H. Nojiri

发表

Single-Cell Analyses Revealed Transfer Ranges of IncP-1, IncP-7, and IncP-9 Plasmids in a Soil Bacterial Community

A. Hosoyama, M. Ohkuma, K. Kimbara, 2013, Applied and Environmental Microbiology.

A Toxin-Antitoxin System Confers Stability to the IncP-7 Plasmid pCAR1.

K. Okada, H. Nojiri, Aya Takashima, 2021, Gene.

OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus

Kazunori Okada, Yoko Nishizawa, Koji Miyamoto, 2013, Plant Molecular Biology.

Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice

M. Nishimura, N. Tsutsumi, T. Chujo, 2008, Planta.

Promoter analysis of the rice stemar-13-ene synthase gene OsDTC2, which is involved in the biosynthesis of the phytoalexin oryzalexin S.

T. Toyomasu, K. Okada, N. Shibuya, 2007, Biochimica et biophysica acta.

Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.

Y. Nishizawa, E. Minami, K. Okada, 2015, Journal of plant physiology.

OsTGAP1, a bZIP Transcription Factor, Coordinately Regulates the Inductive Production of Diterpenoid Phytoalexins in Rice*

Kazunori Okada, Koji Miyamoto, Atsushi Okada, 2009, The Journal of Biological Chemistry.

Identification of a Jasmonic Acid-Responsive Region in the Promoter of the Rice 12-Oxophytodienoic Acid Reductase 1 Gene OsOPR1

M. Nishiyama, S. Mori, E. Minami, 2007, Bioscience, biotechnology, and biochemistry.

Diverse Oxygenations Catalyzed by Carbazole 1,9a-Dioxygenase from Pseudomonas sp. Strain CA10

T. Omori, H. Nojiri, H. Yamane, 1999, Journal of bacteriology.

Modulation of primary cell function of host Pseudomonas bacteria by the conjugative plasmid pCAR1.

F. Kawamura, H. Hara, H. Nishida, 2015, Environmental microbiology.

Isolation and characterization of monochloroacetic acid-degrading bacteria.

H. Nojiri, H. Yamane, T. Takemura, 2011, The Journal of general and applied microbiology.

Transcriptome Analysis of Pseudomonas putida KT2440 Harboring the Completely Sequenced IncP-7 Plasmid pCAR1

M. Shintani, H. Nojiri, H. Yamane, 2007, Journal of bacteriology.

The σ54‐dependent transcriptional activator SfnR regulates the expression of the Pseudomonas putida sfnFG operon responsible for dimethyl sulphone utilization

T. Omori, H. Habe, H. Nojiri, 2004, Molecular microbiology.

The rice wound-inducible transcription factor RERJ1 sharing same signal transduction pathway with OsMYC2 is necessary for defense response to herbivory and bacterial blight

T. Sawasaki, A. Miyao, J. Takabayashi, 2021, Plant Molecular Biology.

Recent developments in molecular techniques for identification and monitoring of xenobiotic-degrading bacteria and their catabolic genes in bioremediation

T. Omori, J. Widada, H. Nojiri, 2002, Applied Microbiology and Biotechnology.

Complete Genome Sequence of the Marine Carbazole-Degrading Bacterium Erythrobacter sp. Strain KY5

Y. Ohtsubo, M. Tsuda, K. Okada, 2018, Microbiology Resource Announcements.

A Basic Introduction to Aerobic Biodegradation of Petroleum Aromatic Compounds

Kengo Inoue, O. Pinyakong, H. Nojiri, 2016 .

Diversity of carbazole-degrading bacteria having the car gene cluster: isolation of a novel gram-positive carbazole-degrading bacterium.

Kengo Inoue, T. Omori, H. Habe, 2005, FEMS microbiology letters.

Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase

T. Kimura, T. Omori, H. Nojiri, 1997, Journal of bacteriology.

Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10

T. Omori, H. Nojiri, H. Yamane, 1997, Journal of bacteriology.

Divergent Structures of Carbazole Degradative car Operons Isolated from Gram-negative Bacteria

S. Nakai, Kengo Inoue, Y. Ashikawa, 2004, Bioscience, biotechnology, and biochemistry.

Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in Terrabacter sp. strain DBF63

T. Omori, H. Habe, J. Chung, 2003, Applied Microbiology and Biotechnology.

Genetic Characterization and Evolutionary Implications of a car Gene Cluster in the Carbazole Degrader Pseudomonas sp. Strain CA10

S. Nakai, T. Omori, H. Habe, 2001, Journal of bacteriology.

Bacterial degradation of aromatic compounds via angular dioxygenation.

T. Omori, H. Habe, H. Nojiri, 2001, The Journal of general and applied microbiology.

Genetic Characterization and Evolutionary Implications of a car Gene Cluster in the Carbazole Degrader Pseudomonas sp . Strain CA 10

S. Nakai, T. Omori, H. Habe, 2000 .

Secretion of bacterial xenobiotic-degrading enzymes from transgenic plants by an apoplastic expressional system: an applicability for phytoremediation.

E. Uchida, T. Omori, H. Habe, 2005, Environmental science & technology.

Evolution of the IncP-7 carbazole-degradative plasmid pCAR1 improves survival of its host Pseudomonas fluorescens Pf0-1 in artificial water microcosms.

M. Ohkuma, M. Shintani, H. Nojiri, 2011, Microbiology.

Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1.

K. Kadota, H. Hara, H. Nishida, 2009, Environmental microbiology.

Molecular Bases of Aerobic Bacterial Degradation of Dioxins: Involvement of Angular Dioxygenation

T. Omori, H. Nojiri, 2002, Bioscience, biotechnology, and biochemistry.

Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo-p-dioxins in soil.

Y. Ashikawa, T. Omori, H. Habe, 2002, FEMS microbiology letters.

Rhizoremediation of Dioxin-like Compounds by a Recombinant Rhizobium tropici Strain Expressing Carbazole 1,9a-Dioxygenase Constitutively

T. Omori, H. Habe, H. Nojiri, 2003, Bioscience, biotechnology, and biochemistry.

T. Terada, Z. Fujimoto, K. Okada, 2016, FEBS letters.

Preparation of (±)-2-(2,3-2H2)Jasmonic Acid and Its Methyl Ester, Methyl (±)-2-(2,3-2H2)Jasmonate

S. Fujioka, S. Yoshida, H. Seto, 1996 .

OsJAR1 Contributes Mainly to Biosynthesis of the Stress-Induced Jasmonoyl-Isoleucine Involved in Defense Responses in Rice

M. Iino, Y. Nishizawa, E. Minami, 2013, Bioscience, biotechnology, and biochemistry.

Purification, characterization, and steady-state kinetics of a meta-cleavage compound hydrolase from Pseudomonas fluorescens IPO1.

T. Omori, T. Saku, S. Fushinobu, 2002, Journal of bioscience and bioengineering.

Cloning and nucleotide sequences of the genes involved in the meta-cleavage pathway of cumene degradation in Pseudomonas fluorescens IP01

T. Omori, H. Habe, H. Nojiri, 1996 .

New Classification System for Oxygenase Components Involved in Ring-Hydroxylating Oxygenations

T. Omori, H. Habe, H. Nojiri, 2001, Bioscience, biotechnology, and biochemistry.

Detection of a Bacterial Group within the Phylum Chloroflexi and Reductive-Dehalogenase-Homologous Genes in Pentachlorobenzene-Dechlorinating Estuarine Sediment from the Arakawa River, Japan

A. Kouzuma, T. Hoaki, K. Iwata, 2006 .

Polypeptide Requirement of Multicomponent Monooxygenase DsoABCDEF for Dimethyl Sulfide Oxidizing Activity.

T. Omori, H. Nojiri, H. Yamane, 1999, Bioscience, biotechnology, and biochemistry.

Removal of polycyclic aromatic hydrocarbons from oil-contaminated Kuwaiti soil

T. Omori, H. Nojiri, H. Yamane, 2000, Biotechnology Letters.

Evaluation of trichloroethylene degradation by E. coli transformed with dimethyl sulfide monooxygenase genes and/or cumene dioxygenase genes

T. Omori, H. Nojiri, H. Yamane, 1999, Biotechnology Letters.

The α- and β-Subunit Boundary at the Stem of the Mushroom-Like α3β3-Type Oxygenase Component of Rieske Non-Heme Iron Oxygenases Is the Rieske-Type Ferredoxin-Binding Site

T. Terada, K. Okada, H. Nojiri, 2022, Applied and Environmental Microbiology.

Identification and Characterization of Genes Encoding Carbazole 1 , 9 a-Dioxygenase in Pseudomonas sp . Strain CA 10

T. Omori, H. Nojiri, H. Yamane, 1997 .

Pseudomonas sp . strain CA 10 . encoding carbazole 1 , 9 a-dioxygenase in Identification and characterization of genes

T. Omori, H. Nojiri, H. Yamane, 1997 .

Purification and Characterization of Carbazole 1,9a-Dioxygenase, a Three-Component Dioxygenase System of Pseudomonas resinovorans Strain CA10

T. Omori, H. Habe, H. Nojiri, 2002, Applied and Environmental Microbiology.

Enhanced degradation of carbazole and 2,3-dichlorodibenzo-p-dioxin in soils by Pseudomonas resinovorans strain CA10.

T. Omori, H. Habe, J. Widada, 2002, Chemosphere.

Preliminary examinations for applying a carbazole-degrader, Pseudomonas sp. strain CA10, to dioxin-contaminated soil remediation

T. Omori, H. Habe, H. Tsuji, 2001, Applied Microbiology and Biotechnology.

Crystallization and preliminary crystallographic analysis of the terminal oxygenase component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10.

Z. Fujimoto, H. Mizuno, T. Omori, 2002, Acta crystallographica. Section D, Biological crystallography.

Degradation of Chlorinated Dibenzofurans and Dibenzo-p-Dioxins by Two Types of Bacteria Having Angular Dioxygenases with Different Features

T. Omori, H. Habe, Jong-Hoon Lee, 2001, Applied and Environmental Microbiology.

The Sphingomonas Plasmid pCAR3 Is Involved in Complete Mineralization of Carbazole

Kengo Inoue, T. Omori, H. Habe, 2006, Journal of bacteriology.

Plasmid pCAR3 Contains Multiple Gene Sets Involved in the Conversion of Carbazole to Anthranilate

T. Omori, H. Habe, H. Nojiri, 2006, Applied and Environmental Microbiology.

Characterization and identification of genes essential for dimethyl sulfide utilization in Pseudomonas putida strain DS1

T. Omori, H. Habe, H. Nojiri, 2003, Applied Microbiology and Biotechnology.

Marinobacterium sp. strain DMS-S1 uses dimethyl sulphide as a sulphur source after light-dependent transformation by excreted flavins.

T. Omori, H. Habe, H. Fuse, 2003, Environmental microbiology.

A CysB-regulated and sigma54-dependent regulator, SfnR, is essential for dimethyl sulfone metabolism of Pseudomonas putida strain DS1.

T. Omori, H. Habe, H. Nojiri, 2003, Microbiology.

Dioxin catabolic genes are dispersed on the Terrabacter sp. DBF63 genome.

T. Omori, H. Habe, H. Nojiri, 2002, Biochemical and biophysical research communications.

Organization and Transcriptional Characterization of Catechol Degradation Genes Involved in Carbazole Degradation by Pseudomonas resinovorans Strain CA10

T. Omori, H. Habe, M. Shintani, 2002, Bioscience, biotechnology, and biochemistry.

Quantification of the carbazole 1,9a-dioxygenase gene by real-time competitive PCR combined with co-extraction of internal standards.

T. Omori, H. Habe, J. Widada, 2001, FEMS microbiology letters.

Suppressive effect of abscisic acid on systemic acquired resistance in tobacco plants

M. Yasuda, M. Kusajima, H. Nakashita, 2010, Journal of General Plant Pathology.

Effects of carbazole-degradative plasmid pCAR1 on biofilm morphology in Pseudomonas putida KT2440.

Seunguk Lee, K. Okada, H. Nojiri, 2016, Environmental microbiology reports.

Behavior of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial environmental samples

M. Shintani, Kazuhiro Matsui, H. Nojiri, 2008, Applied Microbiology and Biotechnology.

Genomic evidence for convergent evolution of gene clusters for momilactone biosynthesis in land plants

H. Kawaide, Ken-ichiro Hayashi, M. Timko, 2020, Proceedings of the National Academy of Sciences.

Involvement of Jasmonic Acid in Elicitor-Induced Phytoalexin Production in Suspension-Cultured Rice Cells

T. Omori, N. Murofushi, A. Yamada, 1996, Plant physiology.

ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids.

M. Ohkuma, M. Tsuda, Y. Nagata, 2012, Environmental microbiology.

Oligomerization and DNA-Binding Capacity of Pmr, a Histone-Like Protein H1 (H-NS) Family Protein Encoded on IncP-7 Carbazole-Degradative Plasmid pCAR1

Kazuya Watanabe, H. Nojiri, H. Yamane, 2011, Bioscience, biotechnology, and biochemistry.

Structure and Function of Aromatic-Ring Hydroxylating Dioxygenase System

Kengo Inoue, H. Nojiri, 2014 .

The AtPPT1 gene encoding 4-hydroxybenzoate polyprenyl diphosphate transferase in ubiquinone biosynthesis is required for embryo development in Arabidopsis thaliana

K. Yazaki, M. Kawamukai, K. Okada, 2004, Plant Molecular Biology.

Genes Involved in Aniline Degradation by Delftia acidovorans Strain 7N and Its Distribution in the Natural Environment

E. Uchida, T. Omori, H. Nojiri, 2004, Bioscience, biotechnology, and biochemistry.

Crystallization and preliminary X-ray diffraction analyses of the redox-controlled complex of terminal oxygenase and ferredoxin components in the Rieske nonhaem iron oxygenase carbazole 1,9a-dioxygenase

Z. Fujimoto, Y. Ashikawa, K. Okada, 2014, Acta crystallographica. Section F, Structural biology communications.

Crystallization and preliminary X-ray diffraction studies of the reduced form of the terminal oxygenase component of the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.

Z. Fujimoto, K. Okada, H. Nojiri, 2013, Acta crystallographica. Section F, Structural biology and crystallization communications.

Crystallization and preliminary X-ray diffraction studies of a terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.

Z. Fujimoto, Kengo Inoue, Y. Ashikawa, 2010, Acta crystallographica. Section F, Structural biology and crystallization communications.

Crystallization and preliminary X-ray diffraction studies of a ferredoxin reductase component of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.

Z. Fujimoto, Kengo Inoue, Y. Ashikawa, 2010, Acta crystallographica. Section F, Structural biology and crystallization communications.

J. Gen. Appl. Microbiol., 57, 277‒284 (2011)

H. Nojiri, H. Yamane, T. Takemura, 2011 .

Isolation and Characterization of Low-indole-3-acetic Acid-producing Mutants from Bradyrhizobium elkanii

M. Nishiyama, K. Minamisawa, T. Omori, 2000, Bioscience, biotechnology, and biochemistry.

Molecular Bases of Aerobic Bacterial Degradation of Involvement of Angular Dioxygenation Dioxins : JW

H. Nojiri, Toshio OMoRit, 2017 .

Rhizospheric plant-microbe synergistic interactions achieve efficient arsenic phytoextraction by Pteris vittata.

C. Inoue, Yu-Liang Yang, Chongyang Yang, 2022, Journal of hazardous materials.

Purification and Identification of Naringenin 7-O-Methyltransferase, a Key Enzyme in Biosynthesis of Flavonoid Phytoalexin Sakuranetin in Rice*

K. Okada, Takafumi Shimizu, H. Nojiri, 2012, The Journal of Biological Chemistry.

Purification and partial characterization of the extradiol dioxygenase, 2′-carboxy-2,3-dihydroxybiphenyl 1,2-dioxygenase, in the fluorene degradation pathway from Rhodococcus sp. strain DFA3

K. Iwata, K. Okada, H. Nojiri, 2016, Bioscience, biotechnology, and biochemistry.

Genes of enzymes involved in the biodegradation of carbazole, dibenzofuran, fluorene, and dibenzo-p-dioxin by bacteria

T. Omori, H. Nojiri, H. Yamane, 1997 .

The fluorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the beta-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria.

T. Omori, H. Habe, H. Nojiri, 2005, Microbiology.

Cloning and characterization of the genes involved in the degradation of dibenzofuran by Terrabacter sp. strain DBF63

T. Omori, T. Kodama, H. Nojiri, 1997 .

Effects of Three Different Nucleoid-Associated Proteins Encoded on IncP-7 Plasmid pCAR1 on Host Pseudomonas putida KT2440

K. Okada, M. Shintani, Kazuhiro Matsui, 2015, Applied and Environmental Microbiology.

The ptsP gene encoding the PTS family protein EI(Ntr) is essential for dimethyl sulfone utilization by Pseudomonas putida.

A. Kouzuma, T. Omori, H. Habe, 2007, FEMS microbiology letters.

Purification and Characterization of Carbazole 1 , 9 a-Dioxygenase , a Three-Component Dioxygenase System of Pseudomonas resinovorans Strain CA 10

T. Omori, H. Habe, H. Nojiri, 2002 .

Crystallization and preliminary X-ray diffraction studies of a novel ferredoxin involved in the dioxygenation of carbazole by Novosphingobium sp. KA1.

Z. Fujimoto, Kengo Inoue, Y. Ashikawa, 2008, Acta crystallographica. Section F, Structural biology and crystallization communications.

Crystallization and preliminary crystallographic analysis of the ferredoxin component of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177.

Z. Fujimoto, Kengo Inoue, Y. Ashikawa, 2007, Acta crystallographica. Section F, Structural biology and crystallization communications.

Crystallization and preliminary X-ray diffraction studies of the ferredoxin reductase component in the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.

Z. Fujimoto, Kengo Inoue, Y. Ashikawa, 2007, Acta crystallographica. Section F, Structural biology and crystallization communications.

Crystallization and preliminary X-ray diffraction studies of the terminal oxygenase component of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177.

Z. Fujimoto, Kengo Inoue, Y. Ashikawa, 2006, Acta crystallographica. Section F, Structural biology and crystallization communications.

Crystallization and preliminary X-ray diffraction analysis of the electron-transfer complex between the terminal oxygenase component and ferredoxin in the Rieske non-haem iron oxygenase system carbazole 1,9a-dioxygenase.

Z. Fujimoto, Y. Ashikawa, T. Omori, 2005, Acta crystallographica. Section F, Structural biology and crystallization communications.

Crystallization and preliminary crystallographic analysis of the 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase from the carbazole-degrader Pseudomonas resinovorans strain CA10.

Z. Fujimoto, H. Mizuno, K. Iwata, 2004, Acta crystallographica. Section D, Biological crystallography.

Pmr, a Histone-Like Protein H1 (H-NS) Family Protein Encoded by the IncP-7 Plasmid pCAR1, Is a Key Global Regulator That Alters Host Function

H. Nishida, K. Naito, M. Shintani, 2010, Journal of bacteriology.

Preparation and Biological Activity of Molecular Probes to Identify and Analyze Jasmonic Acid-binding Proteins

M. Nishiyama, S. Yoshida, T. Asami, 2004, Bioscience, biotechnology, and biochemistry.

Improved conditions for the transformation by electroporation of the extracellular polysaccharide-producing methylotroph Methylobacillus sp.

T. Omori, H. Habe, H. Nojiri, 2001, Biotechnology Letters.

Transcription Factors CysB and SfnR Constitute the Hierarchical Regulatory System for the Sulfate Starvation Response in Pseudomonas putida

A. Kouzuma, T. Omori, H. Habe, 2008, Journal of bacteriology.

Transcriptional regulation of the sulfate-starvation-induced gene sfnA by a sigma54-dependent activator of Pseudomonas putida.

A. Kouzuma, T. Omori, H. Habe, 2007, Microbiology.

Lateral transfers lead to the birth of momilactone biosynthetic gene clusters in grass

L. Fan, Longbiao Guo, K. Okada, 2022, The Plant journal : for cell and molecular biology.

OsMYC2 mediates numerous defence-related transcriptional changes via jasmonic acid signalling in rice.

Satoshi Ogawa, K. Okada, H. Nojiri, 2017, Biochemical and biophysical research communications.

SECONDARY BIOACTIVE METABOLITE GENE CLUSTERS IDENTIFICATION OF ANTICANDIDA-PRODUCING Streptomyces Sp. GMR22 ISOLATED FROM WANAGAMA FOREST AS REVEALED BY GENOME MINING APPROACH

A. Hosoyama, N. Wijayanti, J. Widada, 2017 .

Molecular detection and diversity of polycyclic aromatic hydrocarbon-degrading bacteria isolated from geographically diverse sites

T. Omori, H. Habe, H. Nojiri, 2001, Applied Microbiology and Biotechnology.

Stemar‐13‐ene synthase, a diterpene cyclase involved in the biosynthesis of the phytoalexin oryzalexin S in rice

M. Nishiyama, T. Toyomasu, W. Mitsuhashi, 2004, FEBS letters.

Molecular cloning and characterization of a cDNA encoding ent-cassa-12,15-diene synthase, a putative diterpenoid phytoalexin biosynthetic enzyme, from suspension-cultured rice cells treated with a chitin elicitor.

M. Nishiyama, T. Toyomasu, T. Omori, 2004, The Plant journal : for cell and molecular biology.

Complete Genome Sequence of Bacillus licheniformis TAB7, a Compost-Deodorizing Strain with Potential for Plant Growth Promotion

M. Nakajima, Y. Ohtsubo, M. Tsuda, 2019, Microbiology Resource Announcements.

Effects of environmental factors and coexisting substrates on PAH degradation and transcriptomic responses of the defined bacterial consortium OPK.

O. Pinyakong, M. Shintani, H. Nojiri, 2021, Environmental pollution.

In planta functions of cytochrome P450 monooxygenase genes in the phytocassane biosynthetic gene cluster on rice chromosome 2

H. Kawaide, K. Okada, H. Nojiri, 2018, Bioscience, biotechnology, and biochemistry.

Evolutionary trajectory of phytoalexin biosynthetic gene clusters in rice.

H. Kawaide, T. Toyomasu, W. Mitsuhashi, 2016, The Plant journal : for cell and molecular biology.

Effects of a bile acid elicitor, cholic acid, on the biosynthesis of diterpenoid phytoalexins in suspension-cultured rice cells.

K. Umemura, E. Minami, K. Okada, 2008, Phytochemistry.

Identification of a Biosynthetic Gene Cluster in Rice for Momilactones*

Kazunori Okada, Osamu Kodama, Atsushi Okada, 2007, Journal of Biological Chemistry.

Elicitor induced activation of the methylerythritol phosphate pathway toward phytoalexins biosynthesis in rice

T. Kuzuyama, K. Okada, Takafumi Shimizu, 2007, Plant Molecular Biology.

The potential bioproduction of the pharmaceutical agent sakuranetin, a flavonoid phytoalexin in rice

Kazunori Okada, K. Okada, Takafumi Shimizu, 2012, Bioengineered.

Effects of cytokinin on production of diterpenoid phytoalexins in rice

K. Okada, H. Nojiri, H. Yamane, 2010 .

Genome-wide screening of genes associated with momilactone B sensitivity in the fission yeast Schizosaccharomyces pombe

Sheena C. Li, Charles Boone, J. Piotrowski, 2021, G3.

HpDTC1, a Stress-Inducible Bifunctional Diterpene Cyclase Involved in Momilactone Biosynthesis, Functions in Chemical Defence in the Moss Hypnum plumaeforme

H. Kawaide, Ken-ichiro Hayashi, H. Nozaki, 2016, Scientific Reports.

Identification of Target Genes of the bZIP Transcription Factor OsTGAP1, Whose Overexpression Causes Elicitor-Induced Hyperaccumulation of Diterpenoid Phytoalexins in Rice Cells

H. Yoshikawa, T. Chujo, K. Okada, 2014, PloS one.

OsTGAP1 is responsible for JA-inducible diterpenoid phytoalexin biosynthesis in rice roots with biological impacts on allelopathic interaction.

Y. Nishizawa, E. Minami, K. Okada, 2017, Physiologia plantarum.

Synergistic degradation of pyrene by five culturable bacteria in a mangrove sediment-derived bacterial consortium.

Kengo Inoue, O. Pinyakong, M. Shintani, 2018, Journal of hazardous materials.

Carbazole Metabolism by Pseudomonads

T. Omori, H. Nojiri, 2007 .

Functional and transcriptional analyses of the initial oxygenase genes for acenaphthene degradation from Sphingomonas sp. strain A4.

A. Kouzuma, O. Pinyakong, T. Omori, 2006, Microbiology.

Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2.

O. Pinyakong, T. Omori, H. Habe, 2003, Biochemical and biophysical research communications.

Physiological changes in Rhodococcus ruber S103 immobilized on biobooms using low-cost media enhance stress tolerance and crude oil-degrading activity

O. Pinyakong, H. Nojiri, Nichakorn Khondee, 2022, Scientific Reports.

Catabolic Plasmids Involved in the Degradation of Polycyclic Aromatic Hydrocarbons and Heteroaromatic Compounds

M. Shintani, H. Nojiri, Masahiro Sota, 2009 .

Characterization of Novel Carbazole Catabolism Genes from Gram-Positive Carbazole Degrader Nocardioides aromaticivorans IC177

Kengo Inoue, H. Habe, H. Nojiri, 2006, Applied and Environmental Microbiology.

Isolation and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase from acenaphthene and acenaphthylene degrading Sphingomonas sp. strain A4.

A. Kouzuma, O. Pinyakong, T. Omori, 2004, FEMS microbiology letters.

Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity

T. Omori, M. Shintani, H. Nojiri, 2004, Applied Microbiology and Biotechnology.

Identification of novel metabolites in the degradation of phenanthrene by Sphingomonas sp. strain P2.

O. Pinyakong, T. Omori, H. Habe, 2000, FEMS microbiology letters.

Mobile Genetic Elements (MGEs) Carrying Catabolic Genes

M. Shintani, H. Nojiri, 2013 .

Structural and Molecular Genetic Analyses of the Bacterial Carbazole Degradation System

H. Nojiri, 2012, Bioscience, biotechnology, and biochemistry.

Characterization of the Replication, Maintenance, and Transfer Features of the IncP-7 Plasmid pCAR1, Which Carries Genes Involved in Carbazole and Dioxin Degradation

H. Yano, T. Omori, H. Habe, 2006, Applied and Environmental Microbiology.

Isolation and characterization of an alkaliphilic bacterium utilizing pyrene as a carbon source.

K. Iwata, T. Omori, H. Habe, 2004, Journal of bioscience and bioengineering.

Genetic evidence for the role of isopentenyl diphosphate isomerases in the mevalonate pathway and plant development in Arabidopsis.

H. Kawaide, Y. Kamiya, Shinjiro Yamaguchi, 2008, Plant & cell physiology.

Oxidation of chlorinated olefins by Escherichia coli transformed with dimethyl sulfide monooxygenase genes or cumene dioxygenase genes.

T. Omori, H. Nojiri, H. Yamane, 1999, The Journal of general and applied microbiology.

Electron transfer complex formation between oxygenase and ferredoxin components in Rieske nonheme iron oxygenase system.

Z. Fujimoto, Y. Ashikawa, T. Omori, 2006, Structure.

Cloning and characterization of genes encoding an enzyme which oxidizes dimethyl sulfide in Acinetobacter sp. strain 20B.

T. Omori, H. Nojiri, H. Yamane, 1997, FEMS microbiology letters.

The α- and β-Subunit Boundary at the Stem of the Mushroom-Like α3β3-Type Oxygenase Component of Rieske Non-Heme Iron Oxygenases Is the Rieske-Type Ferredoxin-Binding Site

T. Terada, K. Okada, H. Nojiri, 2022, Applied and environmental microbiology.

Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Nonheme Iron Oxygenase Carbazole 1,9a-Dioxygenase

Shugo Nakamura, T. Terada, K. Shimizu, 2014, Applied and Environmental Microbiology.

Structure of the terminal oxygenase component of angular dioxygenase, carbazole 1,9a-dioxygenase.

Shugo Nakamura, T. Terada, K. Shimizu, 2005, Journal of molecular biology.

Crystal Structure of the Terminal Oxygenase Component of Cumene Dioxygenase from Pseudomonas fluorescens IP01

E. Fukuda, Shugo Nakamura, T. Terada, 2005, Journal of bacteriology.

Qualitative and Quantitative Analysis of Endogenous Jasmonic Acid in Bulbing and Non-Bulbing Onion Plants

I. Yamaguchi, N. Murofushi, H. Seto, 1992 .

Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice.

M. Yasuda, Y. Nagamura, H. Nakashita, 2007, Biochimica et biophysica acta.

Involvement of the Basic Helix-Loop-Helix Transcription Factor RERJ1 in Wounding and Drought Stress Responses in Rice Plants

E. Minami, K. Okada, H. Seto, 2005, Bioscience, biotechnology, and biochemistry.

Alteration of the Substrate Specificity of the Angular Dioxygenase Carbazole 1,9a-Dioxygenase

Shugo Nakamura, T. Terada, K. Shimizu, 2008, Bioscience, biotechnology, and biochemistry.

Genes involved in the synthesis of the exopolysaccharide methanolan by the obligate methylotroph Methylobacillus sp strain 12S.

T. Omori, H. Habe, H. Nojiri, 2003, Microbiology.

Expression, Purification, and Characterization of 2′-Aminobiphenyl-2,3-diol 1,2-dioxygenase from Carbazole-degrader Pseudomonas resinovorans Strain CA10

K. Shimizu, K. Iwata, T. Omori, 2002, Bioscience, biotechnology, and biochemistry.

Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo-p-dioxins in soil.

Y. Ashikawa, T. Omori, H. Habe, 2002, FEMS microbiology letters.

New Classification System for Oxygenase in Ring-Hydroxylating Oxygenations Components Involved

H. Habe, H. Nojiri, J. Nam, 2018 .

Purification and Characterization of meta-Cleavage Compound Hydrolase from a Carbazole Degrader Pseudomonas resinovorans Strain CA10

Shugo Nakamura, K. Shimizu, K. Iwata, 2003, Bioscience, biotechnology, and biochemistry.

Crystal structures of a meta‐cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products

Masafumi Hidaka, T. Omori, T. Saku, 2002, Protein science : a publication of the Protein Society.

Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01

T. Omori, H. Habe, H. Nojiri, 1996, Applied and environmental microbiology.

Cloning of dfdA genes from Terrabacter sp. strain DBF63 encoding dibenzofuran 4,4a-dioxygenase and heterologous expression in Streptomyces lividans

T. Omori, H. Habe, H. Nojiri, 2012, Applied Microbiology and Biotechnology.

Specific Interactions between the ferredoxin and terminal oxygenase components of a class IIB Rieske nonheme iron oxygenase, carbazole 1,9a-dioxygenase.

T. Terada, Z. Fujimoto, Kengo Inoue, 2009, Journal of molecular biology.

Detailed comparison between the substrate specificities of two angular dioxygenases, dibenzofuran 4,4a-dioxygenase from Terrabacter sp. and carbazole 1,9a-dioxygenase from Pseudomonas resinovorans

Terufumi Takagi, T. Omori, H. Habe, 2002, Biotechnology Letters.

Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63.

T. Omori, H. Habe, J. Chung, 2001, Biochemical and biophysical research communications.

OsMYC2, an essential factor for JA-inductive sakuranetin production in rice, interacts with MYC2-like proteins that enhance its transactivation ability

T. Sawasaki, Satoshi Ogawa, K. Okada, 2017, Scientific Reports.

Evidence for the Presence of DNA-Binding Proteins Involved in Regulation of the Gene Expression of Indole-3-Pyruvic Acid Decarboxylase, a Key Enzyme in Indole-3-Acetic Acid Biosynthesis in Azospirillum lipoferum FS

M. Nishiyama, T. Omori, H. Nojiri, 2001, Bioscience, biotechnology, and biochemistry.

Light Response of Pseudomonas putida KT2440 Mediated by Class II LitR, a Photosensor Homolog

K. Ueda, H. Takano, M. Shintani, 2020, Journal of Bacteriology.

The rice wound-inducible transcription factor RERJ1 sharing same signal transduction pathway with OsMYC2 is necessary for defense response to herbivory and bacterial blight

T. Sawasaki, A. Miyao, J. Takabayashi, 2021, Plant Molecular Biology.

Overexpression of Phosphomimic Mutated OsWRKY53 Leads to Enhanced Blast Resistance in Rice

Satoshi Ogawa, Y. Nishizawa, E. Minami, 2014, PloS one.

Biotransformation of Monocyclic Phenolic Compounds by Bacillus licheniformis TAB7

Enock Mpofu, K. Okada, H. Nojiri, 2019, Microorganisms.

RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein.

Kazunori Okada, Makoto Nishiyama, Takashi Otani, 2004, Biochemical and Biophysical Research Communications - BBRC.

Biochemical synthesis of uniformly 13C-labeled diterpene hydrocarbons and their bioconversion to diterpenoid phytoalexins in planta

H. Kawaide, K. Okada, H. Nojiri, 2017, Bioscience, biotechnology, and biochemistry.

Promoter Analysis of the Elicitor-Induced WRKY Gene OsWRKY53, Which Is Involved in Defense Responses in Rice

Nahoko Sugioka, K. Okada, N. Shibuya, 2009, Bioscience, biotechnology, and biochemistry.

Characterization of bacterial community structure in a hydrocarbon-contaminated tropical African soil

M. O. Ilori, O. Amund, H. Nojiri, 2018, Environmental technology.

DNA rearrangement has occurred in the carbazole-degradative plasmid pCAR1 and the chromosome of its unsuitable host, Pseudomonas fluorescens Pf0-1.

H. Yoshikawa, M. Ohkuma, M. Shintani, 2011, Microbiology.

Nucleoid-associated proteins encoded on plasmids: Occurrence and mode of function.

M. Shintani, H. Nojiri, C. Suzuki-Minakuchi, 2015, Plasmid.

A Novel Small RNA on the Pseudomonas putida KT2440 Chromosome Is Involved in the Fitness Cost Imposed by IncP-1 Plasmid RP4

D. Sugiyama, K. Okada, H. Nojiri, 2020, Frontiers in Microbiology.

Conjugative Elements: Host Chromosome Function Modifiers

M. Shintani, H. Nojiri, Yurika Takahashi, 2014 .

Impact of catabolic plasmids on host cell physiology.

H. Nojiri, 2013, Current opinion in biotechnology.

Evolutionary Mechanisms of Microbial Genomes 2012

S. Kondo, K. Noma, H. Nishida, 2012, International journal of evolutionary biology.

Thermophilic bacteria are potential sources of novel Rieske non-heme iron oxygenases

K. Okada, H. Nojiri, C. Suzuki-Minakuchi, 2017, AMB Express.

Divalent cations increase the conjugation efficiency of the incompatibility P-7 group plasmid pCAR1 among different Pseudomonas hosts.

K. Okada, M. Shintani, Kazuhiro Matsui, 2018, Microbiology.

Transcriptional Regulation of the ant Operon, Encoding Two-Component Anthranilate 1,2-Dioxygenase, on the Carbazole-Degradative Plasmid pCAR1 of Pseudomonas resinovorans Strain CA10

T. Omori, H. Habe, H. Nojiri, 2004, Journal of bacteriology.

Horizontal Transfers Lead to the Birth of Momilactone Biosynthetic Gene Clusters in Grass

L. Fan, K. Okada, Chuyu Ye, 2022, bioRxiv.

The behavior and significance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms.

Masaki Shintani, Yurika Takahashi, M. Shintani, 2010, Microbes and environments.

Carbazole-Degradative IncP-7 Plasmid pCAR1.2 Is Structurally Unstable in Pseudomonas fluorescens Pf0-1, Which Accumulates Catechol, the Intermediate of the Carbazole Degradation Pathway

Li Li, M. Shintani, H. Nojiri, 2009, Applied and Environmental Microbiology.

A Series of Crystal Structures of a meta-Cleavage Product Hydrolase from Pseudomonas fluorescens IP01 (CumD) Complexed with Various Cleavage Products

Masafumi Hidaka, T. Omori, S. Fushinobu, 2005, Bioscience, biotechnology, and biochemistry.

H-NS Family Proteins Drastically Change Their Targets in Response to the Horizontal Transfer of the Catabolic Plasmid pCAR1

Y. Kanesaki, S. Kawasaki, K. Okada, 2020, Frontiers in Microbiology.

Oligomerization Mechanisms of an H-NS Family Protein, Pmr, Encoded on the Plasmid pCAR1 Provide a Molecular Basis for Functions of H-NS Family Members

T. Terada, M. Tanokura, K. Okada, 2014, PloS one.

Distribution of Genes Encoding Nucleoid-Associated Protein Homologs in Plasmids

M. Shintani, H. Nojiri, H. Yamane, 2011, International journal of evolutionary biology.

Structural insight into the substrate- and dioxygen-binding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9a-dioxygenase

Z. Fujimoto, Kengo Inoue, Y. Ashikawa, 2012, BMC Structural Biology.

Inhibition of Pseudomonas aeruginosa Swarming Motility by 1-Naphthol and Other Bicyclic Compounds Bearing Hydroxyl Groups

H. Uchiyama, Seunguk Lee, M. Toyofuku, 2015, Applied and Environmental Microbiology.

Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice

Y. Nishizawa, E. Minami, K. Okada, 2013, Protoplasma.

Identification of an E-box motif responsible for the expression of jasmonic acid-induced chitinase gene OsChia4a in rice.

G. Lomonossoff, K. Okada, Takafumi Shimizu, 2012, Journal of plant physiology.

Qualitative and Quantitative Analysis of Endogenous Gibberellins in Onion Plants and Their Effects on Bulb Development

T. Toyomasu, N. Murofushi, H. Nojiri, 1993 .

Carbazole angular dioxygenation and mineralization by bacteria isolated from hydrocarbon-contaminated tropical African soil

M. Ilori, O. Amund, H. Nojiri, 2014, Environmental Science and Pollution Research.

Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676.

T. Omori, H. Habe, M. Shintani, 2003, Journal of molecular biology.

Crystal structure of the ferredoxin component of carbazole 1,9a‐dioxygenase of Pseudomonas resinovorans strain CA10, a novel Rieske non‐heme iron oxygenase system

Z. Fujimoto, H. Mizuno, Y. Ashikawa, 2005, Proteins.

Ecological impact assessment of a bioaugmentation site on remediation of chlorinated ethylenes by multi-omics analysis.

M. Fukuda, D. Kasai, N. Noda, 2019, The Journal of general and applied microbiology.

A Novel Gene Cluster Is Involved in the Degradation of Lignin-Derived Monoaromatics in Thermus oshimai JL-2

K. Okada, H. Nojiri, C. Suzuki-Minakuchi, 2021, Applied and Environmental Microbiology.

Functional Identification of a Rice ent-Kaurene Oxidase, OsKO2, Using the Pichia pastoris Expression System

H. Kawaide, K. Okada, H. Nojiri, 2008, Bioscience, biotechnology, and biochemistry.

Degradation of trichloroethylene by recombinant E. coli in continuous culture

T. Omori, H. Nojiri, H. Yamane, 2000, Biotechnology Letters.

Deciphering OPDA Signaling Components in the Momilactone-Producing Moss Calohypnum plumiforme

T. Sawasaki, I. Galis, K. Okada, 2021, Frontiers in Plant Science.

Diversity of Nonribosomal Peptide Synthetase Genes in the AnticancerProducing Actinomycetes Isolated from Marine Sediment in Indonesia

A. Hosoyama, N. Wijayanti, J. Widada, 2016 .

Complete Genome Sequence of the Carbazole Degrader Pseudomonas resinovorans Strain CA10 (NBRC 106553)

A. Hosoyama, N. Fujita, M. Shintani, 2013, Genome Announcements.

Transcriptional mechanisms for differential expression of outer membrane cytochrome genes omcA and mtrC in Shewanella oneidensis MR-1

Kazuya Watanabe, A. Kouzuma, T. Kasai, 2015, BMC Microbiology.

Genetic characterization of the dibenzofuran-degrading Actinobacteria carrying the dbfA1A2 gene homologues isolated from activated sludge.

T. Omori, H. Habe, J. Widada, 2004, FEMS Microbiology Letters.

Characterization of [3Fe-4S] ferredoxin DbfA3, which functions in the angular dioxygenase system of Terrabacter sp. strain DBF63

Terufumi Takagi, T. Omori, H. Habe, 2005, Applied Microbiology and Biotechnology.

Characterization of the Upper Pathway Genes for Fluorene Metabolism in Terrabacter sp. Strain DBF63

T. Omori, H. Habe, H. Nojiri, 2004, Journal of bacteriology.

Degradation characteristics of a dibenzofuran-degrader Terrabacter sp. strain DBF63 toward chlorinated dioxins in soil.

T. Omori, H. Habe, H. Tsuji, 2002, Chemosphere.

Azoxystrobin amine: A novel azoxystrobin degradation product from Bacillus licheniformis strain TAB7.

Enock Mpofu, M. Maloň, K. Okada, 2021, Chemosphere.

High-resolution mapping of plasmid transcriptomes in different host bacteria

Masaki Shintani, Hiromi Nishida, H. Nishida, 2009, BMC Genomics.

Incorporation of Plasmid DNA Into Bacterial Membrane Vesicles by Peptidoglycan Defects in Escherichia coli

M. Shintani, H. Nojiri, Y. Tashiro, 2021, Frontiers in Microbiology.

OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus

Y. Nishizawa, E. Minami, K. Okada, 2013, Plant Molecular Biology.

Characterization of an Elicitor-Induced Rice WRKY Gene, OsWRKY71

M. Yasuda, Y. Nagamura, H. Nakashita, 2008, Bioscience, biotechnology, and biochemistry.

Complete Genome Sequence of Thalassococcus sp. Strain S3, a Marine Roseobacter Clade Member Capable of Degrading Carbazole

Y. Ohtsubo, M. Tsuda, K. Okada, 2019, Microbiology Resource Announcements.

Improving the catalytic efficiency of a meta-cleavage product hydrolase (CumD) from Pseudomonas fluorescens IP01.

T. Omori, S. Fushinobu, T. Wakagi, 2006, Biochimica et biophysica acta.

Subtractive hybridization and random arbitrarily primed PCR analyses of a benzoate-assimilating bacterium, Desulfotignum balticum

Kazuya Watanabe, A. Kouzuma, T. Omori, 2008, Applied Microbiology and Biotechnology.

Crystal structure of a histidine-tagged serine hydrolase involved in the carbazole degradation (CarC enzyme).

Hiroshi Habe, T. Omori, H. Habe, 2003, Biochemical and biophysical research communications.

Fluviispira sanaruensis sp., nov., Isolated from a Brackish Lake in Hamamatsu, Japan

H. Dohra, M. Ohkuma, K. Kimbara, 2021, Current Microbiology.

The Relationship between Levels of Endogenous Gibberellins and the Response of Vigna Hypocotyls to Exogenous Indole-3-Acetic Acid

N. Murofushi, H. Nojiri, H. Okamoto, 1995 .

Oxidation of dimethyl sulfide by various aromatic compound oxygenases from bacteria

T. Omori, H. Nojiri, H. Yamane, 1999, Biotechnology Letters.

Complete Genome Sequence of a Dimethyl Sulfide-Utilizing Bacterium, Acinetobacter guillouiae Strain 20B (NBRC 110550)

A. Hosoyama, Jun Shimodaira, N. Fujita, 2014, Genome Announcements.

Differentiation of Carbazole Catabolic Operons by Replacement of the Regulated Promoter via Transposition of an Insertion Sequence*

T. Omori, H. Habe, H. Nojiri, 2006, Journal of Biological Chemistry.

MvaT Family Proteins Encoded on IncP-7 Plasmid pCAR1 and the Host Chromosome Regulate the Host Transcriptome Cooperatively but Differently

K. Okada, M. Shintani, H. Nojiri, 2015, Applied and Environmental Microbiology.

Low-cost gel-filled microwell array device for screening marine microbial consortium

Chongyang Yang, R. Duran, F. Sassa, 2022, Frontiers in Microbiology.

Oxygen concentration affects frequency and range of transconjugants for the incompatibility (Inc) P-1 and P-7 plasmids pBP136 and pCAR1.

M. Ohkuma, K. Kimbara, M. Shintani, 2020, Bioscience, biotechnology, and biochemistry.

Biodegradative Bacteria How Bacteria Degrade, Survive, Adapt, and Evolve

Y. Kamagata, M. Fukuda, M. Tsuda, 2014 .

Membrane Topology and Functional Analysis of Methylobacillus sp. 12S Genes epsF and epsG, Encoding Polysaccharide Chain-Length Determining Proteins

T. Omori, H. Nojiri, Yusuke Usami, 2012, Bioscience, biotechnology, and biochemistry.

The Complete Nucleotide Sequence of pCAR2: pCAR2 and pCAR1 Were Structurally Identical IncP-7 Carbazole Degradative Plasmids

M. Shintani, H. Nojiri, H. Yamane, 2009, Bioscience, biotechnology, and biochemistry.

Recipient Range of IncP-7 Conjugative Plasmid pCAR2 from Pseudomonas putida HS01 is Broader than from Other Pseudomonas Strains

T. Omori, H. Habe, M. Tsuda, 2005, Biotechnology Letters.

Transcriptional mechanisms for differential expression of outer membrane cytochrome genes omcA and mtrC in Shewanella oneidensis MR-1

Kazuya Watanabe, A. Kouzuma, T. Kasai, 2015, BMC Microbiology.

Complete Genome Sequence of an Anaerobic Benzene-Degrading Bacterium, Azoarcus sp. Strain DN11

Y. Kasai, Y. Ohtsubo, M. Tsuda, 2019, Microbiology Resource Announcements.

Conjugative transfer of the IncP-7 carbazole degradative plasmid, pCAR1, in river water samples

M. Shintani, H. Nojiri, H. Yamane, 2007, Biotechnology Letters.

Bioremediation, a broad perspective

T. Wood, J. R. van der Meer, P. van Dillewijn, 2009, Microbial biotechnology.

Draft Genome Sequence of the Marine-Derived, Anticancer Compound-Producing Bacterium Streptomyces sp. Strain GMY01

Mustofa, A. Hosoyama, N. Wijayanti, 2023, Microbiology Resource Announcements.

Cloning of dfdA genes from Terrabacter sp. strain DBF63 encoding dibenzofuran 4,4a-dioxygenase and heterologous expression in Streptomyces lividans

T. Omori, H. Habe, H. Nojiri, 2013, Applied Microbiology and Biotechnology.

Differential protein-protein binding affinities of H-NS family proteins encoded on the chromosome of Pseudomonas putida KT2440 and IncP-7 plasmid pCAR1

Y. Igarashi, Zongping Sun, K. Okada, 2018, Bioscience, biotechnology, and biochemistry.

Proteome and acylome analyses of the functional interaction network between the carbazole‐degradative plasmid pCAR1 and host Pseudomonas putida KT2440

Minoru Yoshida, S. Kosono, K. Okada, 2018, Environmental microbiology reports.

Ecological impact assessment of a bioaugmentation site on remediation of chlorinated ethylenes by multi-omics analysis.

M. Fukuda, D. Kasai, N. Noda, 2019, The Journal of general and applied microbiology.

Identification of an E-box motif responsible for the expression of jasmonic acid-induced chitinase gene OsChia4a in rice.

G. Lomonossoff, K. Okada, Takafumi Shimizu, 2012, Journal of plant physiology.

Single-Cell Analyses Revealed Transfer Ranges of IncP-1, IncP-7, and IncP-9 Plasmids in a Soil Bacterial Community

A. Hosoyama, M. Ohkuma, K. Kimbara, 2013, Applied and Environmental Microbiology.

Thermophilic bacteria are potential sources of novel Rieske non-heme iron oxygenases

K. Okada, H. Nojiri, C. Suzuki-Minakuchi, 2017, AMB Express.

Qualitative and Quantitative Analysis of Endogenous Gibberellins in Raphanus sativus L. during Cold Treatment and the Subsequent Growth

I. Yamaguchi, T. Yokota, N. Takahashi, 1995 .

Conjugative Selectivity of Plasmids Is Affected by Coexisting Recipient Candidates

K. Okada, H. Nojiri, C. Suzuki-Minakuchi, 2018, mSphere.

Biological roles of the rice bHLH factor RERJ1 on stress responses via jasmonate signaling

K. Okada, Takafumi Shimizu, H. Nojiri, 2017 .

Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice

Y. Nishizawa, E. Minami, K. Okada, 2012, Protoplasma.

Cloning and characterization of a jasmonic acid-responsive gene encoding 12-oxophytodienoic acid reductase in suspension-cultured rice cells

M. Nishiyama, H. Nishida, E. Weiler, 2003, Planta.

Cloning and Characterization of cDNAs for the Jasmonic Acid-responsive Genes RRJ1 and RRJ2 in Suspension-cultured Rice Cells

M. Nishiyama, T. Omori, E. Minami, 2002, Bioscience, biotechnology, and biochemistry.