Zahedi, Urs Lewandrowski, 2007, Molecular & Cellular Proteomics.

Comparison and Evaluation of Clustering Algorithms for Tandem Mass Spectra.

Albert Sickmann, Jörg Rahnenführer, Bernhard Blank-Landeshammer, 2017, Journal of proteome research.

Temporal quantitative phosphoproteomics of ADP stimulation reveals novel central nodes in platelet activation and inhibition.

Albert Sickmann, Christian Fufezan, Stepan Gambaryan, 2017, Blood.

Proteomics : methods and protocols

Albert Sickmann, Jörg Reinders, A. Sickmann, 2009 .

iTRAQ analysis of a cell culture model for malignant transformation, including comparison with 2D-PAGE and SILAC.

Albert Sickmann, Andreas M. Boehm, Andreas M Boehm, 2012, Journal of proteome research.

Protein Insertion into the Mitochondrial Inner Membrane by a Twin-Pore Translocase

Albert Sickmann, Peter Kovermann, W. Kühlbrandt, 2003, Science.

The Catalytic Activity of Protein-disulfide Isomerase Requires a Conformationally Flexible Molecule*

Hermann Schindelin, Albert Sickmann, Urs Lewandrowski, 2008, Journal of Biological Chemistry.

Elucidation of N-Glycosylation Sites on Human Platelet Proteins

Albert Sickmann, Urs Lewandrowski, U. Walter, 2006, Molecular & Cellular Proteomics.

The proteome of Saccharomyces cerevisiae mitochondria

Albert Sickmann, Jörg Reinders, Helmut E. Meyer, 2003, Proceedings of the National Academy of Sciences of the United States of America.

jTraqX: A free, platform independent tool for isobaric tag quantitation at the protein level

Thilo Muth, Lennart Martens, Albert Sickmann, 2010, Proteomics.

Current strategies and findings in clinically relevant post-translational modification-specific proteomics

Albert Sickmann, René P Zahedi, R. Zahedi, 2015, Expert review of proteomics.

Feedback of the Kinesin-1 Neck-linker Position on the Catalytic Site*

Albert Sickmann, Jörg Reinders, A. Sickmann, 2006, Journal of Biological Chemistry.

Glycosylation Site Analysis of Human Platelets by Electrostatic Repulsion Hydrophilic Interaction Chromatography

Dirk Wolters, Albert Sickmann, Urs Lewandrowski, 2008, Clinical Proteomics.

Applications of highly sensitive phosphopeptide derivatization methods without the need for organic solvents

Helmut E Meyer, Albert Sickmann, A. Sickmann, 2006, Proteomics.

N-glycosylation site analysis of human platelet proteins by hydrazide affinity capturing and LC-MS/MS.

Albert Sickmann, Urs Lewandrowski, A. Sickmann, 2009, Methods in molecular biology.

Integral quantification accuracy estimation for reporter ion-based quantitative proteomics (iQuARI).

Lennart Martens, Marc Vaudel, Albert Sickmann, 2012, Journal of proteome research.

Pam17 Is Required for Architecture and Translocation Activity of the Mitochondrial Protein Import Motor

Albert Sickmann, Helmut E. Meyer, Martin van der Laan, 2005, Molecular and Cellular Biology.

Proteomic analysis of the yeast mitochondrial outer membrane reveals accumulation of a subclass of preproteins.

Albert Sickmann, Andreas M. Boehm, Andreas M Boehm, 2005, Molecular biology of the cell.

Silver‐ and Coomassie‐staining protocols: Detection limits and compatibility with ESI MS

Albert Sickmann, A. Sickmann, C. Winkler, 2007, Electrophoresis.

Evolution of an RNP assembly system: A minimal SMN complex facilitates formation of UsnRNPs in Drosophila melanogaster

Utz Fischer, Albert Sickmann, Ashwin Chari, 2008, Proceedings of the National Academy of Sciences.

Inhibition of proinflammatory and innate immune signaling pathways by a cytomegalovirus RIP1-interacting protein

Albert Sickmann, A. Sickmann, D. Lembo, 2008, Proceedings of the National Academy of Sciences.

Mass spectrometry-based peptide quantification: applications and limitations

Albert Sickmann, Yvonne Reinders, A. Sickmann, 2005, Expert review of proteomics.

Mass spectrometry--a key technology in proteome research.

Helmut E Meyer, Albert Sickmann, A. Sickmann, 2003, Advances in biochemical engineering/biotechnology.

Simultaneous Metabolite, Protein, Lipid Extraction (SIMPLEX): A Combinatorial Multimolecular Omics Approach for Systems Biology*

Albert Sickmann, René Peiman Zahedi, Robert Ahrends, 2016, Molecular & Cellular Proteomics.

Quality control of nano‐LC‐MS systems using stable isotope‐coded peptides

Albert Sickmann, Julia Maria Burkhart, A. Sickmann, 2011, Proteomics.

Time-resolved characterization of cAMP/PKA-dependent signaling reveals that platelet inhibition is a concerted process involving multiple signaling pathways.

Lennart Martens, Oliver Kohlbacher, Marc Vaudel, 2014, Blood.

Multiple pathways for sorting mitochondrial precursor proteins

Albert Sickmann, N. Pfanner, A. Sickmann, 2008, EMBO reports.

Multidimensional nano-HPLC for analysis of protein complexes

Helmut E Meyer, Albert Sickmann, A. Sickmann, 2003, Journal of the American Society for Mass Spectrometry.

Introduction to opportunities and pitfalls in functional mass spectrometry based proteomics.

Lennart Martens, Marc Vaudel, Albert Sickmann, 2014, Biochimica et biophysica acta.

iTRAQ protein quantification: A quality‐controlled workflow

Lennart Martens, Marc Vaudel, Albert Sickmann, 2011, Proteomics.