Sonu Kumar

发表

Correction: CleavPredict: A Platform for Reasoning about Matrix Metalloproteinases Proteolytic Events

Jeffrey W. Smith, P. Cieplak, M. Kazanov, 2015, PloS one.

HIV-1 vaccine design through minimizing envelope metastability

D. Burton, I. Wilson, D. Nemazee, 2018, bioRxiv.

HIV-1 vaccine design through minimizing envelope metastability

D. Burton, I. Wilson, D. Nemazee, 2018, Science Advances.

The human naive B cell repertoire contains distinct subclasses for a germline-targeting HIV-1 vaccine immunogen

Daniel W. Kulp, Xiaozhen Hu, J. Diedrich, 2018, Science Translational Medicine.

Conformational Plasticity in the HIV-1 Fusion Peptide Facilitates Recognition by Broadly Neutralizing Antibodies

John P. Moore, I. Wilson, N. Wu, 2019, Cell host & microbe.

Structure and immunogenicity of a stabilized HIV-1 envelope trimer based on a group-M consensus sequence

John P. Moore, M. V. van Breemen, I. Wilson, 2019, Nature Communications.

Structure of a cleavage-independent HIV Env recapitulates the glycoprotein architecture of the native cleaved trimer

R. Wyatt, I. Wilson, S. Sharma, 2018, Nature Communications.

Effect of phosphorylation and single nucleotide polymorphisms on caspase substrates processing

P. Cieplak, Sonu Kumar, 2018, Apoptosis.

Caspase Cleavage Sites in the Human Proteome: CaspDB, a Database of Predicted Substrates

P. Cieplak, G. Salvesen, Sonu Kumar, 2014, Apoptosis.

Capturing the inherent structural dynamics of the HIV-1 envelope glycoprotein fusion peptide

John P. Moore, I. Wilson, A. Ward, 2019, Nature Communications.

Glucogallin Attenuates RAW 264.7 Cells from Arsenic Trioxide Induced Toxicity via the NF-ҡB/NLRP3 Pathway

V. Ravichandiran, D. Ghosh, A. Bhattacharya, 2022, Molecules.

CaspNeuroD: a knowledgebase of predicted caspase cleavage sites in human proteins related to neurodegenerative diseases

Sonu Kumar, Piotr Cieplak, P. Cieplak, 2016, Database J. Biol. Databases Curation.

Understanding the Specificity of Human Galectin-8C Domain Interactions with Its Glycan Ligands Based on Molecular Dynamics Simulations

Martin Frank, Reinhard Schwartz-Albiez, M. Frank, 2013, PloS one.

The G protein-coupled receptors in the pufferfish Takifugu rubripes

Sonu Kumar, Durai Sundar, Anita Sarkar, 2011, BMC Bioinformatics.

High glucose-induced increasing reactive nitrogen species accumulation triggered mitochondrial dysfunction, inflammation, and apoptosis in keratinocytes.

Sonu Kumar, Arttatrana Pal, Huma Rizwan, 2022, Life sciences.

Closing and Opening Holes in the Glycan Shield of HIV-1 Envelope Glycoprotein SOSIP Trimers Can Redirect the Neutralizing Antibody Response to the Newly Unmasked Epitopes

Andrew B. Ward, Ian A. Wilson, David C. Montefiori, 2018, Journal of Virology.

Single-component multilayered self-assembling nanoparticles presenting rationally designed glycoprotein trimers as Ebola virus vaccines

I. Wilson, R. Stanfield, Jiang Zhu, 2020, Nature Communications.

A VH1-69 antibody lineage from an infected Chinese donor potently neutralizes HIV-1 by targeting the V3 glycan supersite

I. Wilson, Jiang Zhu, K. Hong, 2020, Science Advances.

CleavPredict: A Platform for Reasoning about Matrix Metalloproteinases Proteolytic Events

Piotr Cieplak, Marat D. Kazanov, Boris I. Ratnikov, 2015, PloS one.

Capturing the inherent structural dynamics of the HIV-1 envelope glycoprotein fusion peptide

John P. Moore, I. Wilson, A. Ward, 2019, Nature Communications.

Analysis and Prediction of DNA-Recognition by Zinc Finger Proteins: Applications in Genome Modification

Abhinav Grover, Durai Sundar, Anita Sarkar, 2011 .

Neutralizing Antibodies Induced by First-Generation gp41-Stabilized HIV-1 Envelope Trimers and Nanoparticles

I. Wilson, A. Ward, Jiang Zhu, 2020, bioRxiv.

High-Throughput Multiplexed Peptide-Centric Profiling Illustrates Both Substrate Cleavage Redundancy and Specificity in the MMP Family.

Piotr Cieplak, David A. Routenberg, Muskan Kukreja, 2015, Chemistry & biology.

A cross-neutralizing antibody between HIV-1 and influenza virus

I. Wilson, N. Wu, A. Ward, 2021, PLoS pathogens.

Structure of a cleavage-independent HIV Env recapitulates the glycoprotein architecture of the native cleaved trimer

R. Wyatt, I. Wilson, S. Sharma, 2018, Nature Communications.

Structure and immunogenicity of a stabilized HIV-1 envelope trimer based on a group-M consensus sequence

John P. Moore, M. V. van Breemen, I. Wilson, 2019, Nature Communications.

Controlling aggregation propensity in A53T mutant of alpha-synuclein causing Parkinson's disease.

Durai Sundar, Anita Sarkar, D. Sundar, 2009, Biochemical and biophysical research communications.

Protein Aggregation in Neurodegenerative Diseases: Insights from Computational Analyses

D. Sundar, A. Grover, Sonu Kumar, 2012 .

Phosphorylation of multifunctional galectins by protein kinases CK1, CK2, and PKA.

W. Lehmann, H. Gabius, D. Kübler, 2014, Analytical biochemistry.

Role of N-glycosylation in activation of proMMP-9. A molecular dynamics simulations study

P. Cieplak, Sonu Kumar, 2018, PloS one.

Matrix Metalloproteinase (MMP) Proteolysis of the Extracellular Loop of Voltage-gated Sodium Channels and Potential Alterations in Pain Signaling*

A. Strongin, P. Cieplak, V. Shubayev, 2015, The Journal of Biological Chemistry.

Germline-targeting HIV-1 Env vaccination induces VRC01-class antibodies with rare insertions

B. Haynes, John P. Moore, M. V. van Breemen, 2023, Cell reports. Medicine.

Crystal structure of the B41 SOSIP.664 Env trimer with PGT124 and 35O22 Fabs, in P23 space group

John P. Moore, I. Wilson, A. Ward, 2019 .