B. Barz

发表

A kinetic approach to the sequence-aggregation relationship in disease-related protein assembly.

D. Wales, B. Strodel, B. Barz, 2014, The journal of physical chemistry. B.

Large-scale, dynamin-like motions of the human guanylate binding protein 1 revealed by multi-resolution simulations

B. Strodel, B. Barz, Jennifer Loschwitz, 2019, PLoS computational biology.

Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality.

Ioan Kosztin, Bogdan Barz, I. Kosztin, 2006, The Journal of chemical physics.

Kinetic Monte Carlo and cellular particle dynamics simulations of multicellular systems.

Adrian Neagu, Gabor Forgacs, Ioan Kosztin, 2011, Physical review. E, Statistical, nonlinear, and soft matter physics.

Conformational Transitions of the Amyloid‐β Peptide Upon Copper(II) Binding and pH Changes

B. Strodel, B. Barz, Qinghua Liao, 2017 .

Interaction of Therapeutic d-Peptides with Aβ42 Monomers, Thermodynamics, and Binding Analysis.

Alexander K. Buell, D. Willbold, A. Buell, 2022, ACS chemical neuroscience.

Aβ under stress: the effects of acidosis, Cu2+-binding, and oxidation on amyloid β-peptide dimers.

B. Strodel, B. Barz, Qinghua Liao, 2018, Chemical communications.

Dimer Formation Enhances Structural Differences between Amyloid β-Protein (1–40) and (1–42): An Explicit-Solvent Molecular Dynamics Study

B. Urbanc, B. Barz, 2012, PloS one.

Bioactivation of Quinolines in a Recombinant Estrogen Receptor Transactivation Assay Is Catalyzed by N-Methyltransferases.

M. Hecker, A. Tiehm, H. Hollert, 2019, Chemical research in toxicology.

Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality.

I. Kosztin, B. Barz, L. Janosi, 2005, The Journal of chemical physics.

Understanding Amyloid-β Oligomerization at the Molecular Level: The Role of the Fibril Surface.

B. Strodel, B. Barz, 2016, Chemistry.

Pathways of Amyloid-β Aggregation Depend on Oligomer Shape.

B. Strodel, B. Barz, Qinghua Liao, 2018, Journal of the American Chemical Society.

Thermodynamics and kinetics of amyloid aggregation from atomistic simulations

B. Strodel, B. Barz, 2015 .

Local, global and electronic structure of supported gold nanoclusters determined by EXAFS, XRD and XPS methods

N. Aldea, F. Matei, B. E. Nieuwenhuys, 2009 .

Computational modeling of epithelial-mesenchymal transformations

Roger R. Markwald, Vladimir Mironov, Adrian Neagu, 2010, Biosyst..

Aβ42 pentamers/hexamers are the smallest detectable oligomers in solution

M. Wolff, B. Strodel, A. Radulescu, 2017, Scientific Reports.

Monomeric amyloid β-peptide (1-42) significantly populates compact fibril-like conformations

Alexander K. Buell, A. Buell, B. Barz, 2020, bioRxiv.

Minimal Model of Self-Assembly: Emergence of Diversity and Complexity

B. Urbanc, B. Barz, 2014, The journal of physical chemistry. B.

Folding of pig gastric mucin non-glycosylated domains: a discrete molecular dynamics study

Bradley S. Turner, B. Urbanc, B. Barz, 2012, Journal of Biological Physics.

Folding of Pig Gastric Mucin Non-glycosylated Domains : A Combined Discrete Molecular Dynamics and Circular Dichroism Study

B. Urbanc, N. Afdhal, B. Barz, 2011 .

Kinetics of Te precipitation in mercury cadmium telluride

M. Neubert, B. Barz, K. Jacobs, 1993 .

Hg vacancy diffusion in mercury cadmium telluride

M. Neubert, B. Barz, K. Jacobs, 1993 .

Theoretical and in silico modeling of biological systems: From protein structure prediction to cellular dynamics

Bogdan Barz, B. Barz, 2009 .

Structural and Magnetic Properties of Polypyrrole Nanocomposites

R. Turcu, N. Aldea, B. Barz, 2004 .

Fully Atomistic Aβ40 and Aβ42 Oligomers in Water: Observation of Porelike Conformations.

B. Urbanc, B. Barz, M. J. Voelker, 2017, Journal of chemical theory and computation.

Early amyloid β-protein aggregation precedes conformational change.

B. Strodel, B. Barz, O. Olubiyi, 2014, Chemical communications.

Large-scale, dynamin-like motions of the human guanylate binding protein 1 revealed by multi-resolution simulations

Birgit Strodel, Bogdan Barz, Jennifer Loschwitz, 2019, bioRxiv.

Membrane curvature and surface area per lipid affect the conformation and oligomeric state of HIV-1 fusion peptide: a combined FTIR and MD simulation study.

I. Kosztin, B. Barz, T. C. Wong, 2008, Biochimica et biophysica acta.

Pyroglutamate-modified amyloid β(3-42) monomer has more β-sheet content than the amyloid β(1-42) monomer.

Alexander K. Buell, A. Buell, B. Barz, 2023, Physical chemistry chemical physics : PCCP.

Computational Modeling of Tissue Self-Assembly

Adrian Neagu, Karoly Jakab, Gabor Forgacs, 2006 .

Compact fibril-like structure of amyloid β-peptide (1-42) monomers.

Alexander K. Buell, A. Buell, B. Barz, 2020, Chemical communications.

Molecular dynamics simulations of protein aggregation: protocols for simulation setup and analysis with Markov state models and transition networks

Birgit Strodel, Suman Samantray, Wibke Schumann, 2020, bioRxiv.

MUFOLD: A new solution for protein 3D structure prediction

Qingguo Wang, Dong Xu, Yi Shang, 2010, Proteins.

Prediction of protein tertiary structures using MUFOLD.

Qingguo Wang, Dong Xu, Yi Shang, 2012, Methods in molecular biology.