Guy Naamati

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Ensembl Genomes 2020—enabling non-vertebrate genomic research

James E. Allen, Andrew D. Yates, Mark D. McDowall, 2019, Nucleic Acids Res..

A Balance Between Regulatory Constraints And Pathogen Pressure Shapes The Evolution Of Innate Immunity

S. Teichmann, Valentina Proserpio, R. Miragaia, 2017 .

Gene expression variability across cells and species shapes innate immunity

S. Teichmann, Valentina Proserpio, R. Miragaia, 2017, bioRxiv.

Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR

Matthias Lange, P. Kersey, T. Cezard, 2022, F1000Research.

Expansion of tandem repeats in sea anemone Nematostella vectensis proteome: A source for gene novelty?

M. Linial, M. Fromer, Guy Naamati, 2009, BMC Genomics.

University of Birmingham A roadmap for gene functional characterisation in crops with large genomes

R. Ramírez-González, C. Sansaloni, B. Contreras-Moreira, 2020 .

Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR.

Matthias Lange, P. Kersey, T. Cezard, 2022, F1000Research.

Gene expression variability across cells and species shapes innate immunity

S. Teichmann, M. Lässig, M. Haniffa, 2017, bioRxiv.

Susceptibility of the human pathways graphs to fragmentation by small sets of microRNAs

Michal Linial, Guy Naamati, Yitzhak Friedman, 2012, Bioinform..

K-mer counting and curated libraries drive efficient annotation of repeats in plant genomes

James E. Allen, P. Flicek, B. Contreras-Moreira, 2021, The plant genome.

Efficient masking of plant genomes by combining kmer counting and curated repeats

James E. Allen, Paul Flicek, Guy Naamati, 2021, bioRxiv.

Gene expression variability across cells and species shapes innate immunity

Michael Lässig, Ricardo J Miragaia, Sarah A Teichmann, 2018, Nature.

A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes

Michal Linial, Manor Askenazi, Guy Naamati, 2010, Bioinform..

MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets

Michal Linial, Guy Naamati, Yitzhak Friedman, 2010, Bioinform..

Ensembl Genomes 2022: an expanding genome resource for non-vertebrates

James E. Allen, Andrew D. Yates, Mikkel B. Christensen, 2021, Nucleic Acids Res..

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

Robert D. Finn, Zicheng Liu, Alessandro Vullo, 2017, Nucleic Acids Res..

A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat

Keywan Hassani-Pak, Guy Naamati, Bruno Contreras-Moreira, 2020, eLife.

A roadmap for gene functional characterisation in wheat

R. Ramírez-González, C. Sansaloni, B. Contreras-Moreira, 2019 .

Gramene 2018: unifying comparative genomics and pathway resources for plant research

Bo Wang, Lincoln Stein, Nuno A. Fonseca, 2017, Nucleic Acids Res..

ClanTox: a classifier of short animal toxins

Michal Linial, Manor Askenazi, Guy Naamati, 2009, Nucleic Acids Res..

Genetic Diversity, Population Structure and Linkage Disequilibrium Assessment among International Sunflower Breeding Collections

G. Merino, N. Paniego, D. Álvarez, 2020, Genes.

Building pangene sets from plant genome alignments confirms presence-absence variation

P. Flicek, S. Dyer, B. Contreras-Moreira, 2023, bioRxiv.

Scripting Analyses of Genomes in Ensembl Plants

James E. Allen, P. Flicek, Matthieu Muffato, 2022, Methods in molecular biology.

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research

Irene Papatheodorou, Lincoln D Stein, Weijia Xu, 2020, Nucleic Acids Res..

Calling pangenes from plant genome alignments confirms presence-absence variation

P. Flicek, S. Dyer, B. Contreras-Moreira, 2023, bioRxiv.

Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR

Matthias Lange, P. Kersey, T. Cezard, 2022, F1000Research.

Gene expression variability across cells and species shapes innate immunity

Ricardo J. Miragaia, S. Teichmann, M. Lässig, 2017, Nature.

A balance between regulatory constraints and pathogen pressure shapes the evolution of innate immunity

Ricardo J. Miragaia, S. Teichmann, R. Miragaia, 2017 .

Ensembl 2024

Jonathan M. Mudge, Andrew D. Yates, Peter W. Harrison, 2023, Nucleic acids research.

Rothamsted Repository Download

James E. Allen, Mark D. McDowall, Carla A. Cummins, 2022 .

GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation

Guy Naamati, Paul Flicek, Shradha Saraf, 2023, Genome Biology.

MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets

M. Linial, Guy Naamati, Yitzhak Friedman, 2010, Bioinform..