S. Willis

发表

The Tree of Life and a New Classification of Bony Fishes

Thaine W. Rowley, E. Wiley, G. Ortí, 2013, PLoS currents.

Multi-locus species tree for the Amazonian peacock basses (Cichlidae: Cichla): emergent phylogenetic signal despite limited nuclear variation.

G. Ortí, S. Willis, I. Farias, 2013, Molecular phylogenetics and evolution.

TWENTY-FIVE Molecular signatures of Neogene biogeographical events in the Amazon fi sh fauna

J. Albert, S. Willis, N. Lovejoy, 2009 .

Molecular Signatures of Neogene Biogeographical Events in the Amazon Fish Fauna

J. Albert, S. Willis, N. Lovejoy, 2010 .

Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage

J. Puritz, S. Willis, Jonathan B. Puritz, 2017, Molecular ecology resources.

Inference of ploidy by leveraging read depth from amplicon sequencing

S. Narum, T. Delomas, S. Willis, 2020, bioRxiv.

A genomic assessment of movement and gene flow around the South Florida vicariance zone in the migratory coastal blacknose shark, Carcharhinus acronotus

S. Willis, D. Portnoy, R. Dean Grubbs, 2019, Marine Biology.

Gill transcriptome of the yellow peacock bass (Cichla ocellaris monoculus) exposed to contrasting physicochemical conditions

James J. Cai, G. Wang, K. Winemiller, 2022, Conservation Genetics Resources.

Morphology and Efficiency of a Specialized Foraging Behavior, Sediment Sifting, in Neotropical Cichlid Fishes

K. Winemiller, R. Honeycutt, H. López-Fernández, 2014, PloS one.

One species or four? Yes!...and, no. Or, arbitrary assignment of lineages to species obscures the diversification processes of Neotropical fishes

S. Willis, 2017, PloS one.

Systematics, biogeography, and evolution of the Neotropical peacock basses Cichla (Perciformes: Cichlidae).

C. Montaña, S. Willis, N. Lovejoy, 2007, Molecular phylogenetics and evolution.

These aren’t the loci you’e looking for: Principles of effective SNP filtering for molecular ecologists

J. Puritz, S. Willis, C. Hollenbeck, 2018, Molecular ecology.

Osmoregulation in freshwaters: Gene expression in the gills of a Neotropical cichlid in contrasting pH and ionic environments

James J. Cai, K. Winemiller, Gang Wang, 2018, bioRxiv.

Simultaneous delimitation of species and quantification of interspecific hybridization in Amazonian peacock cichlids (genus cichla) using multi-locus data

G. Ortí, J. Macrander, S. Willis, 2012, BMC Evolutionary Biology.

Genetic recruitment patterns are patchy and spatiotemporally unpredictable in a deep-water snapper (Lutjanus vivanus) sampled in fished and protected areas of western Puerto Rico

J. Puritz, S. Willis, Jonathan B. Puritz, 2022, Conservation Genetics.

Phylogenetic relationships of tropical eastern Pacific snappers (Lutjanidae) inferred from mitochondrial DNA sequences

M. Renshaw, G. Voelker, J. Puritz, 2015 .

Genotyping single nucleotide polymorphisms and inferring ploidy by amplicon sequencing for polyploid, ploidy‐variable organisms

S. Narum, T. Delomas, P. Anders, 2021, Molecular ecology resources.

Molecular systematics of the neotropical shovelnose catfish genus Pseudoplatystoma Bleeker 1862 based on nuclear and mtDNA markers.

G. Ortí, P. M. Galetti, S. Willis, 2011, Molecular phylogenetics and evolution.

Phylogeography of Cichla (Cichlidae) in the upper Madera basin (Bolivian Amazon).

E. Desmarais, S. Willis, J. Renno, 2006, Molecular phylogenetics and evolution.

Molecular phylogenetics of New World searobins (Triglidae; Prionotinae).

K. Conway, S. Willis, J. Gold, 2017, Molecular phylogenetics and evolution.

The largest fish in the world’s biggest river: Genetic connectivity and conservation of Arapaima gigas in the Amazon and Araguaia-Tocantins drainages

M. Crossa, T. Hrbek, I. Sampaio, 2019, PloS one.

Population genetic structure of the Amazonian black flannelmouth characin (Characiformes, Prochilodontidae: Prochilodus nigricans Spix & Agassiz, 1829): contemporary and historical gene flow of a migratory and abundant fishery species

T. Hrbek, S. Willis, I. Farias, 2016, Environmental Biology of Fishes.

Steelhead (Oncorhynchus mykiss) lineages and sexes show variable patterns of association of adult migration timing and age‐at‐maturity traits with two genomic regions

S. Narum, J. Hess, S. Willis, 2020, Evolutionary applications.

A genomic assessment of movement and gene flow around the South Florida vicariance zone in the migratory coastal blacknose shark, Carcharhinus acronotus

S. Willis, D. Portnoy, R. Dean Grubbs, 2019, Marine Biology.

Species-level phylogeny of 'Satan's perches' based on discordant gene trees (Teleostei: Cichlidae: Satanoperca Günther 1862).

G. Ortí, C. Montaña, H. López-Fernández, 2012, Molecular phylogenetics and evolution.

Implications of Large-Effect Loci for Conservation: A Review and Case Study with Pacific Salmon.

E. Anderson, T. Quinn, G. Pess, 2022, The Journal of heredity.

Reviewing and Synthesizing the State of the Science Regarding Associations between Adult Run Timing and Specific Genotypes in Chinook Salmon and Steelhead: Report of a workshop held in Seattle, Washington, 27–28 February 2020

E. Anderson, D. Pearse, M. Kardos, 2020 .

Population Structure of White Sturgeon (Acipenser transmontanus) in the Columbia River Inferred from Single-Nucleotide Polymorphisms

S. Narum, R. Beamesderfer, S. Willis, 2022, Diversity.

Population genetics of the speckled peacock bass (Cichla temensis), South America’s most important inland sport fishery

K. Winemiller, G. Ortí, J. Macrander, 2015, Conservation Genetics.

Genomic region associated with run timing has similar haplotypes and phenotypic effects across three lineages of Chinook salmon

S. Narum, J. Hess, S. Willis, 2021, Evolutionary applications.

TESTING MITOCHONDRIAL CAPTURE AND DEEP COALESCENCE IN AMAZONIAN CICHLID FISHES (CICHLIDAE: CICHLA)

G. Ortí, S. Willis, I. Farias, 2014, Evolution; international journal of organic evolution.

The Casiquiare river acts as a corridor between the Amazonas and Orinoco river basins: biogeographic analysis of the genus Cichla

G. Ortí, C. Montaña, S. Willis, 2010, Molecular ecology.

These aren’t the loci you’e looking for: Principles of effective SNP filtering for molecular ecologists

S. Willis, Jonathan B. Puritz, C. Hollenbeck, 2018, Molecular ecology.

Multi-locus species tree for the Amazonian peacock basses (Cichlidae: Cichla): emergent phylogenetic signal despite limited nuclear variation.

G. Ortí, S. Willis, I. Farias, 2013, Molecular phylogenetics and evolution.

TESTING MITOCHONDRIAL CAPTURE AND DEEP COALESCENCE IN AMAZONIAN CICHLID FISHES (CICHLIDAE: CICHLA)

G. Ortí, S. Willis, I. Farias, 2014, Evolution; international journal of organic evolution.

Cichla cataractae (Cichliformes: Cichlidae), new species of peacock bass from the Essequibo Basin, Guyana and Venezuela

K. Winemiller, D. Taphorn, M. Sabaj, 2020, Proceedings of the Academy of Natural Sciences of Philadelphia.