Phil Arnold

发表

ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs

Piotr J. Balwierz, E. van Nimwegen, M. Zavolan, 2014, Genome research.

of regulatory motifs ISMARA : automated modeling of genomic signals as a democracy Material Supplemental

Piotr J. Balwierz, M. Zavolan, E. Nimwegen, 2014 .

Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs

E. van Nimwegen, S. Salatino, Nicholas Kelley, 2018, bioRxiv.

Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting

Mikhail Pachkov, Phil Arnold, Michael B. Stadler, 2013, Genome research.

SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates

Mikhail Pachkov, Phil Arnold, Erik van Nimwegen, 2012, Nucleic Acids Res..

Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming.

Piotr J. Balwierz, E. van Nimwegen, D. Schübeler, 2013, Cancer cell.

Crunch: Completely Automated Analysis of ChIP-seq Data

Severin Berger, Saeed Omidi, Mikhail Pachkov, 2016 .

Tead2 expression levels control the subcellular distribution of Yap and Taz, zyxin expression and epithelial–mesenchymal transition

E. van Nimwegen, Philipp Berninger, G. Christofori, 2014, Journal of Cell Science.

Correction: Klf4 Is a Transcriptional Regulator of Genes Critical for EMT, Including Jnk1 (Mapk8)

E. van Nimwegen, G. Christofori, N. Tiwari, 2013, PLoS ONE.

Klf4 Is a Transcriptional Regulator of Genes Critical for EMT, Including Jnk1 (Mapk8)

E. van Nimwegen, G. Christofori, N. Tiwari, 2013, PloS one.

MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences

Mikhail Pachkov, Phil Arnold, Erik van Nimwegen, 2012, Bioinform..

Creating small but meaningful representations of digital pathology images

B. Torben-Nielsen, Phil Arnold, Corentin Guérendel, 2021, COMPAY@MICCAI.