Ying-Chieh Lu

发表

Data-driven detection of subtype-specific differentially expressed genes

R. Clarke, D. Herrington, J. V. Van Eyk, 2021, Scientific reports.

COT: an efficient Python tool for detecting marker genes among many subtypes

Sarah J. Parker, D. Herrington, J. V. Van Eyk, 2021, bioRxiv.

Secretomic and proteomic analysis of potential breast cancer markers by two-dimensional differential gel electrophoresis.

Yi-Wen Chen, H. Chou, H. Chan, 2010, Journal of proteome research.

Hemopexin is up-regulated in plasma from type 1 diabetes mellitus patients: Role of glucose-induced ROS.

Yi-Wen Chen, J. Timms, You-Hsuan Chen, 2012, Journal of proteomics.

Plasma proteomic analysis of the critical limb ischemia markers in diabetic patients with hemodialysis.

P. Lyu, Yi-Wen Chen, H. Chou, 2011, Molecular bioSystems.

Proteomic and redox-proteomic analysis of berberine-induced cytotoxicity in breast cancer cells.

P. Lyu, Yi-Wen Chen, J. Timms, 2012, Journal of proteomics.

COT: an efficient and accurate method for detecting marker genes among many subtypes

Sarah J. Parker, D. Herrington, J. V. Van Eyk, 2022, Bioinformatics advances.

Trypsin-induced proteome alteration during cell subculture in mammalian cells

P. Lyu, Yi-Wen Chen, H. Chou, 2010, Journal of Biomedical Science.

Integrated Identification of Disease Specific Pathways Using Multi-omics data

Robert Clarke, David M. Herrington, Eric P. Hoffman, 2019, bioRxiv.

Multi-omics Data Integration for Identifying Disease Specific Biological Pathways

Ying-Chieh Lu, 2018 .

Proteomic analysis of gemcitabine-induced drug resistance in pancreatic cancer cells.

P. Lyu, Yi-Wen Chen, You-Hsuan Chen, 2011, Molecular bioSystems.

Mitochondrial proteomics analysis of tumorigenic and metastatic breast cancer markers

P. Lyu, Yi-Wen Chen, H. Chou, 2011, Functional & Integrative Genomics.

Data-driven detection of subtype-specific differentially expressed genes

Yue Wang, David M. Herrington, Lulu Chen, 2019, bioRxiv.

DDN2.0: R and Python packages for differential dependency network analysis of biological systems

R. Clarke, D. Herrington, J. V. Van Eyk, 2021, bioRxiv.

Cosbin: cosine score-based iterative normalization of biologically diverse samples

Sarah J. Parker, D. Herrington, J. V. Van Eyk, 2022, Bioinformatics advances.

Proteome differences between male and female fetal cells in amniotic fluid.

Chih-ping Chen, Yi-Wen Chen, S. Chern, 2013, Omics : a journal of integrative biology.

Data-driven detection of subtype-specific differentially expressed genes

Yue Wang, Guoqiang Yu, Lulu Chen, 2021, Scientific Reports.