Soma Dhakal

发表

A single-molecule platform for investigation of interactions between G-quadruplexes and small-molecule ligands.

S. Balasubramanian, H. Sugiyama, H. Mao, 2011, Nature chemistry.

Rational design of DNA-actuated enzyme nanoreactors guided by single molecule analysis.

Hao Yan, M. Bathe, N. Walter, 2016, Nanoscale.

Electron Microscopic Visualization of Protein Assemblies on Flattened DNA Origami.

Joseph Nichols, Georgios Skiniotis, Shuoxing Jiang, 2015, ACS nano.

Recent applications of FRET-based multiplexed techniques

Soma Dhakal, Anisa Kaur, 2020 .

Single-Molecule FRET-Based Dynamic DNA Sensor.

Soma Dhakal, Anoja Megalathan, Kalani M Wijesinghe, 2021, ACS sensors.

Nascent RNA transcripts facilitate the formation of G-quadruplexes

H. Mao, Zheng Tan, Prakash Shrestha, 2014, Nucleic acids research.

Build Your Own Microscope: Step-By-Step Guide for Building a Prism-Based TIRF Microscope

Soma Dhakal, Anisa Kaur, Dalton R Gibbs, 2018, Methods and protocols.

Nanocaged enzymes with enhanced catalytic activity and increased stability against protease digestion

Hao Yan, Alexander Johnson-Buck, Minghui Liu, 2016, Nature Communications.

Assembly of multienzyme complexes on DNA nanostructures

Hao Yan, Minghui Liu, Jinglin Fu, 2016, Nature Protocols.

Single-Molecule Analysis of DNA Branch Migration under Biomimetic Environments.

Soma Dhakal, Roaa Mahmoud, 2022, The journal of physical chemistry. B.

Single-molecule tools for enzymology, structural biology, systems biology and nanotechnology: an update

N. Walter, Laurie A. Heinicke, Soma Dhakal, 2014, Archives of Toxicology.

A bio-hybrid DNA rotor/stator nanoengine that moves along predefined tracks

Julián Valero, Michael Famulok, Nils G. Walter, 2018, Nature Nanotechnology.

Homologous Recombination under the Single-Molecule Fluorescence Microscope

Soma Dhakal, Dalton R Gibbs, 2019, International journal of molecular sciences.

Intramolecular Folding in Human ILPR Fragment with Three C-Rich Repeats

H. Mao, D. Koirala, Soma Dhakal, 2012, PloS one.

Structural and mechanical properties of individual human telomeric G-quadruplexes in molecularly crowded solutions

H. Mao, D. Koirala, Yunxi Cui, 2013, Nucleic acids research.

ILPR G-quadruplexes formed in seconds demonstrate high mechanical stabilities.

S. Basu, H. Mao, Soma Dhakal, 2009, Journal of the American Chemical Society.

G-quadruplex and i-motif are mutually exclusive in ILPR double-stranded DNA.

H. Mao, D. Koirala, Yunxi Cui, 2012, Biophysical journal.

Direct experimental evidence for quadruplex–quadruplex interaction within the human ILPR

Zhongbo Yu, Soumitra Basu, Soma Dhakal, 2009, Nucleic acids research.

Molecular population dynamics of DNA structures in a bcl-2 promoter sequence is regulated by small molecules and the transcription factor hnRNP LL

Hyun-Jin Kang, H. Mao, L. Hurley, 2014, Nucleic acids research.

Direct unfolding of RuvA-HJ complex at the single-molecule level.

Soma Dhakal, Anisa Kaur, Dalton R Gibbs, 2021, Biophysical journal.

Coexistence of an ILPR i-motif and a partially folded structure with comparable mechanical stability revealed at the single-molecule level.

S. Basu, H. Mao, D. Koirala, 2010, Journal of the American Chemical Society.

Single-Molecule Sensor for High-Confidence Detection of miRNA.

J. Harrell, M. Kanak, Soma Dhakal, 2022, ACS sensors.

Nanopore Analysis as a Tool for Studying Rapid Holliday Junction Dynamics and Analyte Binding.

J. Reiner, Soma Dhakal, Dalton R Gibbs, 2022, Analytical Chemistry.

Single-Molecule Analysis of Nanocircle-Embedded I-Motifs under Crowding.

Soma Dhakal, Anoja Megalathan, Kalani M Wijesinghe, 2021, The journal of physical chemistry. B.

Multiplexed Nucleic Acid Sensing with Single-Molecule FRET.

Soma Dhakal, Anisa Kaur, K. Sapkota, 2019, ACS sensors.

Single-molecule measurements of the binding between small molecules and DNA aptamers.

H. Mao, D. Koirala, Soma Dhakal, 2012, Analytical chemistry.

Multiplexed smFRET Nucleic Acid Sensing Using DNA Nanotweezers

Soma Dhakal, Anisa Kaur, Anoja Megalathan, 2023, Biosensors.

Single-Step FRET-Based Detection of Femtomoles DNA

Kumar Sapkota, Anisa Kaur, Anoja Megalathan, 2019, Sensors.

FRET-Based Single-Molecule Detection of Pathogen Protein IsdA Using Computationally Selected Aptamers.

Soma Dhakal, Godfred O Sabbih, Kalani M Wijesinghe, 2023, Analytical chemistry.

MASH-FRET: A Simplified Approach for Single-Molecule Multiplexing Using FRET.

Soma Dhakal, Anisa Kaur, Mischa Ellison, 2021, Analytical Chemistry.

Meeting report: SMART timing--principles of single molecule techniques course at the University of Michigan 2014.

N. Walter, Thomas C. Custer, P. E. Lund, 2015, Biopolymers.

Single-molecule analysis of i-motif within self-assembled DNA duplexes and nanocircles

J. Reiner, Soma Dhakal, Anisa Kaur, 2019, Nucleic acids research.

Single-molecule tools for enzymology, structural biology, systems biology and nanotechnology: an update

N. Walter, Laurie A. Heinicke, Soma Dhakal, 2014, Archives of Toxicology.

Nanocaged enzymes with enhanced catalytic activity and increased stability against protease digestion

Hao Yan, Yan Liu, N. Walter, 2016, Nature Communications.

Computational generation and characterization of IsdA‐binding aptamers with single‐molecule FRET analysis

Soma Dhakal, Godfred O Sabbih, Kalani M Wijesinghe, 2023, Biotechnology Journal.

FRET-Based Aptasensor for the Selective and Sensitive Detection of Lysozyme

Kumar Sapkota, Soma Dhakal, Soma Dhakal, 2020, Sensors.

A single-molecule platform for investigation of interactions between G-quadruplexes and small-molecule ligands.

S. Balasubramanian, H. Sugiyama, H. Mao, 2011, Nature chemistry.

ILPR G-quadruplexes formed in seconds demonstrate high mechanical stabilities.

S. Basu, H. Mao, Soma Dhakal, 2009, Journal of the American Chemical Society.

Detection of single nucleotide polymorphism using tension-dependent stochastic behavior of a single-molecule template.

H. Mao, D. Koirala, Soma Dhakal, 2011, Journal of the American Chemical Society.