Rui Fa

发表

SMART: Unique Splitting-While-Merging Framework for Gene Clustering

A. Nandi, Rui Fa, D. Roberts, 2014, PloS one.

Paradigm of Tunable Clustering Using Binarization of Consensus Partition Matrices (Bi-CoPaM) for Gene Discovery

A. Nandi, Rui Fa, D. Roberts, 2013, PloS one.

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Jari Björne, Tapio Salakoski, Giorgio Valentini, 2019, Genome Biology.

High‐throughput Technologies

A. Nandi, Rui Fa, B. Abu-Jamous, 2015 .

Application of the Bi-CoPaM Method to Five Escherichia Coli Datasets Generated under Various Biological Conditions

A. Nandi, Rui Fa, D. Roberts, 2014, Journal of Signal Processing Systems.

Dairy Farm Management Systems: Sheep

Rui Fa, M. Sitzia, 2015 .

Neural Network‐based Clustering

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015 .

Network community degree based fast community detection algorithm for fMRI data

Chao Liu, Maozhen Li, Asoke K. Nandi, 2016, 2016 12th International Conference on Natural Computation, Fuzzy Systems and Knowledge Discovery (ICNC-FSKD).

Distinct gene expression program dynamics during erythropoiesis from human induced pluripotent stem cells compared with adult and cord blood progenitors

A. Nandi, K. Robson, L. Carpenter, 2016, BMC Genomics.

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Tapio Salakoski, Feng Zhang, Paolo Fontana, 2019, Genome Biology.

Comprehensive analysis of forty yeast microarray datasets reveals a novel subset of genes (APha-RiB) consistently negatively associated with ribosome biogenesis

Asoke K. Nandi, Rui Fa, Basel Abu-Jamous, 2014, BMC Bioinformatics.

Using deep maxout neural networks to improve the accuracy of function prediction from protein interaction networks

David T. Jones, Domenico Cozzetto, Cen Wan, 2018, bioRxiv.

UNCLES: method for the identification of genes differentially consistently co-expressed in a specific subset of datasets

Asoke K. Nandi, Rui Fa, Basel Abu-Jamous, 2015, BMC Bioinformatics.

Yeast gene CMR1/YDL156W is consistently co-expressed with genes participating in DNA-metabolic processes in a variety of stringent clustering experiments

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2013, Journal of The Royal Society Interface.

Noise Resistant Generalized Parametric Validity Index of Clustering for Gene Expression Data

Asoke K. Nandi, Rui Fa, A. Nandi, 2014, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Predicting human protein function with multi-task deep neural networks

Rui Fa, David T Jones, Domenico Cozzetto, 2018, bioRxiv.

Application of the Bi-CoPaM Method to Five Escherichia Coli Datasets Generated under Various Biological Conditions

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015, J. Signal Process. Syst..

Integrative Cluster Analysis in Bioinformatics: Nandi/Integrative Cluster Analysis in Bioinformatics

Asoke K. Nandi, Rui Fa, Basel Abu-jamous, 2015 .

Linking Brain Responses to Naturalistic Music Through Analysis of Ongoing EEG and Stimulus Features

Tapani Ristaniemi, Fengyu Cong, Vinoo Alluri, 2013, IEEE Transactions on Multimedia.

Splitting-while-merging framework for clustering high-dimension data with component-wise expectation conditional maximisation

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2014, 2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Dual-layer network representation exploiting information characterization

Asoke K. Nandi, Rui Fa, Marco Carli, 2014, 2014 22nd European Signal Processing Conference (EUSIPCO).

CoCE-SMART: Consensus clustering based on enhanced splitting-merging awareness tactics

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015, 2015 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Mixture Model Clustering

A. Nandi, Rui Fa, B. Abu-Jamous, 2015 .

Identification of genes consistently co-expressed in multiple microarray datasets by a genome-wide Bi-CoPaM approach

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2013, 2013 IEEE International Conference on Acoustics, Speech and Signal Processing.

Bi-CoPaM ensemble clustering application to five Escherichia coli bacterial datasets

Asoke K. Nandi, Rui Fa, Basel Abu-Jamous, 2014, 2014 22nd European Signal Processing Conference (EUSIPCO).

Computational Methods in Bioinformatics

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015 .

Clustering analysis for gene expression data: A methodological review

Asoke K. Nandi, Rui Fa, Liyun Gong, 2012, 2012 5th International Symposium on Communications, Control and Signal Processing.

Parametric validity index of clustering for microarray gene expression data

A. Nandi, Rui Fa, 2011, 2011 IEEE International Workshop on Machine Learning for Signal Processing.

Databases, Standards and Annotation

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015 .