Yi Liu

发表

Sources of variation in ancestral sequence reconstruction for HIV-1 envelope genes

D. Nickle, M. Jensen, A. Rodrigo, 2006, Evolutionary bioinformatics online.

EVOLUTION OF INTRAHOST HIV-1 GENETIC DIVERSITY DURING CHRONIC INFECTION

James I Mullins, David C Nickle, Yi Liu, 2006, Evolution; international journal of organic evolution.

Impact of Mutations in Highly Conserved Amino Acids of the HIV-1 Gag-p24 and Env-gp120 Proteins on Viral Replication in Different Genetic Backgrounds

J. Mullins, E. Arts, Yi Liu, 2014, PloS one.

A sensitive real-time PCR based assay to estimate the impact of amino acid substitutions on the competitive replication fitness of human immunodeficiency virus type 1 in cell culture.

J. Mullins, Yi Liu, S. Holte, 2013, Journal of virological methods.

Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data

Yi Liu, Hong Zhao, Shyamala Iyer, 2013, Bioinform..

Evolution of HIV-1 CTL epitopes: Fitness-Balanced Escape

D. Shriner, J. Mullins, M. McElrath, 2007 .

Evolution of Human Immunodeﬁciency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape (cid:1)

D. Shriner, J. Mullins, M. McElrath, 2007 .

Selection dramatically reduces effective population size in HIV-1 infection

J. Mittler, Yi Liu, 2008, BMC Evolutionary Biology.

Variable Fitness Impact of HIV-1 Escape Mutations to Cytotoxic T Lymphocyte (CTL) Response

Eric J. Arts, Yi Liu, J. Mullins, 2009, PLoS pathogens.

Evolution of CCR5 Use before and during Coreceptor Switching

J. Mullins, L. Heath, D. Mosier, 2008, Journal of Virology.

DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites.

Sergei L. Kosakovsky Pond, Yi Liu, Gerald H Learn, 2010, BioTechniques.

EVOLUTION OF INTRAHOST HIV ‐ 1 GENETIC DIVERSITY DURING CHRONIC INFECTION

D. Nickle, D. Shriner, J. Mullins, 2006 .

Waiting times for the appearance of cytotoxic T-lymphocyte escape mutants in chronic HIV-1 infection.

James I Mullins, Yi Liu, John E Mittler, 2006, Virology.

Pairwise Growth Competition Assay for Determining the Replication Fitness of Human Immunodeficiency Viruses

J. Mullins, Wenjie Deng, Yi Liu, 2015, Journal of visualized experiments : JoVE.

Conserved HIV-1 epitopes continuously elicit subdominant cytotoxic T-lymphocyte responses.

J. Mullins, M. McElrath, A. Collier, 2009, The Journal of infectious diseases.

Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape

D. Shriner, J. Mullins, M. McElrath, 2007, Journal of Virology.

Demographic Processes Affect HIV-1 Evolution in Primary Infection before the Onset of Selective Processes

Joshua T. Herbeck, Wenjie Deng, Morgane Rolland, 2011, Journal of Virology.

Minimization of genetic distances by the consensus, ancestral, and center-of-tree (COT) sequences for HIV-1 variants within an infected individual and the design of reagents to test immune reactivity.

R. Shankarappa, C. Rinaldo, L. Heath, 2006, Virology.

Molecular clock-like evolution of human immunodeficiency virus type 1.

Gerald H Learn, James I Mullins, David C Nickle, 2004, Virology.

Novel Cytotoxic T-Lymphocyte Escape Mutation by a Three-Amino-Acid Insertion in the Human Immunodeficiency Virus Type 1 p6Pol and p6Gag Late Domain Associated with Drug Resistance

J. Mullins, M. McElrath, Yi Liu, 2007, Journal of Virology.

Selection on the Human Immunodeficiency Virus Type 1 Proteome following Primary Infection

David C. Nickle, Lawrence Corey, Jianhong Cao, 2006, Journal of Virology.

Superior Control of HIV-1 Replication by CD8+ T Cells Targeting Conserved Epitopes: Implications for HIV Vaccine Design

J. Mullins, T. Hertz, A. Collier, 2013, PloS one.

Dynamics of Viral Evolution and CTL Responses in HIV-1 Infection

Yi Liu, J. Mullins, M. McElrath, 2011, PloS one.

HIV-1 Envelope Subregion Length Variation during Disease Progression

G. Gottlieb, J. Mullins, S. Hawes, 2010, PLoS pathogens.

Env length and N-linked glycosylation following transmission of human immunodeficiency virus Type 1 subtype B viruses.

J. Mullins, A. Collier, L. Corey, 2008, Virology.

Preinfection Human Immunodeficiency Virus (HIV)-Specific Cytotoxic T Lymphocytes Failed To Prevent HIV Type 1 Infection from Strains Genetically Unrelated to Viruses in Long-Term Exposed Partners

J. Mullins, M. McElrath, L. Corey, 2009, Journal of Virology.

Virus-Specific CD8+ T-Cell Responses Better Define HIV Disease Progression than HLA Genotype

J. Mullins, M. McElrath, A. Collier, 2010, Journal of Virology.

Therapeutic conserved elements (CE) DNA vaccine induces strong T-cell responses against highly conserved viral sequences during simian-human immunodeficiency virus infection

J. Mullins, D. Fuller, G. Pavlakis, 2018, Human vaccines & immunotherapeutics.