A. Nauta

发表

O. Kuipers, S. V. van Hijum, J. Kok, 2005, Journal of Biological Chemistry.

Comparative genomics and functional analysis of the 936 group of lactococcal Siphoviridae phages

Aldert L. Zomer, H. Neve, D. van Sinderen, 2016, Scientific Reports.

The human milk oligosaccharides 3-FL, LNnT, and LDFT attenuate TNF-α induced inflammation in fetal intestinal epithelial cells through shedding or interacting with TNF receptor 1

P. Vos, Lianghui Cheng, M. Groves, 2020 .

Modulation of Intestinal Epithelial Glycocalyx Development by Human Milk Oligosaccharides and Non‐Digestible Carbohydrates

P. de Vos, Chunli Kong, Lianghui Cheng, 2019, Molecular nutrition & food research.

Probing Direct Interactions between CodY and the oppD Promoter of Lactococcus lactis

O. Kuipers, J. Kok, D. van Sinderen, 2005, Journal of bacteriology.

In Silico Prediction of Horizontal Gene Transfer Events in Lactobacillus bulgaricus and Streptococcus thermophilus Reveals Protocooperation in Yogurt Manufacturing

R. Siezen, A. Nauta, Mengjin Liu, 2009, Applied and Environmental Microbiology.

The proteolytic system of lactic acid bacteria revisited: a genomic comparison

R. Siezen, Bernadet Renckens, J. Bayjanov, 2010, BMC Genomics.

Correlating Infant Fecal Microbiota Composition and Human Milk Oligosaccharide Consumption by Microbiota of 1‐Month‐Old Breastfed Infants

H. Smidt, I. Arts, E. Saccenti, 2019, Molecular nutrition & food research.

Human milk oligosaccharides and its acid hydrolysate LNT2 show immunomodulatory effects via TLRs in a dose and structure-dependent way

Lianghui Cheng, A. Nauta, A. Groeneveld, 2019, Journal of Functional Foods.

Characterization of the Putative Replisome Organizer of the Lactococcal Bacteriophage r1t

G. Venemâ, J. Kok, B. Franke-Fayard, 2002, Journal of Virology.

The effect of prebiotic fortified infant formulas on microbiota composition and dynamics in early life

H. Smidt, I. Arts, M. Suárez-Diez, 2019, Scientific Reports.

Computational Analysis of Cysteine and Methionine Metabolism and Its Regulation in Dairy Starter and Related Bacteria

C. Francke, R. Siezen, A. Nauta, 2012, Journal of bacteriology.

Prebiotic Galacto-Oligosaccharides Impact Stool Frequency and Fecal Microbiota in Self-Reported Constipated Adults: A Randomized Clinical Trial

A. Hartog, J. Boekhorst, A. Nauta, 2022, Nutrients.

Characterization of the lytic-lysogenic switch of the lactococcal bacteriophage Tuc2009.

J. Alonso, G. Venemâ, J. Kok, 2006, Virology.

Comparative Genomics of Enzymes in Flavor-Forming Pathways from Amino Acids in Lactic Acid Bacteria

C. Francke, R. Siezen, A. Nauta, 2008, Applied and Environmental Microbiology.

Impact of thermal and biocidal treatments on lactococcal 936-type phages

D. Sinderen, J. Mahony, A. Nauta, 2014 .

Autolysis of Lactococcus lactis caused by induced overproduction of its major autolysin, AcmA

Harma A. Karsens, D. Sinderen, G. Venema, 1997, Applied and environmental microbiology.

Effects of Different Human Milk Oligosaccharides on Growth of Bifidobacteria in Monoculture and Co-culture With Faecalibacterium prausnitzii

P. de Vos, H. Harmsen, Lianghui Cheng, 2020, Frontiers in Microbiology.

Flux analysis of the human proximal colon using anaerobic digestion model 1.

R. Kleerebezem, A. Nauta, E. V. D. van den Heuvel, 2014, Anaerobe.

A Systematic Review of Psychobiotic Interventions in Children and Adolescents to Enhance Cognitive Functioning and Emotional Behavior

N. Johnstone, Kathrin Cohen Kadosh, A. Nauta, 2022, Nutrients.

Biocidal Inactivation of Lactococcus lactis Bacteriophages: Efficacy and Targets of Commonly Used Sanitizers

H. Neve, C. Franz, M. Ventura, 2017, Front. Microbiol..

Selective carbohydrate utilization by lactobacilli and bifidobacteria

D. Sinderen, M. O'Connell Motherway, A. Nauta, 2013, Journal of applied microbiology.

Identification and Characterization of Two Novel Clostridial Bacteriocins, Circularin A and Closticin 574

Jan Kok, O. Kuipers, J. Kok, 2003, Applied and Environmental Microbiology.

Anxiolytic effects of a galacto-oligosaccharides prebiotic in healthy females (18–25 years) with corresponding changes in gut bacterial composition

Paul T. Sowden, N. Johnstone, B. van den Bogert, 2021, Scientific Reports.

Anxiolytic effects of a galacto-oligosaccharides prebiotic in healthy female volunteers are associated with reduced negative bias and the gut bacterial composition

Paul T. Sowden, K. C. Kadosh, N. Johnstone, 2019 .

Homeostasis of the gut barrier and potential biomarkers

W. D. de Vos, V. Théodorou, J. Dekker, 2016, American journal of physiology. Gastrointestinal and liver physiology.

Short chain fatty acids in human gut and metabolic health.

K. Verbeke, G. Frost, G. Mithieux, 2020, Beneficial microbes.

Biodiversity of lactococcal bacteriophages isolated from 3 Gouda-type cheese-producing plants.

H. Neve, D. van Sinderen, K. Heller, 2013, Journal of dairy science.

Gut microbiome stability and resilience: elucidating the response to perturbations in order to modulate gut health

E. Zoetendal, H. Smidt, J. Penders, 2020, Gut.

Human milk oligosaccharides, antimicrobial drugs, and the gut microbiota of term neonates: observations from the KOALA birth cohort study

David J. M. Barnett, H. Smidt, I. Arts, 2023, Gut microbes.

Revealing new leads for the impact of galacto-oligosaccharides on gut commensals and gut health benefits through text mining.

W. Alkema, R. Schoemaker, A. Sijbers, 2020, Beneficial microbes.

Towards microbial fermentation metabolites as markers for health benefits of prebiotics

J. Raes, M. Kleerebezem, A. Boobis, 2015, Nutrition Research Reviews.

Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches

Douwe van Sinderen, Jennifer Mahony, D. van Sinderen, 2017, Viruses.

Bacteriophage Orphan DNA Methyltransferases: Insights from Their Bacterial Origin, Function, and Occurrence

D. van Sinderen, J. Mahony, A. Nauta, 2013, Applied and Environmental Microbiology.

Systematic review of the effects of the intestinal microbiota on selected nutrients and non-nutrients

I. Rowland, A. Meynier, J. Swann, 2017, European Journal of Nutrition.

Infant Fecal Fermentations with Galacto-Oligosaccharides and 2′-Fucosyllactose Show Differential Bifidobacterium longum Stimulation at Subspecies Level

Tim J. van den Broek, M. Marzorati, I. Bovee-Oudenhoven, 2023, Children.

Methyltransferases acquired by lactococcal 936-type phage provide protection against restriction endonuclease activity

J. Klumpp, D. van Sinderen, J. Mahony, 2014, BMC Genomics.

University of Groningen Sequence analysis and molecular characterization of the temperate lactococcal bacteriophage r 1

D. Sinderen, G. Venemâ, J. Kok, 2017 .

Molecular characterization and exploitation of the temperate Lactococcus lactis bacteriophage r1t

A. Nauta, 1997 .

Sequence analysis and molecular characterization of the temperate lactococcal bacteriophage r1t

Harma A. Karsens, P. Terpstra, D. Sinderen, 1996, Molecular microbiology.

Functional carbohydrate binding modules identified in evolved dits from siphophages infecting various Gram‐positive bacteria

R. Vincentelli, C. Cambillau, M. Ventura, 2018, Molecular microbiology.

Inducible gene expression mediated by a repressor‐operator system isolated from Lactococcus lactis bacteriophage r1t

Harma A. Karsens, G. Venemâ, J. Kok, 1996, Molecular microbiology.

Functional Analysis of the Gene Cluster Involved in Production of the Bacteriocin Circularin A by Clostridium beijerinckii ATCC 25752

O. Kuipers, J. Kok, A. Nauta, 2003, Applied and Environmental Microbiology.

Title: Bacteriophage orphan DNA methyltransferases: Insights from their bacterial 1 origins, function and occurrence. 2 3

J. Mahony, A. Nauta, James Murphy, 2013 .

Bacterial Origin , Function , and Occurrence Methyltransferases : Insights from Their Bacteriophage Orphan DNA

J. Mahony, A. Nauta, James Murphy, 2013 .

Ubiquitous Carbohydrate Binding Modules Decorate 936 Lactococcal Siphophage Virions

R. Vincentelli, C. Cambillau, D. van Sinderen, 2019, Viruses.

A computational analysis of cysteine and methionine metabolism and its regulation 1 in dairy starter and related bacteria 2 3

C. Francke, R. Siezen, A. Nauta, 2012 .

In vitro fermentation of galacto-oligosaccharides and its specific size-fractions using non-treated and amoxicillin-treated human inoculum

F. Schuren, H. Gruppen, H. Schols, 2014 .

High-throughput analysis of the impact of antibiotics on the human intestinal microbiota composition.

F. Schuren, H. Gruppen, R. Montijn, 2013, Journal of microbiological methods.

Impact of galacto-oligosaccharides on the gut microbiota composition and metabolic activity upon antibiotic treatment during in vitro fermentation.

F. Schuren, H. Gruppen, H. Schols, 2014, FEMS microbiology ecology.

Nutrient Intake and Gut Microbial Genera Changes after a 4-Week Placebo Controlled Galacto-Oligosaccharides Intervention in Young Females

N. Johnstone, Kathrin Cohen Kadosh, K. Hart, 2021, Nutrients.

Exploring the effects of galacto-oligosaccharides on the gut microbiota of healthy adults receiving amoxicillin treatment

F. Schuren, H. Gruppen, M. Mars, 2014, British Journal of Nutrition.

Identification of Dual Receptor Binding Protein Systems in Lactococcal 936 Group Phages

H. Neve, C. Franz, C. Cambillau, 2018, Viruses.

Combining Chemoinformatics with Bioinformatics: In Silico Prediction of Bacterial Flavor-Forming Pathways by a Chemical Systems Biology Approach “Reverse Pathway Engineering”

Johann Gasteiger, Oliver Sacher, Roland J. Siezen, 2014, PloS one.

Design of thermolabile bacteriophage repressor mutants by comparative molecular modeling

Harma A. Karsens, B. Burg, G. Venemâ, 1997, Nature Biotechnology.

Microbiota-dependent influence of prebiotics on the resilience of infant gut microbiota to amoxicillin/clavulanate perturbation in an in vitro colon model

David J. M. Barnett, H. Smidt, I. Arts, 2023, Frontiers in Microbiology.

2′-fucosyllactose alone or combined with resistant starch increases circulating short-chain fatty acids in lean men and men with prediabetes and obesity

E. Zoetendal, J. Holst, K. Venema, 2023, Frontiers in nutrition.

High-throughput analysis of the impact of antibiotics on the human intestinal microbiota composition.

F. Schuren, H. Gruppen, B. Keijser, 2013, Journal of microbiological methods.

Selective carbohydrate utilization by lactobacilli and bifidobacteria

D. Sinderen, M. O'Connell Motherway, A. Nauta, 2013, Journal of applied microbiology.

University of Groningen Identification and characterization of two novel clostridial bacteriocins , circularin A and closticin

Harma A. Karsens, O. Kuipers, J. Kok, 2017 .

In Silico Prediction of Horizontal Gene Transfer Events in Lactobacillus bulgaricus and Streptococcus thermophilus Reveals Protocooperation in Yogurt Manufacturing

R. Siezen, A. Nauta, Mengjin Liu, 2009, Applied and Environmental Microbiology.

Bacteriophage-host interactions as a platform to establish the role of phages in modulating the microbial composition of fermented foods

D. van Sinderen, J. Mahony, A. Nauta, 2022, Microbiome research reports.

Inducible gene expression mediated by a repressor‐operator system isolated from Lactococcus lactis bacteriophage r1t

Harma A. Karsens, G. Venemâ, J. Kok, 1996, Molecular microbiology.

The individual response to antibiotics and diet - insights into gut microbial resilience and host metabolism.

E. Blaak, A. Nauta, Lars M. M. Vliex, 2024, Nature reviews. Endocrinology.

Linking human milk oligosaccharide metabolism and early life gut microbiota: bifidobacteria and beyond

D. van Sinderen, A. Nauta, A. Groeneveld, 2024, Microbiology and molecular biology reviews : MMBR.