Andrew Wen

发表

A Review of the End-to-End Methodologies for Clinical Concept Extraction

Hongfang Liu, Feichen Shen, Yiqing Zhao, 2019 .

Cross-lingual Data Transformation and Combination for Text Classification pdf

Jun Jiang, Xia Zhao, Liwei Wang, 2019, ArXiv.

Subgrouping Rare Disease Patients Leveraging the Human Phenotype Ontology Embeddings

Feichen Shen, Hongfang Liu, Andrew Wen, 2020, 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems (CBMS).

Evaluation of patient-level retrieval from electronic health record data for a cohort discovery task

Hongfang Liu, William R. Hersh, Sijia Liu, 2020, JAMIA open.

Evaluation of patient-level retrieval from electronic health record data for a cohort discovery task

William R. Hersh, Arjeh M. Cohen, Sijia Liu, 2019, JAMIA open.

Test collections for electronic health record-based clinical information retrieval

William R. Hersh, Sijia Liu, Steven Bedrick, 2019, JAMIA open.

Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data

Chen Wang, Hongfang Liu, Feichen Shen, 2019, JAMIA open.

Desiderata for delivering NLP to accelerate healthcare AI advancement and a Mayo Clinic NLP-as-a-service implementation

Sijia Liu, Hongfang Liu, Sunyang Fu, 2019, npj Digital Medicine.

Clinical Use of an Information Retrieval Framework for Cohort Discovery from Electronic Health Records

Hongfang Liu, Chunhua Weng, Sijia Liu, 2019, AMIA.

Modeling cancer clinical trials using HL7 FHIR to support downstream applications: A case study with colorectal cancer data

Yue Yu, Nansu Zong, Sijia Liu, 2020, Int. J. Medical Informatics.

ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model

Yue Yu, Guoqian Jiang, Andrew Wen, 2019, J. Biomed. Informatics.

Implementation of a Cohort Retrieval System for Clinical Data Repositories Using the Observational Medical Outcomes Partnership Common Data Model: Proof-of-Concept System Validation

Feichen Shen, Sijia Liu, Hongfang Liu, 2020, JMIR medical informatics.

Aligned-Layer Text Search in Clinical Notes

Hongfang Liu, Stephen T. Wu, Yanshan Wang, 2020, MedInfo.

Constructing Node Embeddings for Human Phenotype Ontology to Assist Phenotypic Similarity Measurement

Hongfang Liu, Liwei Wang, Feichen Shen, 2018, 2018 IEEE International Conference on Healthcare Informatics Workshop (ICHI-W).

Leveraging Association Rule Mining to Detect Pathophysiological Mechanisms of Chronic Kidney Disease Complicated by Metabolic Syndrome

Hongfang Liu, Liwei Wang, Feichen Shen, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology

Feichen Shen, Sijia Liu, Liwei Wang, 2019, J. Biomed. Informatics.

EMIRS: An Electronic Medical Information Retrieval System by Leveraging both Structured and Unstructured Electronic Health Records

Hongfang Liu, Yanshan Wang, Sijia Liu, 2018, AMIA.

Adapting and evaluating a deep learning language model for clinical why-question answering

Sungrim Moon, Andrew Wen, Mohamed Y. Elwazir, 2019, JAMIA open.

Developing a RadLex-based Name Entity Recognition Tool for Mining Free-Text Radiology Reports

Guoqian Jiang, Andrew Wen, Shintaro Tsuji, 2018, AMIA.

Enrich Rare Disease Phenotypic Characterizations via a Graph Convolutional Network Based Recommendation System

Feichen Shen, Hongfang Liu, Andrew Wen, 2020, 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems (CBMS).

Detecting and Filtering Immune-Related Adverse Events Signal Based on Text Mining and Observational Health Data Sciences and Informatics Common Data Model: Framework Development Study

Nansu Zong, Guoqian Jiang, Nilay Shah, 2020, JMIR medical informatics.

Extraction of Clinical Lab Results: Design and Evaluation of a cTAKES Component

Andrew Wen, 2017 .

Comparisons of Graph Neural Networks on Cancer Classification Leveraging a Joint of Phenotypic and Genetic Features pdf

Feichen Shen, Hongfang Liu, Andrew Wen, 2021, ArXiv.

Utilization of Electronic Medical Records and Biomedical Literature to Support the Diagnosis of Rare Diseases Using Data Fusion and Collaborative Filtering Approaches

Hongfang Liu, Feichen Shen, Yanshan Wang, 2018, JMIR medical informatics.

Integrating Electronic Health Record Data into the ADEpedia-on-OHDSI Platform for Improved Signal Detection: A Case Study of Immune-related Adverse Events.

Jun Chen, Yue Yu, Nansu Zong, 2020, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

A Query Taxonomy Describes Performance of Patient-Level Retrieval from Electronic Health Record Data

William R. Hersh, Sijia Liu, Steven Bedrick, 2019, HSDM@WSDM.

Evaluating the Impact of Dictionary Updates on Automatic Annotations Based on Clinical NLP Systems.

Sunghwan Sohn, Feichen Shen, Liwei Wang, 2019, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Drug-target prediction utilizing heterogeneous bio-linked network embeddings

Yue Yu, Ning Li, Nansu Zong, 2019, Briefings Bioinform..

Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP

Hongfang Liu, Majid Rastegar-Mojarad, Guoqian Jiang, 2018, AMIA.

CREATE: Cohort Retrieval Enhanced by Analysis of Text from Electronic Health Records using OMOP Common Data Model pdf

Hongfang Liu, Liwei Wang, Feichen Shen, 2019, ArXiv.

Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries

Hongfang Liu, Fei Wang, Yuan Luo, 2019, J. Biomed. Informatics.

A Deep Profiling and Visualization Framework to Audit Clinical Assessment Variation

Feichen Shen, Hongfang Liu, Andrew Wen, 2020, 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems (CBMS).

Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data

Hongfang Liu, Sunghwan Sohn, Feichen Shen, 2018, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

MayoNLPTeam at the TREC 2018 Precision Medicine Track: Simple Information Retrieval Approach Is the Best

Hongfang Liu, Yanshan Wang, Sijia Liu, 2018, TREC.

Development of Clinical Concept Extraction Applications: A Methodology Review pdf

Hongfang Liu, Feichen Shen, Yiqing Zhao, 2019, ArXiv.

Enhancing Clinical Information Retrieval through Context-Aware Queries and Indices

Sijia Liu, Hongfang Liu, Yanshan Wang, 2019, 2019 IEEE International Conference on Big Data (Big Data).

Clinical concept extraction: A methodology review

Sunghwan Sohn, Liwei Wang, Feichen Shen, 2020, J. Biomed. Informatics.

An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C) pdf

Christopher G. Chute, Peter Szolovits, Liwei Wang, 2021, ArXiv.

Leveraging a Joint of Phenotypic and Genetic Features on Cancer Patient Subgrouping pdf

Feichen Shen, Hongfang Liu, Chen Wang, 2021, ArXiv.

Developing a RadLex-Based Named Entity Recognition Tool for Mining Textual Radiology Reports: Development and Performance Evaluation Study.

Katsuhiko Ogasawara, Andrew Wen, Shintaro Tsuji, 2020, Journal of medical Internet research.

Developing an FHIR-Based Computational Pipeline for Automatic Population of Case Report Forms for Colorectal Cancer Clinical Trials Using Electronic Health Records

Nansu Zong, Guoqian Jiang, Hongfang Liu, 2020, JCO clinical cancer informatics.