A. Apprill

发表

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

William A. Walters, R. Knight, J. Gilbert, 2015, mSystems.

Marine Animal Microbiomes: Toward Understanding Host–Microbiome Interactions in a Changing Ocean

Amy Apprill, A. Apprill, 2017, Front. Mar. Sci..

Extensive Core Microbiome in Drone-Captured Whale Blow Supports a Framework for Health Monitoring

Lance G. Barrett-Lennard, Amy Apprill, Carolyn A. Miller, 2017, mSystems.

Host-specificity among abundant and rare taxa in the sponge microbiome

Ann Vanreusel, Amy Apprill, A Murat Eren, 2014, The ISME Journal.

Microbial signatures of protected and impacted Northern Caribbean reefs: changes from Cuba to the Florida Keys

M. Armenteros, A. Santoro, E. Bartels, 2019, Environmental microbiology.

Coordinated transformation of the gut microbiome and lipidome of bowhead whales provides novel insights into digestion

Carolyn A. Miller, J. George, B. V. Van Mooy, 2019, The ISME Journal.

Dark Production of Extracellular Superoxide by the Coral Porites astreoides and Representative Symbionts

R. Parsons, C. Hansel, A. Apprill, 2016, Front. Mar. Sci..

Photosynthetic Pigmentation And Diversity Of Symbiotic Dinoflagellates In Lobate Porites Sp. Corals

A. Apprill, 2004 .

The influence of shelf processes in delivering dissolved iron to the HNLC waters of the Drake Passage, Antarctica

Meng Zhou, M. Hatta, W. T. Hiscock, 2013 .

Phytoplankton distributions in the Shackleton Fracture Zone/Elephant Island region of the Drake Passage in February–March 2004

M. Hatta, W. T. Hiscock, C. Measures, 2013 .

Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts

Craig T. Michell, C. Voolstra, A. Apprill, 2017, Scientific Reports.

Impact of prawn farming effluent on coral reef water nutrients and microorganisms

K. Hughen, T. Mincer, J. Ossolinski, 2017 .

The coral ecosphere: A unique coral reef habitat that fosters coral–microbial interactions

M. Armenteros, A. Apprill, L. Weber, 2019, Limnology and Oceanography.

Diel, daily, and spatial variation of coral reef seawater microbial communities

A. Apprill, L. Weber, 2019, PloS one.

Habitat and Client Diversity Influence the Skin Microbiome of the Caribbean Cleaner Goby Elacatinus Evelynae

Teresa P Santos, M. Pérez‐Losada, M. Soares, 2021 .

Crystallographic and chemical signatures in coral skeletal aragonite

R. Waller, A. Cohen, T. DeCarlo, 2021, Coral Reefs.

Ground-truthing daily and lunar patterns of coral reef fish call rates on a U.S. Virgin Island reef

T. Mooney, A. Apprill, SR Ferguson, 2022, Aquatic Biology.

Recognizing diversity in coral symbiotic dinoflagellate communities

R. Gates, A. Apprill, 2007, Molecular ecology.

A meta-analysis of the stony coral tissue loss disease microbiome finds key bacteria in lesions and unaffected tissue of diseased colonies

James S. Evans, M. Medina, J. del Campo, 2022, bioRxiv.

Title : A meta-analysis of the stony coral tissue loss disease microbiome finds 1 key bacteria in lesions and unaffected tissue of diseased colonies 2 Running title : SCTLD microbiome meta-analysis 3

James S. Evans, Julie L. Meyer, C. Kellogg, 2022 .

Whole-Genome Sequences of Three Symbiotic Endozoicomonas Bacteria

Craig T. Michell, C. Voolstra, A. Apprill, 2014, Genome Announcements.

Speciﬁcity of Associations between Bacteria and the Coral Pocillopora meandrina during Early Development

M. Martindale, Heather Q. Marlow, A. Apprill, 2012 .

Coral reef fish assemblages exhibit signs of depletion in two protected areas from the eastern of Los Canarreos archipelago (Cuba, Caribbean Sea)

M. Armenteros, A. Apprill, P. González‐Díaz, 2022, PeerJ.

Reshuffling of the Coral Microbiome during Dormancy

K. Sharp, A. Apprill, Anya L. Brown, 2022, bioRxiv.

Benthic exometabolites and their ecological significance on threatened Caribbean coral reefs

E. Kujawinski, K. Longnecker, A. Apprill, 2022, ISME Communications.

On-site sequencing speeds up and re-directs field-based microbiology.

A. Apprill, 2019, Environmental microbiology reports.

Optimization of DNA extraction for advancing coral microbiota investigations

A. Apprill, L. Weber, Emelia Deforce, 2017, Microbiome.

Experimental transmission of Stony Coral Tissue Loss Disease results in differential microbial responses within coral mucus and tissue

Carolyn A. Miller, D. Holstein, T. Smith, 2022, ISME Communications.

1 Temporal and regional variability in the skin microbiome of humpback 2 whales along the Western Antarctic Peninsula 3

Carolyn A. Miller, A. Friedlaender, K. Bierlich, 2017 .

Genetic differentiation in the mountainous star coral Orbicella faveolata around Cuba

L. Bernatchez, D. Casane, Jessy Castellanos-Gell, 2018, Coral Reefs.

Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas

C. Voolstra, C. Ferrier‐Pagès, A. Apprill, 2016, Applied Microbiology and Biotechnology.

A communal catalogue reveals Earth’s multiscale microbial diversity

Rick L. Stevens, William A. Walters, Nicole M. Gaudelli, 2017, Nature.

Coupled X-ray Fluorescence and X-ray Absorption Spectroscopy for Microscale Imaging and Identification of Sulfur Species within Tissues and Skeletons of Scleractinian Corals.

C. Hansel, S. Webb, A. Apprill, 2018, Analytical chemistry.

Incidence of lesions on Fungiidae corals in the eastern Red Sea is related to water temperature and coastal pollution.

K. Hughen, J. Ossolinski, K. A. Furby, 2014, Marine environmental research.

Microbial Communities of Red Sea Coral Reefs

S. Miyake, G. Aeby, C. Voolstra, 2019, Coral Reefs of the Red Sea.

Coral microbiome database: Integration of sequences reveals high diversity and relatedness of coral‐associated microbes

M. Huggett, A. Apprill, 2018, Environmental microbiology reports.

Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales

D. Bourne, Craig T. Michell, C. Voolstra, 2016, The ISME Journal.

Distinguishing between Microbial Habitats Unravels Ecological Complexity in Coral Microbiomes

A. Santoro, A. Apprill, L. Weber, 2016, mSystems.

Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas

C. Voolstra, C. Ferrier‐Pagès, A. Apprill, 2016, Applied Microbiology and Biotechnology.

Characterizing the culturable surface microbiomes of diverse marine animals

J. Robbins, Abigail G Keller, P. Lebaron, 2021, FEMS microbiology ecology.

The marine mammal microbiome: current knowledge and future directions

J. Mann, Mark V Brown, T. Rogers, 2015 .

Humpback Whale Populations Share a Core Skin Bacterial Community: Towards a Health Index for Marine Mammals?

A. M. Eren, J. Reveillaud, T. Mincer, 2014, PloS one.

Variable Species Responses to Experimental Stony Coral Tissue Loss Disease (SCTLD) Exposure

D. Holstein, T. Smith, L. Mydlarz, 2021, Frontiers in Marine Science.

Alphaflexivirus Genomes in Stony Coral Tissue Loss Disease-Affected, Disease-Exposed, and Disease-Unexposed Coral Colonies in the U.S. Virgin Islands

D. Holstein, T. Smith, L. Mydlarz, 2022, Microbiology resource announcements.

Development of a handheld submersible chemiluminescent sensor: Quantification of superoxide at coral surfaces.

M. Armenteros, S. Wankel, J. Kapit, 2019, Environmental science & technology.

Species-specific control of external superoxide levels by the coral holobiont during a natural bleaching event

C. Hansel, A. Apprill, L. Weber, 2016, Nature Communications.

Differential Patterns of Microbiota Recovery in Symbiotic and Aposymbiotic Corals following Antibiotic Disturbance

Carolyn A. Miller, K. Sharp, C. Hansel, 2021, mSystems.

The Role of Symbioses in the Adaptation and Stress Responses of Marine Organisms.

A. Apprill, 2020, Annual review of marine science.

Humpback whales harbour a combination of specific and variable skin bacteria.

A. Stimpert, T. Mooney, M. Rappé, 2011, Environmental microbiology reports.

Optimization of DNA extraction for advancing coral microbiota investigations

A. Apprill, L. Weber, Emelia Deforce, 2017, Microbiome.

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

R. Parsons, A. Apprill, L. Weber, 2015 .

Discovery and quantification of anaerobic nitrogen metabolisms among oxygenated tropical Cuban stony corals

M. Armenteros, S. Wankel, A. Apprill, 2020, The ISME journal.

Minor revision to V 4 region SSU rRNA 806 R gene primer greatly increases detection of SAR 11 bacterioplankton

R. Parsons, A. Apprill, L. Weber, 2015 .

Natural experiments and long-term monitoring are critical to understand and predict marine host–microbe ecology and evolution

J. Eisen, W. Wcislo, H. Bik, 2021, PLoS biology.

Microbial and nutrient dynamics in mangrove, reef, and seagrass waters over tidal and diurnal time scales

T. Mooney, J. Llopiz, A. Apprill, 2020 .

Specificity of Associations between Bacteria and the Coral Pocillopora meandrina during Early Development

M. Martindale, M. Rappé, A. Apprill, 2012, Applied and Environmental Microbiology.

Response of the microbial community to coral spawning in lagoon and reef flat environments of Hawaii, USA

M. Rappé, A. Apprill, 2011 .

The onset of microbial associations in the coral Pocillopora meandrina

M. Martindale, M. Rappé, A. Apprill, 2009, The ISME Journal.

Microbial ecology of coral-dominated reefs in the Federated States of Micronesia

K. Hughen, A. Santoro, G. Aeby, 2021 .

Stony Coral Tissue Loss Disease biomarker bacteria identified in corals and overlying waters using a rapid field-based sequencing approach

Carolyn A. Miller, A. Apprill, M. Brandt, 2021, bioRxiv.

K. Hughen, T. Mincer, A. Apprill, 2013, Environmental microbiology.

Skin microbiome of beluga whales: spatial, temporal, and health-related dynamics

P. Wade, R. Hobbs, C. Goertz, 2020, Animal microbiome.

Reef Location and Client Diversity Influence the Skin Microbiome of the Caribbean Cleaner Goby Elacatinus evelynae

M. Pérez‐Losada, M. Soares, A. Apprill, 2022, Microbial Ecology.

Marine mammal skin microbiotas are influenced by host phylogeny

R. W. Baird, Carolyn A. Miller, J. Robbins, 2020, Royal Society Open Science.

Extracellular Reef Metabolites Across the Protected Jardines de la Reina, Cuba Reef System

M. Armenteros, E. Kujawinski, Melissa C. Kido Soule, 2020, Frontiers in Marine Science.

Microbial bioindicators of Stony Coral Tissue Loss Disease identified in corals and overlying waters using a rapid field-based sequencing approach.

Carolyn A. Miller, A. Apprill, M. Brandt, 2021, Environmental microbiology.

Toward a New Era of Coral Reef Monitoring

Yogesh A. Girdhar, W. G. Zhang, K. Hughen, 2023, Environmental science & technology.

A meta-analysis of the stony coral tissue loss disease microbiome finds key bacteria in unaffected and lesion tissue in diseased colonies

James S. Evans, J. del Campo, Julie L. Meyer, 2023, ISME Communications.

Biogeography of reef water microbes from within reef to global scales

S. Sandin, B. Zgliczynski, C. Sullivan, 2022, Aquatic Microbial Ecology.

Temporal and Regional Variability in the Skin Microbiome of Humpback Whales along the Western Antarctic Peninsula

Carolyn A. Miller, K. C. Bierlich, A. Friedlaender, 2017, Applied and Environmental Microbiology.

Multifaceted impacts of the stony coral Porites astreoides on picoplankton abundance and community composition

R. Parsons, A. Santoro, A. Apprill, 2017 .

Soundscapes influence the settlement of the common Caribbean coral Porites astreoides irrespective of light conditions

T. Mooney, J. Llopiz, A. Apprill, 2018, Royal Society Open Science.

Spectral reflectance of coral

Serge Andréfouët, Eric J. Hochberg, Marlin J. Atkinson, 2004, Coral Reefs.

The Microbiome of the Red Sea Coral Stylophora pistillata Is Dominated by Tissue-Associated Endozoicomonas Bacteria

K. Hughen, M. Aranda, T. Mincer, 2013, Applied and Environmental Microbiology.

Visibly healthy corals exhibit variable pigment concentrations and symbiont phenotypes

R. Bidigare, R. Gates, A. Apprill, 2007, Coral Reefs.

Efficient light harvesting in deep-water zooxanthellate corals

R. Bidigare, S. Kahng, D. Wagner, 2012 .

Bacteriad Endozoicomonas Stylophora pistillata Is Dominated by The Microbiome of the Red Sea Coral

M. Aranda, T. Mincer, C. Voolstra, 2014 .

Bacteria Tissue-Associated Endozoicomonas Stylophora pistillata Is Dominated by The Microbiome of the Red Sea Coral

K. Hughen, M. Aranda, T. Mincer, 2013 .

The microbiome of the Red Sea coral Stylophora pistillata is dominated by tissue-associated 1 Endozoicomonas bacteria 2 3 Running title : Endozoicomonas association with S . pistillata

K. Hughen, M. Aranda, T. Mincer, 2013 .

Small-Scale Variability Dominates Benthic Coverage and Diversity Across the Jardines de La Reina, Cuba Coral Reef System

M. Armenteros, A. Apprill, L. Weber, 2019, Front. Mar. Sci..

Multiscale spatio-temporal patterns of boat noise on U.S. Virgin Island coral reefs.

T. Mooney, J. Llopiz, A. Apprill, 2018, Marine pollution bulletin.

Bio-optical modeling of photosynthetic pigments in corals

Robert R. Bidigare, Eric J. Hochberg, Marlin J. Atkinson, 2006, Coral Reefs.

Variable and spatially explicit response of fish larvae to the playback of local, continuous reef soundscapes

A. Solow, T. Mooney, S. Habtes, 2020 .

Photosynthetic maximum quantum yield increases are an essential component of the Southern Ocean phytoplankton response to iron

B Greg Mitchell, R. Bidigare, B. Mitchell, 2008, Proceedings of the National Academy of Sciences.

Stony coral tissue loss disease induces transcriptional signatures of in situ degradation of dysfunctional Symbiodiniaceae

D. Holstein, T. Smith, L. Mydlarz, 2023, Nature communications.

1 Title : Diel , daily , and spatial variation of coral reef seawater microbial communities 1 2

A. Apprill, L. Weber, 2020 .

Ramicrusta invasive alga causes mortality in Caribbean coral larvae

T. Mooney, A. Apprill, Nadége Aoki, 2023, Frontiers in Marine Science.

Diel, daily, and spatial variation of coral reef seawater microbial communities

A. Apprill, L. Weber, 2020, PloS one.

Multiscale spatio-temporal patterns of boat noise on U.S. Virgin Island coral reefs.

J. Llopiz, A. Apprill, J. Suca, 2018, Marine Pollution Bulletin.

Microbial signatures of protected and impacted Northern Caribbean reefs : changes from Cuba to 2 the Florida Keys 3 4

M. Armenteros, A. Santoro, E. Bartels, 2020 .

Effects of ultraviolet radiation on Laminaria saccharina in relation to depth and tidal height in the Gulf of Maine

M. Lesser, A. Apprill, 2003 .

Incidence of lesions on Fungiidae corals in the eastern Red Sea is related to water temperature and coastal pollution.

K. Hughen, J. Ossolinski, A. Apprill, 2014, Marine environmental research.

Body size data collected non-invasively from drone images indicate a morphologically distinct Chilean blue whale (Balaenoptera musculus) taxon

Carolyn A. Miller, M. Moore, J. Durban, 2020 .