D. Clermont

发表

Global phylogeography and evolutionary history of Shigella dysenteriae type 1

M. Blaser, E. Denamur, M. Aslett, 2016, Nature Microbiology.

C. Buchrieser, C. Buchrieser, C. Bizet, 2010, International journal of systematic and evolutionary microbiology.

Novel Class A β-Lactamase Sed-1 fromCitrobacter sedlakii: Genetic Diversity of β-Lactamases within the Citrobacter Genus

V. Jarlier, W. Sougakoff, I. Casin, 2001, Antimicrobial Agents and Chemotherapy.

Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.

C. Bizet, S. Brisse, A. Criscuolo, 2017, Antonie van Leeuwenhoek.

Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain

J. P. Davis, David J. Edwards, M. Touchon, 2017, Nature Communications.

Characterization of the chromosomal class A beta-lactamase CKO from Citrobacter koseri.

V. Jarlier, W. Sougakoff, S. Petrella, 2006, FEMS microbiology letters.

The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome

P. Glaser, B. Gonzalez-Zorn, M. López-Sánchez, 2012, Molecular microbiology.

Whole-Genome Sequence of Corynebacterium auriscanis Strain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom

D. Barh, C. Bizet, V. Azevedo, 2016, Genome Announcements.

DNAshell Protects DNA Stored at Room Temperature for Downstream Next-Generation Sequencing Studies.

Georges Dagher, P. Laurent-Puig, H. Blons, 2019, Biopreservation and biobanking.

Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov.

C. Bizet, S. Brisse, D. Clermont, 2015, International journal of systematic and evolutionary microbiology.

Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing

F. Weill, N. Thomson, I. Carle, 2022, Nature communications.

Population structure analysis and laboratory monitoring of Shigella with a standardised core-genome multilocus sequence typing scheme

F. Weill, N. Thomson, I. Carle, 2021, bioRxiv.

Lactobacillus gigeriorum sp. nov., isolated from chicken crop.

C. Bizet, C. Bouchier, D. Clermont, 2012, International journal of systematic and evolutionary microbiology.

Yersinia artesiana sp. nov., Yersinia proxima sp. nov., Yersinia alsatica sp. nov., Yersina vastinensis sp. nov., Yersinia thracica sp. nov. and Yersinia occitanica sp. nov., isolated from humans and animals

J. Pizarro-Cerdá, D. Clermont, S. Brémont, 2020, International journal of systematic and evolutionary microbiology.

Identification of chromosomal antibiotic resistance genes in Streptococcus anginosus ("S. milleri")

D. Clermont, T. Horaud, 1990, Antimicrobial Agents and Chemotherapy.

Genetic and molecular studies of a composite chromosomal element (Tn3705) containing a Tn916-modified structure (Tn3704) in Streptococcus anginosus F22.

D. Clermont, T. Horaud, 1994, Plasmid.

Halomonas lysinitropha sp. nov., a novel halophilic bacterium isolated from a hypersaline wetland.

M. Amoozegar, P. Kämpfer, A. Criscuolo, 2020, International journal of systematic and evolutionary microbiology.

Serratia vespertilionis (García-Fraile et al. 2015) is a later heterotypic synonym of Serratia ficaria (Grimont et al. 1981).

O. Chesneau, E. Lang, P. García-Fraile, 2020, International journal of systematic and evolutionary microbiology.

Revising the taxonomy of the Acinetobacter lwoffii group: The description of Acinetobacter pseudolwoffii sp. nov. and emended description of Acinetobacter lwoffii.

P. Ježek, D. Clermont, A. Nemec, 2019, Systematic and applied microbiology.

Bacillus rhizoplanae sp. nov. from maize roots.

P. Kämpfer, A. Criscuolo, S. Glaeser, 2022, International journal of systematic and evolutionary microbiology.

Streptomyces durocortorensis sp. nov., isolated from oak rhizosphere.

C. Rémond, L. Besaury, D. Clermont, 2022, International journal of systematic and evolutionary microbiology.

Neobacillus rhizosphaerae sp. nov., isolated from the rhizosphere, and reclassification of Bacillus dielmonensis as Neobacillus dielmonensis comb. nov.

P. Kämpfer, A. Criscuolo, S. Glaeser, 2022, International journal of systematic and evolutionary microbiology.

Sutcliffiella rhizosphaerae sp. nov. isolated from roots.

P. Kämpfer, A. Criscuolo, S. Glaeser, 2022, International journal of systematic and evolutionary microbiology.

Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root

P. Kämpfer, A. Criscuolo, S. Glaeser, 2022, Archives of Microbiology.

Pseudoneobacillus rhizosphaerae gen. nov., sp. nov., isolated from maize root rhizosphere.

P. Kämpfer, A. Criscuolo, H. Busse, 2022, International journal of systematic and evolutionary microbiology.

Manual and expert annotation of the nearly complete genome sequence of Staphylococcus sciuri strain ATCC 29059: A reference for the oxidase-positive staphylococci that supports the atypical phenotypic features of the species group.

V. Loux, O. Chesneau, T. Vallaeys, 2017, Systematic and applied microbiology.

Taxonomic characterization of nine strains isolated from clinical and environmental specimens, and proposal of Corynebacterium tuberculostearicum sp. nov.

C. Bizet, P. Glaser, M. Jackson, 2004, International journal of systematic and evolutionary microbiology.

The Genomic Diversification of the Whole Acinetobacter Genus: Origins, Mechanisms, and Consequences

M. Touchon, E. Rocha, G. Cerqueira, 2014, Genome biology and evolution.

Paenibacillus faecis sp. nov., isolated from human faeces.

C. Bizet, S. Gribaldo, C. Malosse, 2015, International journal of systematic and evolutionary microbiology.

Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline

C. Buchrieser, J. Parkhill, M. Davies, 2014, Nature Communications.

Identification of 50 Class D β-Lactamases and 65 Acinetobacter-Derived Cephalosporinases in Acinetobacter spp

G. Cerqueira, J. Wortman, M. Feldgarden, 2013, Antimicrobial Agents and Chemotherapy.

The Intestinal Microbiota Modulates the Anticancer Immune Effects of Cyclophosphamide

Eric Vivier, Chantal Bizet, Laurence Zitvogel, 2013, Science.

Pseudomonas carbonaria sp. nov., isolated from charcoal.

P. Kämpfer, A. Criscuolo, H. Busse, 2021, International journal of systematic and evolutionary microbiology.

Jeotgalicoccus meleagridis sp. nov. isolated from bioaerosol from emissions of a turkey fattening plant and reclassification of Jeotgalicoccus halophilus Liu et al. 2011 as a later heterotypic synonym of Jeotgalicoccus aerolatus Martin et al. 2011.

P. Kämpfer, A. Criscuolo, H. Busse, 2021, International journal of systematic and evolutionary microbiology.

Flavobacterium salmonis sp. nov. isolated from Atlantic salmon (Salmo salar) and formal proposal to reclassify Flavobacterium spartansii as a later heterotypic synonym of Flavobacterium tructae.

P. Kämpfer, A. Criscuolo, H. Busse, 2020, International journal of systematic and evolutionary microbiology.

Flavobacterium panici sp. nov. isolated from the rhizosphere of the switchgrass Panicum virgatum.

P. Kämpfer, A. Criscuolo, H. Busse, 2020, International journal of systematic and evolutionary microbiology.

Xinfangfangia humi sp. nov., isolated from soil amended with humic acid.

P. Kämpfer, A. Criscuolo, H. Busse, 2019, International journal of systematic and evolutionary microbiology.

Pigmentiphaga humi sp. nov., isolated from soil amended with humic acid.

C. Bizet, P. Kämpfer, A. Criscuolo, 2019, International journal of systematic and evolutionary microbiology.

Paracoccus haematequi sp. nov., isolated from horse blood.

C. Bizet, P. Kämpfer, A. Criscuolo, 2019, International journal of systematic and evolutionary microbiology.

Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis.

C. Bizet, L. Kloepper, P. Kämpfer, 2019, International journal of systematic and evolutionary microbiology.

Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.

C. Bizet, S. Brisse, A. Criscuolo, 2017, International journal of systematic and evolutionary microbiology.

Flavobacterium bizetiae sp. nov., isolated from diseased freshwater fish in Canada at the end of the 1970s.

O. Chesneau, P. Kämpfer, A. Criscuolo, 2020, International journal of systematic and evolutionary microbiology.

Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing

F. Weill, N. Thomson, I. Carle, 2022, Nature Communications.

Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names.

Timothy Lilburn, Hans-Peter Klenk, Takuji Kudo, 2013, Systematic and applied microbiology.

Neisseria leonis sp. nov. isolated from rabbits, reclassification of Uruburuella suis, Uruburuella testudinis, Kingella potus, Bergeriella denitrificans and Morococcus cerebrosus into Neisseria genus and reclassification of Neisseria shayeganii into Eikenella genus

O. Gorgette, D. Clermont, P. Rahi, 2023, bioRxiv.

Leucobacter soli sp. nov., from soil amended with humic acid.

P. Kämpfer, A. Criscuolo, Meina Neumann-Schaal, 2021, International journal of systematic and evolutionary microbiology.

Devosia equisanguinis sp. nov., isolated from horse blood.

P. Kämpfer, A. Criscuolo, H. Busse, 2021, International journal of systematic and evolutionary microbiology.

Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays.

P. Kämpfer, A. Criscuolo, H. Busse, 2021, International journal of systematic and evolutionary microbiology.

Arthrobacter ulcerisalmonis sp. nov., isolated from an ulcer of a farmed Atlantic salmon (Salmo salar), and emended description of the genus Arthrobacter sensu lato.

P. Kämpfer, A. Criscuolo, P. Schumann, 2020, International journal of systematic and evolutionary microbiology.

Lactobacillus pasteurii sp. nov. and Lactobacillus hominis sp. nov.

C. Bizet, P. Schumann, C. Bouchier, 2013, International journal of systematic and evolutionary microbiology.

Assessment of DNA encapsulation, a new room-temperature DNA storage method.

Chantal Bizet, Sylvain Santoni, C. Bizet, 2014, Biopreservation and biobanking.

Acinetobacter-Derived-Lactamases β Identification of 50 Class D

G. Cerqueira, J. Wortman, M. Feldgarden, 2014 .

Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections

P. Vos, E. Lang, C. Bizet, 2015, Applied Microbiology and Biotechnology.

Pseudomonas brassicacearum subsp. neoaurantiaca subsp. nov., orange-pigmented bacteria isolated from soil and the rhizosphere of agricultural plants.

E. Ivanova, R. Crawford, C. Bizet, 2009, International journal of systematic and evolutionary microbiology.

New tetracycline resistance determinants coding for ribosomal protection in streptococci and nucleotide sequence of tet(T) isolated from Streptococcus pyogenes A498

O. Chesneau, D. Clermont, G. de Cespédès, 1997, Antimicrobial agents and chemotherapy.

A sensitive and rapid method to determine the viability of freeze‐dried bacterial cells

C. Bizet, P. Lebaron, D. Clermont, 2003, Letters in applied microbiology.

Natural occurrence of structures in oral streptococci and enterococci with DNA homology to Tn916

D. Clermont, G. de Cespédès, T. Horaud, 1992, Antimicrobial Agents and Chemotherapy.

Synthesis and evaluation of original bioisosteres of bacterial type IIA topoisomerases inhibitors

Eloi P. Coutant, F. Bonhomme, H. Munier-Lehmann, 2016 .

Corrigendum: Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline

C. Buchrieser, J. Parkhill, M. Davies, 2015, Nature Communications.

Streptomyces silvae sp. nov., isolated from forest soil

C. Rémond, L. Besaury, D. Clermont, 2021, International journal of systematic and evolutionary microbiology.

Citrobacter europaeus sp. nov., isolated from water and human faecal samples.

L. Peixe, S. Brisse, D. Clermont, 2017, International journal of systematic and evolutionary microbiology.

Optimization of a Top-Down Proteomics Platform for Closely-Related Pathogenic Bacteria Discrimination.

Martial Rey, C. Malosse, J. Chamot-Rooke, 2020, Journal of proteome research.

Bacillus aeolius DSM 15084T (=CIP 107628T) is a strain of Bacillus licheniformis.

R. Pukall, C. Bizet, P. Schumann, 2008, International journal of systematic and evolutionary microbiology.

Paenibacillus auburnensis sp. nov. and Paenibacillus pseudetheri sp. nov., isolated from the rhizosphere of Zea mays.

P. Kämpfer, A. Criscuolo, S. Glaeser, 2023, International journal of systematic and evolutionary microbiology.

Paenibacillus plantiphilus sp. nov. from the plant environment of Zea mays.

P. Kämpfer, A. Criscuolo, S. Glaeser, 2023, Antonie van Leeuwenhoek.

Serratia silvae sp. nov., Isolated from Forest Soil

Gyu-Sung Cho, C. Franz, L. Besaury, 2023, Current Microbiology.

Draft Genome Sequences of Lactobacillus equicursoris CIP 110162T and Lactobacillus sp. Strain CRBIP 24.137, Isolated from Thoroughbred Racehorse Feces and Human Urine, Respectively

V. Loux, C. Bizet, C. Bouchier, 2013, Genome Announcements.

Draft Genome Sequence of Lactobacillus hominis Strain CRBIP 24.179T, Isolated from Human Intestine

V. Loux, C. Bizet, C. Bouchier, 2013, Genome Announcements.

Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar III Strain PH-97028 (=CIP 109753)

O. Chesneau, C. Bizet, A. Criscuolo, 2018, Genome Announcements.

Chryseobacterium oryctis sp. nov., isolated from the gut of the beetle Oryctes rhinoceros, and Chryseobacterium kimseyorum sp. nov., isolated from a stick insect rearing cage.

M. Shelomi, D. Clermont, S. Liaw, 2023, International journal of systematic and evolutionary microbiology.

Pseudomonas brassicacearum subsp. neoaurantiaca subsp. nov., orange-pigmented bacteria isolated from soil and the rhizosphere of agricultural plants.

E. Ivanova, R. Crawford, C. Bizet, 2009, International journal of systematic and evolutionary microbiology.

Paenibacillus faecis sp. nov., isolated from human faeces.

C. Bizet, S. Gribaldo, C. Malosse, 2015, International journal of systematic and evolutionary microbiology.

Microbacterium binotii sp. nov., isolated from human blood.

C. Bizet, C. Bouchier, M. Welker, 2009, International journal of systematic and evolutionary microbiology.

HIV-1 treatment timing shapes the human intestinal memory B-cell repertoire to commensal bacteria

Alexia Kanyavuz, J. Dimitrov, H. Mouquet, 2023, Nature communications.