K. Forest

发表

High-Throughput Metabolic Network Analysis and Metatranscriptomics of a Cosmopolitan and Streamlined Freshwater Lineage

Joshua J. Hamilton, R. Malmstrom, K. McMahon, 2017 .

Metabolic Network Analysis and Metatranscriptomics Reveals Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage aci

Joshua J. Hamilton, R. Malmstrom, K. McMahon, 2017, bioRxiv.

Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI

Joshua J. Hamilton, R. Malmstrom, K. McMahon, 2017, mSystems.

Assembly and antigenicity of the Neisseria gonorrhoeae pilus mapped with antibodies

J. Tainer, E. Getzoff, H. M. Geysen, 1996, Infection and immunity.

High Resolution Structure of Deinococcus Bacteriophytochrome Yields New Insights into Phytochrome Architecture and Evolution*

R. Vierstra, Junrui Zhang, K. Forest, 2007, Journal of Biological Chemistry.

A Hendecad Motif Is Preferred for Heterochiral Coiled-Coil Formation.

S. Gellman, K. Forest, D. E. Mortenson, 2019, Journal of the American Chemical Society.

Characterization of the yellow fever mosquito sterol carrier protein-2 like 3 gene and ligand-bound protein structure

D. Dyer, Q. Lan, K. Forest, 2009, Molecular and Cellular Biochemistry.

Effects of Single α-to-β Residue Replacements on Structure and Stability in a Small Protein: Insights from Quasiracemic Crystallization.

S. Gellman, K. Forest, D. E. Mortenson, 2016, Journal of the American Chemical Society.

Quasiracemate Crystal Structures of Magainin 2 Derivatives Support the Functional Significance of the Phenylalanine Zipper Motif.

S. Gellman, K. Satyshur, B. Weisblum, 2015, Journal of the American Chemical Society.

Light on the cell cycle of the non-photosynthetic bacterium Ramlibacter tataouinensis

J. Lavergne, P. Ortet, G. De Luca, 2019, Scientific Reports.

Crystal Structure of the Pseudomonas aeruginosa Virulence Factor Regulator

K. Forest, T. J. Cordes, Gregory A Worzalla, 2011, Journal of bacteriology.

Containerless vitrification of mammalian oocytes and embryos

B. Bavister, K. Forest, E. A. Lyons, 1999, Nature Biotechnology.

Reconstitution of a minimal machinery capable of assembling periplasmic type IV pili

G. Waksman, A. Busch, K. Forest, 2017, Proceedings of the National Academy of Sciences.

Shearing and Enrichment of Extracellular Type IV Pili.

K. Forest, A. Gonzalez Rivera, A. González Rivera, 2017, Methods in molecular biology.

3D structure/function analysis of PilX reveals how minor pilins can modulate the virulence properties of type IV pili

D. Dyer, X. Nassif, K. Forest, 2007, Proceedings of the National Academy of Sciences.

A Surface Exposed, Two-Domain Lipoprotein Cargo of a Type XI Secretion System Promotes Colonization of Host Intestinal Epithelia Expressing Glycans

R. Hettich, P. Abraham, S. Campagna, 2022, Frontiers in Microbiology.

Evidence for phenylalanine zipper-mediated dimerization in the X-ray crystal structure of a magainin 2 analogue.

S. Gellman, B. Weisblum, K. Forest, 2013, Journal of the American Chemical Society.

Type IV Pilin Structures: Insights on Shared Architecture, Fiber Assembly, Receptor Binding and Type II Secretion

K. Forest, Johanna K. Hansen, 2006, Journal of Molecular Microbiology and Biotechnology.

Crystallographic structure reveals phosphorylated pilin from Neisseria: phosphoserine sites modify type IV pilus surface chemistry and fibre morphology

J. Tainer, M. Koomey, K. Forest, 1999, Molecular microbiology.

Differential impact of β and γ residue preorganization on α/β/γ-peptide helix stability in water.

S. Gellman, K. Satyshur, K. Forest, 2013, Journal of the American Chemical Society.

CbpD crystal structure adds intrigue to substrate-specificity motifs in chitin-active lytic polysaccharide monooxygenases

R. Voulhoux, G. Ball, K. Forest, 2022, bioRxiv.

Diversity, distribution, and expression of opsin genes in freshwater lakes

Sarah L. R. Stevens, K. McMahon, J. Dwulit-Smith, 2022, bioRxiv.

Protein engineering for structure determination

C. Schutt, K. Forest, 1992 .

In through the Out Door: A Functional Virulence Factor Secretion System Is Necessary for Phage Infection in Ralstonia solanacearum

Pier-Luc Plante, C. Allen, S. Moineau, 2022, mBio.

acI Actinobacteria Assemble a Functional Actinorhodopsin with Natively Synthesized Retinal

Joshua J. Hamilton, K. McMahon, J. Dwulit-Smith, 2018, Applied and Environmental Microbiology.

Reconstitution of a minimal machinery capable of assembling type IV pili 1 2

G. Waksman, A. Busch, K. Forest, 2017 .

Beyond Slam: the DUF560 family outer membrane protein superfamily SPAM has distinct network subclusters that suggest a role in non-lipidated substrate transport and bacterial environmental adaptation

H. Goodrich-Blair, A. Grossman, K. Forest, 2020 .

Bacterial phytochromes: More than meets the light

M. Auldridge, K. Forest, 2011, Critical reviews in biochemistry and molecular biology.

A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome

R. Vierstra, K. Forest, J. Brunzelle, 2005, Nature.

Type IV pilin structure and assembly: X-ray and EM analyses of Vibrio cholerae toxin-coregulated pilus and Pseudomonas aeruginosa PAK pilin.

John A Tainer, Katrina T Forest, Mark Yeager, 2003, Molecular cell.

Tightening the knot in phytochrome by single-molecule atomic force microscopy.

Matthias Rief, Katrina T Forest, Joachim Dzubiella, 2008, Biophysical journal.

Evaluation of β‐Amino Acid Replacements in Protein Loops: Effects on Conformational Stability and Structure

S. Gellman, I. Guzei, K. Forest, 2018, Chembiochem : a European journal of chemical biology.

Quasiracemic crystallization as a tool to assess the accommodation of noncanonical residues in nativelike protein conformations.

S. Gellman, K. Satyshur, I. Guzei, 2012, Journal of the American Chemical Society.

Targeting diverse protein–protein interaction interfaces with α/β-peptides derived from the Z-domain scaffold

S. Gellman, W. Murphy, K. Forest, 2015, Proceedings of the National Academy of Sciences.

Recognition of Microbial Glycans by Human Intelectin

David F. Smith, Xuezheng Song, R. Cummings, 2015, Nature Structural &Molecular Biology.

Structures of Xenopus Embryonic Epidermal Lectin Reveal a Conserved Mechanism of Microbial Glycan Recognition*

L. Kiessling, K. Forest, K. Wangkanont, 2016, The Journal of Biological Chemistry.

The Type Eleven Secretion System

H. Goodrich-Blair, A. Grossman, K. Forest, 2021 .

Description of a widespread bacterial secretion system with chemically diverse substrates

H. Goodrich-Blair, A. Grossman, K. Forest, 2020, bioRxiv.

Conformational Control of UDP-Galactopyranose Mutase Inhibition.

L. Kiessling, Valerie J. Winton, K. Forest, 2017, Biochemistry.

Virtual Screening for UDP-Galactopyranose Mutase Ligands Identifies a New Class of Antimycobacterial Agents.

Nir London, Katrina T Forest, Brian K Shoichet, 2015, ACS chemical biology.

Pigment-protein interactions in phytochromes probed by fluorescence line narrowing spectroscopy.

K. Moffat, J. Kennis, T. Lamparter, 2013, The journal of physical chemistry. B.

Functional Dissection of a Conserved Motif within the Pilus Retraction Protein PilT

Kelly G. Aukema, K. Forest, T. Herdendorf, 2005, Journal of bacteriology.

Mutational Analysis of Deinococcus radiodurans Bacteriophytochrome Reveals Key Amino Acids Necessary for the Photochromicity and Proton Exchange Cycle of Phytochromes*

Katrina T Forest, Richard D Vierstra, R. Vierstra, 2008, Journal of Biological Chemistry.

Cu,Zn superoxide dismutase structure from a microbial pathogen establishes a class with a conserved dimer interface.

E. Getzoff, P. Langford, J. Kroll, 2000, Journal of molecular biology.

T-Cell Responses to the Trypanosome Variant Surface Glycoprotein Are Not Limited to Hypervariable Subregions

K. Forest, J. Bangs, Taylor R. T. Dagenais, 2008, Infection and Immunity.

Removal of Chromophore-Proximal Polar Atoms Decreases Water Content and Increases Fluorescence in a Near Infrared Phytofluor

Nicolaas M. Angenent-Mari, K. Satyshur, K. Forest, 2015, Front. Mol. Biosci..

Aquifex aeolicus PilT, Homologue of a Surface Motility Protein, Is a Thermostable Oligomeric NTPase

D. McCaslin, K. Forest, T. Herdendorf, 2002, Journal of bacteriology.

The non-detergent sulfobetaine-201 acts as a pharmacological chaperone to promote folding and crystallization of the type II TGF-β receptor extracellular domain.

L. Kiessling, K. Forest, K. Wangkanont, 2015, Protein expression and purification.

Sub-picomolar Inhibition of HIV-1 Protease with a Boronic Acid.

Katrina T Forest, Ronald T Raines, R. Raines, 2018, Journal of the American Chemical Society.

Stilbene Boronic Acids Form a Covalent Bond with Human Transthyretin and Inhibit Its Aggregation.

R. Raines, K. Forest, I. Windsor, 2017, Journal of medicinal chemistry.

Extracellular Bacterial Pathogen Induces Host Cell Surface Reorganization to Resist Shear Stress

S. Guadagnini, M. Prevost, N. Henry, 2009, PLoS pathogens.

Type IV pili: dynamics, biophysics and functional consequences

B. Maier, L. Craig, K. Forest, 2019, Nature Reviews Microbiology.

Stereoelectronic and steric effects in side chains preorganize a protein main chain

R. Raines, K. Satyshur, M. Shoulders, 2009, Proceedings of the National Academy of Sciences.

Structure of the fibre-forming protein pilin at 2.6 Å resolution

John A. Tainer, Elizabeth D. Getzoff, Hans E. Parge, 1995, Nature.

Structural insights into the Type II secretion nanomachine.

K. Forest, Rembrandt J. F. Haft, Lorraine S. McLaughlin, 2012, Current opinion in structural biology.

Remodeling of replication initiator proteins

M. Filutowicz, K. Forest, 2003, Nature Structural Biology.

Type IV pili: dynamics, biophysics and functional consequences

B. Maier, L. Craig, K. Forest, 2019, Nature Reviews Microbiology.

A Widespread Bacterial Secretion System with Diverse Substrates

H. Goodrich-Blair, A. Grossman, K. Forest, 2021, mBio.

Evidence of a Bacterial Receptor for Lysozyme: Binding of Lysozyme to the Anti-σ Factor RsiV Controls Activation of the ECF σ Factor σV

J. Houtman, K. Forest, Kyle B. Williams, 2014, PLoS genetics.

Vivid watercolor paintbox for eukaryotic algae

K. Forest, 2014, Proceedings of the National Academy of Sciences.

Conserved Regions from Neisseria gonorrhoeae Pilin Are Immunosilent and Not Immunosuppressive

K. Forest, Karen P. Demick, J. M. Mansfield, 2007, Infection and Immunity.

Assemblies of replication initiator protein on symmetric and asymmetric DNA sequences depend on multiple protein oligomerization surfaces.

J. Wu, M. Urh, M. Filutowicz, 1998, Journal of molecular biology.

Diversity, distribution, and expression of opsin genes in freshwater lakes

Sarah L. R. Stevens, K. McMahon, J. Dwulit-Smith, 2023, bioRxiv.

Arm-in-Arm Response Regulator Dimers Promote Intermolecular Signal Transduction

K. Satyshur, K. Forest, Neydis Moreno Morales, 2016, Journal of bacteriology.

Evidence for small-molecule-mediated loop stabilization in the structure of the isolated Pin1 WW domain.

S. Gellman, K. Forest, D. E. Mortenson, 2013, Acta crystallographica. Section D, Biological crystallography.

Type-4 pilus-structure: outside to inside and top to bottom--a minireview.

J. Tainer, K. Forest, 1997, Gene.

P. aeruginosa PilT structures with and without nucleotide reveal a dynamic type IV pilus retraction motor.

K. Satyshur, A. Misic, K. Forest, 2010, Journal of molecular biology.

Crystal structures of the pilus retraction motor PilT suggest large domain movements and subunit cooperation drive motility.

Kelly G. Aukema, K. Satyshur, A. Misic, 2007, Structure.

Conformational changes of glucose/galactose‐binding protein illuminated by open, unliganded, and ultra‐high‐resolution ligand‐bound structures

L. Kiessling, K. Forest, M. Jack Borrok, 2007, Protein science : a publication of the Protein Society.

Origins of Fluorescence in Evolved Bacteriophytochromes*

J. Ihalainen, M. Auldridge, K. Forest, 2014, The Journal of Biological Chemistry.

Structure-guided Engineering Enhances a Phytochrome-based Infrared Fluorescent Protein*

K. Satyshur, M. Auldridge, K. Forest, 2011, The Journal of Biological Chemistry.

Bacterial Surface Motility: Slime Trails, Grappling Hooks and Nozzles

A. Merz, K. Forest, 2002, Current Biology.

The type II secretion arrowhead: the structure of GspI–GspJ–GspK

K. Forest, 2008, Nature Structural &Molecular Biology.

Use of a Stereochemical Strategy To Probe the Mechanism of Phenol-Soluble Modulin α3 Toxicity.

S. Gellman, K. Satyshur, Chenxuan Wang, 2019, Journal of the American Chemical Society.

Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage

R. Stepanauskas, R. Malmstrom, M. Martínez-García, 2014, The ISME Journal.

Unraveling the Self-Assembly of the Pseudomonas aeruginosa XcpQ Secretin Periplasmic Domain Provides New Molecular Insights into Type II Secretion System Secreton Architecture and Dynamics

A. Desmyter, C. Cambillau, A. Roussel, 2017, mBio.

The pilus-retraction protein PilT: ultrastructure of the biological assembly.

K. Satyshur, K. Forest, T. Herdendorf, 2004, Acta crystallographica. Section D, Biological crystallography.

Chromophore heterogeneity and photoconversion in phytochrome crystals and solution studied by resonance Raman spectroscopy.

R. Vierstra, P. Scheerer, N. Krauß, 2008, Angewandte Chemie.

Three-dimensional structure/function analysis of SCP-2-like2 reveals differences among SCP-2 family memberss⃞ Published, JLR Papers in Press, December 15, 2007.

D. Dyer, Q. Lan, K. Forest, 2008, Journal of Lipid Research.

Ligand binding and substrate discrimination by UDP-galactopyranose mutase.

W. M. Westler, L. Kiessling, K. Forest, 2009, Journal of molecular biology.

High-resolution structures of a heterochiral coiled coil

S. Gellman, M. Mahanthappa, K. Forest, 2015, Proceedings of the National Academy of Sciences.

Consequences of the loss of O‐linked glycosylation of meningococcal type IV pilin on piliation and pilus‐mediated adhesion

J. Tainer, X. Nassif, M. Marceau, 1998, Molecular microbiology.

A Polyketide Synthase Acyltransferase Domain Structure Suggests a Recognition Mechanism for Its Hydroxymalonyl-Acyl Carrier Protein Substrate

D. Dyer, B. Kevany, K. Forest, 2014, PloS one.

acI Actinobacteria Assemble a Functional Actinorhodopsin with Natively Synthesized Retinal

Joshua J. Hamilton, K. McMahon, J. Dwulit-Smith, 2018, Applied and Environmental Microbiology.

Structural interactions define assembly adapter function of a type II secretion system pseudopilin.

R. Voulhoux, G. Ball, L. Quinton, 2021, Structure.

Structure and Assembly of Type IV Pilins

K. Forest, 2005 .

Multidisciplinary Interrogation of a Crucial Protein Interface in the Type II Secretion System

R. Voulhoux, G. Ball, L. Quinton, 2020, bioRxiv.

X-ray crystallography reveals a reduced substrate complex of UDP-galactopyranose mutase poised for covalent catalysis by flavin.

W. M. Westler, L. Kiessling, K. Forest, 2009, Biochemistry.

Cell-free production of integral membrane aspartic acid proteases reveals zinc-dependent methyltransferase activity of the Pseudomonas aeruginosa prepilin peptidase PilD

Michael A. Goren, B. Fox, S. Makino, 2012, MicrobiologyOpen.

Editorial overview: Macromolecular machines and assemblies: Rise and fall at the molecular level.

Katrina T Forest, C. Hill, K. Forest, 2015, Current opinion in structural biology.

The crystal structure of CbpD clarifies substrate-specificity motifs in chitin-active lytic polysaccharide monooxygenases

C. Cambillau, R. Voulhoux, G. Ball, 2022, Acta crystallographica. Section D, Structural biology.

Enterotoxigenic Escherichia coli CS1 Pilus: Not One Structure but Several

K. Forest, 2013, Journal of bacteriology.

Orthogonal translation with 5‐cyanotryptophan as an infrared probe for local structural information, electrostatics, and hydrogen bonding

N. Budisa, K. Forest, P. Hildebrandt, 2023, Protein science : a publication of the Protein Society.

On the Role of a Conserved Tryptophan in the Chromophore Pocket of Cyanobacteriochrome.

N. Budisa, K. Forest, P. Hildebrandt, 2023, Journal of Molecular Biology.

Retention of Native Quaternary Structure in Racemic Melittin Crystals.

S. Gellman, B. Weisblum, K. Forest, 2019, Journal of the American Chemical Society.

Structure of the minor pseudopilin XcpW from the Pseudomonas aeruginosa type II secretion system.

D. Dyer, R. Voulhoux, K. Forest, 2011, Acta crystallographica. Section D, Biological crystallography.