W. Shao

L. Morris, A. Sönnerborg, F. Maldarelli, 2013, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Identification of RNA Editing Sites in Chimpanzee by Transcriptome-wide Sequencing Data*: Identification of RNA Editing Sites in Chimpanzee by Transcriptome-wide Sequencing Data*

W. Shao, Li Wang, Duangui Wang, 2012 .

PAPNC, a novel method to calculate nucleotide diversity from large scale next generation sequencing data.

J. Mellors, J. Coffin, F. Maldarelli, 2014, Journal of virological methods.

Autologous or allogeneic hematopoietic stem cells transplantation combined with high-dose chemotherapy for refractory neuroblastoma

W. Shao, Ji-Ke Liu, Zhan-Xue Zhao, 2021, Medicine.

Early Emergence and Long-Term Persistence of HIV-Infected T-Cell Clones in Children

S. Hughes, J. Mellors, J. Coffin, 2021, mBio.

Early Emergence and Long-Term Persistence of HIV-Infected T Cell Clones in Children

S. Hughes, J. Mellors, J. Coffin, 2020, bioRxiv.

Allotransplantation of Sulphate Glucomannan-Alginate Barium (SGA)-Microencapsulated Rat Islets for the Treatment of Diabetes Mellitus

Zhong-quan Qi, W. Shao, Jibing Chen, 2009, Immunological investigations.

The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time

P. Lemey, F. Hecht, D. Douek, 2013, Proceedings of the National Academy of Sciences.

Combined HIV-1 sequence and integration site analysis informs viral dynamics and allows reconstruction of replicating viral ancestors

Michele D. Sobolewski, Wei-Shau Hu, S. Hughes, 2019, Proceedings of the National Academy of Sciences.

Oral abstracts of the 21st International AIDS Conference 18–22 July 2016, Durban, South Africa

Michael I. Jordan, Donald A. Jackson, J. G. Ndirangu, 2016, Journal of the International AIDS Society.

Small Islets are Essential for Successful Intraportal Transplantation in a Diabetes Mouse Model

M. Corbascio, H. Ekberg, S. Tai, 2010, Scandinavian journal of immunology.

Suppressing memory T cell activation induces islet allograft tolerance in alloantigen‐primed mice

H. Thorlacius, W. Shao, Z. Qi, 2010, Transplant international : official journal of the European Society for Organ Transplantation.

Multiple Sources of Contamination in Samples from Patients Reported to Have XMRV Infection

S. Hughes, J. Mellors, J. Coffin, 2012, PloS one.

No evidence of ongoing HIV replication or compartmentalization in tissues during combination antiretroviral therapy: Implications for HIV eradication

Z. Grossman, D. Kleiner, R. Gorelick, 2019, Science Advances.

Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA

J. Mellors, B. Luke, J. Coffin, 2016, Retrovirology.

Proceedings of the Frontiers of Retrovirology Conference 2016

R. König, D. Elleder, R. Sachidanandam, 2016, Retrovirology.

HIV Populations Are Large and Accumulate High Genetic Diversity in a Nonlinear Fashion

R. Stephens, J. Metcalf, R. Davey, 2013, Journal of Virology.

1 HIV Populations are Large and Accumulate High Genetic Diversity in Nonlinear

R. Stephens, J. Metcalf, R. Davey, 2013 .

Nature, Position, and Frequency of Mutations Made in a Single Cycle of HIV-1 Replication

S. Hughes, W. Alvord, A. Ferris, 2010, Journal of Virology.

Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA

Claudia Stewart, Natalia Volfovsky, Wei Shao, 2013, Retrovirology.

Immunosuppressive Effect of Compound K on Islet Transplantation in an STZ-Induced Diabetic Mouse Model

Mei-Chun Cai, Zhong-quan Qi, Ying-ying Lin, 2014, Diabetes.

An analytical pipeline for identifying and mapping the integration sites of HIV and other retroviruses

S. Hughes, J. Coffin, Xiaolin Wu, 2020, BMC Genomics.

Combined application of blocking antibodies and MicroRNA interference in inhibiting CD44 expression.

W. Shao, F. Wang, Z. Qi, 2010, Transplantation proceedings.

Integration in oncogenes plays only a minor role in determining the in vivo distribution of HIV integration sites before or during suppressive antiretroviral therapy

S. Hughes, J. Mellors, B. Luke, 2021, PLoS pathogens.

Integration in or Near Oncogenes Plays Only a Minor Role in Determining the in Vivo Distribution of HIV Integration Sites Before or During Suppressive Antiretroviral Therapy

S. Hughes, J. Mellors, B. Luke, 2020, bioRxiv.

CpG Methylation Profiles of HIV-1 Proviral DNA in Individuals on ART

J. Coffin, B. Keele, S. Deeks, 2021, Viruses.

Retrovirus Integration Database (RID): a public database for retroviral insertion sites into host genomes

John W. Mellors, John M. Coffin, Wei Shao, 2016, Retrovirology.

Proviruses with identical sequences comprise a large fraction of the replication-competent HIV reservoir

S. Hughes, J. Mellors, B. Luke, 2017, PLoS pathogens.

Broad activation of latent HIV-1 in vivo

K. Byth, R. Lanfear, S. Lewin, 2016, Nature Communications.

Clonally expanded CD4+ T cells can produce infectious HIV-1 in vivo

S. Hughes, J. Kovacs, M. Polis, 2016, Proceedings of the National Academy of Sciences.

Specific HIV integration sites are linked to clonal expansion and persistence of infected cells

S. Hughes, J. Mellors, J. Coffin, 2014, Science.

HIV Rebound Is Predominantly Fueled by Genetically Identical Viral Expansions from Diverse Reservoirs.

P. Lemey, F. Vermassen, D. Hemelsoet, 2019, Cell host & microbe.

HIV Infected T Cells Can Proliferate in vivo Without Inducing Expression of the Integrated Provirus

S. Hughes, E. Boritz, J. Mellors, 2019, Front. Microbiol..

Comparison of standard PCR/cloning to single genome sequencing for analysis of HIV-1 populations.

J. Coffin, C. Chappey, F. Maldarelli, 2010, Journal of virological methods.

Majority of CD4+ T cells from peripheral blood of HIV-1–infected individuals contain only one HIV DNA molecule

Wei Shao, Jan Albert, Jianbo Chen, 2011, Proceedings of the National Academy of Sciences.

Ultrasensitive Allele-Specific PCR Reveals Rare Preexisting Drug-Resistant Variants and a Large Replicating Virus Population in Macaques Infected with a Simian Immunodeficiency Virus Containing Human Immunodeficiency Virus Reverse Transcriptase

J. Mellors, J. Coffin, V. KewalRamani, 2012, Journal of Virology.

Well-mixed plasma and tissue viral populations in RT-SHIV-infected macaques implies a lack of viral replication in the tissues during antiretroviral therapy

J. Mellors, J. Coffin, Z. Ambrose, 2015, Retrovirology.

Lack of Detectable HIV-1 Molecular Evolution during Suppressive Antiretroviral Therapy

J. Mellors, J. Coffin, Nicholas A. Kovacs, 2014, PLoS pathogens.

Genetic Diversity of Simian Immunodeficiency Virus Encoding HIV-1 Reverse Transcriptase Persists in Macaques despite Antiretroviral Therapy

J. Lifson, J. Mellors, J. Coffin, 2010, Journal of Virology.

The Major Histocompatibility Complex (MHC) of the Secondary Transplant Tissue Donor Influences the Cross‐Reactivity of Alloreactive Memory Cells

H. Thorlacius, H. Dai, W. Shao, 2011, Scandinavian journal of immunology.

2020 SARS-CoV-2 diversification in the United States: Establishing a pre-vaccination baseline

J. Coffin, W. Shao, M. Kearney, 2021, medRxiv.

RT-SHIV subpopulation dynamics in infected macaques during anti-HIV therapy

Wei Shao, R. Stephens, J. Lifson, 2009, Retrovirology.

Intact HIV Proviruses Persist in Children Seven to Nine Years after Initiation of Antiretroviral Therapy in the First Year of Life

Wei-Shau Hu, J. Mellors, Imogen A. Wright, 2019, Journal of Virology.

Origin of Rebound Plasma HIV Includes Cells with Identical Proviruses That Are Transcriptionally Active before Stopping of Antiretroviral Therapy

M. Lederman, J. Mellors, J. Coffin, 2015, Journal of Virology.

Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA

J. Mellors, J. Coffin, F. Maldarelli, 2016, Retrovirology.

HIV-1 in lymph nodes is maintained by cellular proliferation during antiretroviral therapy.

S. Hughes, J. Mellors, J. Coffin, 2019, The Journal of clinical investigation.

HIV-1 in Lymph Nodes is Maintained by Cellular Proliferation During Antiretroviral 1 Therapy 2 3

Patro, S. Hughes, J. Mellors, 2019 .

Linked dual-class HIV resistance mutations are associated with treatment failure.

M. Hughes, R. Schooley, J. Mellors, 2019, JCI insight.

Suppression of Viremia and Evolution of Human Immunodeficiency Virus Type 1 Drug Resistance in a Macaque Model for Antiretroviral Therapy

J. Lifson, J. Mellors, J. Coffin, 2007, Journal of Virology.

Lower pre-ART intra-participant HIV-1 pol diversity may not be associated with virologic failure in adults

M. Hughes, R. Haubrich, J. Mellors, 2018, PloS one.

APOBEC3 proteins can copackage and comutate HIV-1 genomes

Ryan C. Burdick, V. Pathak, Wei-Shau Hu, 2016, Nucleic acids research.

HIV-1 Viremia Not Suppressible By Antiretroviral Therapy Can Originate from Large T-Cell Clones Producing Infectious Virus

S. Hughes, J. Mellors, J. Coffin, 2020, bioRxiv.

Memory CD4 + T-Cells Expressing HLA-DR Contribute to HIV Persistence During Prolonged Antiretroviral Therapy

E. Boritz, F. Hecht, D. Douek, 2019, Front. Microbiol..

No evidence of HIV replication in children on antiretroviral therapy.

J. Mellors, B. Luke, J. Coffin, 2017, The Journal of clinical investigation.

HIV Proviral Sequence Database (PSD): A New Public Database for Near Full-Length HIV Proviral Sequences and Their Meta-Analyses.

Wei-Shau Hu, J. Mellors, J. Coffin, 2020, AIDS research and human retroviruses.

HIVIntact: a python-based tool for HIV-1 genome intactness inference

Wei-Shau Hu, J. Coffin, Imogen A. Wright, 2021, Retrovirology.

Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.

P. Lemey, E. Boritz, H. Hatano, 2015, The Journal of infectious diseases.

Intact HIV Proviruses Persist in Children 7-9 Years after Initiation of ART in the First Year of Life

Wei-Shau Hu, J. Mellors, Imogen A. Wright, 2019, SSRN Electronic Journal.

Ongoing HIV Replication During ART Reconsidered

J. Mellors, B. Luke, J. Coffin, 2017, Open forum infectious diseases.

OP 1.3 – 00017 The fraction of cells with unspliced HIV RNA is not associated with plasma viremia

J. Mellors, J. Coffin, W. Shao, 2022, Journal of virus eradication.

Impact of Antiretroviral Therapy Duration on HIV-1 Infection of T Cells within Anatomic Sites

E. Boritz, H. Hatano, F. Hecht, 2019, Journal of Virology.

CD44/CD70 Blockade and Anti‐CD154/LFA‐1 Treatment Synergistically Suppress Accelerated Rejection and Prolong Cardiac Allograft Survival in Mice

Y. Lin, H. Thorlacius, H. Dai, 2011, Scandinavian Journal of Immunology.

Anti-CD44 Monoclonal Antibody Inhibits Heart Transplant Rejection Mediated by Alloantigen-primed CD4+ Memory T Cells in Nude Mice

H. Thorlacius, W. Shao, Z. Qi, 2010, Immunological investigations.

Blockade of CD27/CD70 pathway to reduce the generation of memory T cells and markedly prolong the survival of heart allografts in presensitized mice.

Xiaomin Wang, H. Ekberg, H. Dai, 2011, Transplant immunology.

Mutations in HIV-1 Reverse Transcriptase Affect the Errors Made in a Single Cycle of Viral Replication

Octavio A. Quiñones, S. Tuske, S. Hughes, 2014, Journal of Virology.

Viral Replication Affect the Errors Made in a Single Cycle of Mutations in HIV-1 Reverse Transcriptase

S. Tuske, S. Hughes, E. Arnold, 2014 .

Application of Ambiguous Analysis for Determining Recent Infections of HIV-1 in a China Men Who Had Sex with Men Population

Hao Wu, W. Shao, Z. Zeng, 2014 .

Single Genome Sequencing of HIV-1 Gag and Protease Resistance Mutations at Virologic Failure during the Ok04 Trial of Simplified versus Standard Maintenance Therapy

J. Mellors, J. Arribas, R. Delgado, 2011, Antiviral therapy.

The nature of resistance to human immunodeficiency virus type-1 protease inhibitors

R. Swanstrom, W. Shao, T. Smith, 2000 .

HIV Populations Shift After Tuberculosis Associated Immune Reconstitution Inflammatory Syndrome: Implications For HIV Remission

J. Adelsberger, R. Gorelick, K. Huik, 2020 .

[The expression of Cyclin A and p21cip1 in fibroblast of hypertrophic scar].

W. Shao, A. Zou, Hong-mei Tang, 2010, Zhonghua zheng xing wai ke za zhi = Zhonghua zhengxing waike zazhi = Chinese journal of plastic surgery.

Frequent polymorphism at drug resistance sites in HIV-1 protease and reverse transcriptase

Wei Shao, Sarah Palmer, J. Margolick, 2008, AIDS.

Hematopoietic precursor cells isolated from patients on long-term suppressive HIV therapy did not contain HIV-1 DNA.

F. Hecht, P. Bacchetti, E. Sinclair, 2012, The Journal of infectious diseases.

An example of genetically distinct HIV type 1 variants in cerebrospinal fluid and plasma during suppressive therapy.

R. Price, L. Hagberg, M. Gisslén, 2014, The Journal of infectious diseases.

Xenoreactive CD4+ memory T cells resist inhibition by anti‐CD44 mAb and reject islet grafts via a Th2‐dependent pathway

H. Dai, W. Shao, Z. Qi, 2011, Xenotransplantation.

Ex vivo activation of CD4+ T-cells from donors on suppressive ART can lead to sustained production of infectious HIV-1 from a subset of infected cells

J. Mellors, B. Luke, W. Shao, 2017, PLoS pathogens.

Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA

R. Stephens, J. Mellors, N. Volfovsky, 2013, Retrovirology.

Romidepsin-induced HIV-1 viremia during effective antiretroviral therapy contains identical viral sequences with few deleterious mutations

T. Schlub, M. Tolstrup, W. Shao, 2017, AIDS.

An analytical pipeline for identifying and mapping the integration sites of HIV and other retroviruses

S. Hughes, J. Coffin, Xiaolin Wu, 2020, BMC Genomics.

Correction to: An analytical pipeline for identifying and mapping the integration sites of HIV and other retroviruses

S. Hughes, J. Coffin, Xiaolin Wu, 2020, BMC Genomics.

Retrovirus Integration Database (RID): a public database for retroviral insertion sites into host genomes

S. Hughes, J. Mellors, B. Luke, 2016, Retrovirology.

Genetic characterization of the HIV-1 reservoir after Vacc-4x and romidepsin therapy in HIV-1-infected individuals

T. Schlub, M. Tolstrup, W. Shao, 2018, AIDS.

Proceedings of the Frontiers of Retrovirology Conference 2016

Sebastian A. Wagner, R. König, D. Elleder, 2016, Retrovirology.

A Population-Structured HIV Epidemic in Israel: Roles of Risk and Ethnicity

Z. Grossman, Z. Mor, F. Maldarelli, 2015, PloS one.

Early Presence of HIV-1 Subtype C in Washington, D.C.

R. Dewar, Z. Grossman, F. Maldarelli, 2018, AIDS research and human retroviruses.

Combination of monoclonal antibodies with DST inhibits accelerated rejection mediated by memory T cells to induce long-lived heart allograft acceptance in mice.

H. Thorlacius, H. Dai, W. Shao, 2011, Immunology letters.

The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites

E. Boritz, H. Hatano, F. Hecht, 2019 .

RT-SHIV subpopulation dynamics in infected macaques during anti-HIV therapy

R. Stephens, J. Lifson, J. Mellors, 2009, Retrovirology.

No evidence of HIV replication in children on antiretroviral therapy.

J. Mellors, B. Luke, J. Coffin, 2017, The Journal of clinical investigation.

Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.

P. Lemey, E. Boritz, H. Hatano, 2015, The Journal of infectious diseases.

HIV-1 Continues To Replicate and Evolve in Patients with Natural Control of HIV Infection

J. Mellors, J. Coffin, F. Maldarelli, 2010, Journal of Virology.