Y. Shichida

T. Morizumi, Y. Shichida, H. Imai, 2005, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

Parietal-Eye Phototransduction Components and Their Potential Evolutionary Implications

Akihisa Terakita, Yoshinori Shichida, K. Yau, 2006, Science.

Counterion displacement in the molecular evolution of the rhodopsin family

T. Miyata, A. Terakita, M. Koyanagi, 2004, Nature Structural &Molecular Biology.

A Non-Mammalian Type Opsin 5 Functions Dually in the Photoreceptive and Non-Photoreceptive Organs of Birds

H. Ohuchi, S. Noji, Y. Shichida, 2012, PloS one.

Conserved proline residue at position 189 in cone visual pigments as a determinant of molecular properties different from rhodopsins.

A. Terakita, Y. Shichida, H. Imai, 2002, Biochemistry.

Elementary response triggered by transducin in retinal rods

K. Yau, D. Silverman, Jeannie Chen, 2019, Proceedings of the National Academy of Sciences.

Direct Observation of the Bridged Water Stretching Vibrations Inside a Protein

Y. Shichida, Hideki Kandori and, 2000 .

Structural change of threonine 89 upon photoisomerization in bacteriorhodopsin as revealed by polarized FTIR spectroscopy.

J. Lanyi, J. Herzfeld, H. Kandori, 1999, Biochemistry.

Protein Structural Changes in Bacteriorhodopsin upon Photoisomerization As Revealed by Polarized FTIR Spectroscopy

H. Kandori, Y. Shichida, A. Maeda, 1998 .

Cysteine S−H as a Hydrogen-Bonding Probe in Proteins

J. Lanyi, H. Kandori, Y. Shichida, 1998 .

Three Putative Photosensory Light, Oxygen or Voltage (LOV) Domains with Distinct Biochemical Properties from the Filamentous Cyanobacterium Anabaena sp. PCC 7120

M. Ikeuchi, R. Narikawa, K. Okajima, 2006, Photochemistry and photobiology.

Spectroscopic observation of the intramolecular electron transfer in the photoactivation processes of nitrile hydratase.

H. Sasabe, I. Endo, H. Kandori, 1994, Biochemistry.

Conformational Differences among Metarhodopsin I, Metarhodopsin II, and Opsin Probed by Wide-Angle X-ray Scattering

Ryo Maeda, T. Oka, Keiichi Kojima, 2019, The Journal of Physical Chemistry B.

Contribution of glutamic acid in the conserved E/DRY triad to the functional properties of rhodopsin.

Keita Sato, Y. Shichida, T. Yamashita, 2014, Biochemistry.

Efficiencies of activation of transducin by cone and rod visual pigments.

Y. Shichida, T. Yamashita, Y. Imamoto, 2013, Biochemistry.

Chloride-dependent spectral tuning mechanism of L-group cone visual pigments.

T. Morizumi, Y. Shichida, T. Yamashita, 2013, Biochemistry.

Expression and localization of an exogenous G protein-coupled receptor fused with the rhodopsin C-terminal sequence in the retinal rod cells of knockin mice.

Y. Fujiyoshi, Y. Shichida, H. Imai, 2005, Experimental eye research.

EXCITED STATE DYNAMICS OF RETINAL PROTEINS AS STUDIED BY FOURIER TRANSFORM OF OPTICAL ABSORPTION SPECTRUM—II. THEORETICAL ANALYSIS OF WAVEPACKET PROPAGATION OF RHODOPSIN

Y. Shichida, T. Kakitani, Y. Hatano, 1992 .

Comparative studies on the late bleaching processes of four kinds of cone visual pigments and rod visual pigment.

Keita Sato, Y. Shichida, T. Yamashita, 2012, Biochemistry.

Retinoids and related compounds. Part 20.1 Synthesis of(11Z)-8,18-ethanoretinal and a conformational study of therhodopsin chromophore

Y. Shichida, M. Yamauchi, M. Sakai, 1997 .

A NOVEL RHODOPSIN ANALOGUE POSSESSING THE CYCLOPENTATRIENYLIDENE STRUCTURE AS THE LL-CIS-LOCKED AND THE FULL PLANAR CHROMOPHORE

Y. Fukada, T. Yoshizawa, Y. Shichida, 1982 .

Interaction of Asn105 with the retinal chromophore during photoisomerization of pharaonis phoborhodopsin.

N. Kamo, H. Kandori, Y. Shichida, 2002, Biochemistry.

Rod Visual Pigment Optimizes Active State to Achieve Efficient G Protein Activation as Compared with Cone Visual Pigments*

Ryo Maeda, Keiichi Kojima, Y. Shichida, 2013, The Journal of Biological Chemistry.

Direct observation of the complex formation of GDP-bound transducin with the rhodopsin intermediate having a visible absorption maximum in rod outer segment membranes.

T. Morizumi, Y. Shichida, H. Imai, 2005, Biochemistry.

Structural changes in lumirhodopsin and metarhodopsin I studied by their photoreactions at 77 K.

H. Kandori, Y. Shichida, Y. Furutani, 2003, Biochemistry.

Amino acid residues responsible for the meta-III decay rates in rod and cone visual pigments.

T. Morizumi, Y. Shichida, H. Imai, 2005, Biochemistry.

Two UV-Sensitive Photoreceptor Proteins, Opn5m and Opn5m2 in Ray-Finned Fish with Distinct Molecular Properties and Broad Distribution in the Retina and Brain

M. Kinoshita, H. Ohuchi, Keita Sato, 2016, PloS one.

Amino acid residue at position 188 determines the UV-sensitive bistable property of vertebrate non-visual opsin Opn5

H. Ohuchi, Keita Sato, Y. Shichida, 2022, Communications Biology.

Chimeric nature of pinopsin between rod and cone visual pigments.

Y. Fukada, T. Okano, D. Kojima, 1999, Biochemistry.

Cephalochordate Melanopsin: Evolutionary Linkage between Invertebrate Visual Cells and Vertebrate Photosensitive Retinal Ganglion Cells

Hisao Tsukamoto, Akihisa Terakita, Yoshinori Shichida, 2005, Current Biology.

SYNTHESIS AND PROPERTIES OF 12-FLUORORETINAL AND 12-FLUORORHODOPSIN. MODEL SYSTEM FOR FLUORINE-19 NMR STUDIES OF VISUAL PIGMENTS

F. Dahlquist, T. Yoshizawa, Y. Shichida, 1981 .

Demonstration of a rhodopsin‐retinochrome system in the stalk eye of a marine gastropod, onchidium, by immunohistochemistry

A. Terakita, Y. Shichida, N. Katagiri, 2001, The Journal of comparative neurology.

Retinoids and related compounds. Part 26. Synthesis of (11Z)-8,18-propano- and methano-retinals and conformational study of the rhodopsin chromophore

Y. Shichida, H. Imai, A. Wada, 2001 .

Spectra and Structures of Photorhodopsin and Bathorhodopsin Studied by Picosecond Laser Photolysis

H. Kandori, T. Yoshizawa, Y. Shichida, 1991 .

FOURIER TRANSFORM INFRARED SPECTRAL STUDIES ON THE SCHIFF BASE MODE OF ALL‐trans BACTERIORHODOPSIN and ITS PHOTOINTERMEDIATES, K and L *

T. Yoshizawa, Y. Shichida, A. Maeda, 1991 .

Physiological properties of rod photoreceptor cells in green-sensitive cone pigment knock-in mice.

K. Nakatani, Y. Shichida, J. Usukura, 2007, The Journal of general physiology.

Physiological Properties of Rod Photoreceptor Cells in Green-sensitive Cone Pigment Knock-in Mice

K. Nakatani, Y. Shichida, J. Usukura, 2007, The Journal of General Physiology.

Generation of Knock-in Mice Carrying Third Cones with Spectral Sensitivity Different from S and L Cones

M. Tachibana, Y. Shichida, H. Imai, 2005, Zoological science.

Evolutionary history of teleost intron-containing and intron-less rhodopsin genes

H. Ohuchi, Keita Sato, Y. Shichida, 2019, Scientific Reports.

Title Pinopsin evolved as the ancestral dim-light visual opsin invertebrates

H. Ohuchi, Keita Sato, Keiichi Kojima, 2019 .

Pinopsin evolved as the ancestral dim-light visual opsin in vertebrates

H. Ohuchi, Keita Sato, Keiichi Kojima, 2018, Communications Biology.

Adaptation of cone pigments found in green rods for scotopic vision through a single amino acid mutation

Keiichi Kojima, Takahiro Yamashita, Keisuke Sakurai, 2017, Proceedings of the National Academy of Sciences.

Opn5 is a UV-sensitive bistable pigment that couples with Gi subtype of G protein

K. Ikeda, H. Ohuchi, Y. Shichida, 2010, Proceedings of the National Academy of Sciences.

Vertebrate ancient-long opsin has molecular properties intermediate between those of vertebrate and invertebrate visual pigments.

H. Ohuchi, Keita Sato, Y. Shichida, 2011, Biochemistry.

Formation of 7-cis- and 13-cis-retinal pigments by irradiating squid rhodopsin.

T. Yoshizawa, Y. Shichida, A. Maeda, 1979, Biochemistry.

Circular dichroism of squid rhodopsin and its intermediates.

T. Yoshizawa, Y. Shichida, F. Tokunaga, 1978, Biochimica et biophysica acta.

Chromophore configuration of pharaonis phoborhodopsin and its isomerization on photon absorption.

N. Kamo, J. Hirayama, T. Yoshizawa, 1992, Biochemistry.

Photocycle of phoborhodopsin from haloalkaliphilic bacterium (Natronobacterium pharaonis) studied by low-temperature spectrophotometry.

N. Kamo, J. Hirayama, T. Yoshizawa, 1992, Biochemistry.

Photoreaction cycle of phoborhodopsin studied by low-temperature spectrophotometry.

N. Kamo, Y. Kobatake, T. Yoshizawa, 1991, Biochemistry.

Formation of a 7‐cis retinal pigment by irradiating cattle rhodopsin at low temperatures

T. Yoshizawa, Y. Shichida, F. Tokunaga, 1978 .

Squid hypsorhodopsin and bathorhodopsin by a picosecond laser photolysis

Takayoshi Kobayashi, T. Yoshizawa, Y. Shichida, 1977, FEBS letters.

[49] Low-temperature spectrophotometry of intermediates of rhodopsin

T. Yoshizawa, Y. Shichida, 1982 .

Functional role of internal water molecules in rhodopsin revealed by x-ray crystallography

Yoshinori Shichida, Yoshinori Fujiyoshi, Tetsuji Okada, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Chloride effect on iodopsin studied by low-temperature visible and infrared spectroscopies.

H. Kandori, Y. Shichida, H. Imai, 2001, Biochemistry.

Primary intermediates of rhodopsin studied by low temperature spectrophotometry and laser photolysis Bathorhodopsin, hypsorhodopsin and photorhodopsin

T. Yoshizawa, Y. Shichida, S. Matuoka, 1984, Vision Research.

OBSERVATION OF THE PICOSECOND TIME‐RESOLVED SPECTRUM OF SQUID BATHORHODOPSIN AT ROOM TEMPERATURE

Takayoshi Kobayashi, Kaori Suzuki, T. Yoshizawa, 1980 .

SIMULATION ANALYSIS OF THE PHOTOCONVERSION PROCESS OF SQUID RHODOPSIN AT LIQUID HELIUM TEMPERATURE

A. Sarai, T. Yoshizawa, Y. Shichida, 1980 .

First Observation of the Formation Process of Squid Hypsorhodopsin by Picosecond Spectroscopy

T. Yoshizawa, Y. Shichida, S. Nagakura, 1978 .

Photochemical reactions of 13-demethyl visual pigment analogues at low temperatures.

T. Yoshizawa, Y. Shichida, A. Kropf, 1981, Biochemistry.

Ultrafast Isomerization Dynamics of 11-cis-Locked 8-Membered Rhodopsin

H. Sasabe, K. Nakanishi, H. Kandori, 1994 .

A novel rhodopsin analogue possessing the conformationally 6-s-cis-fixed retinylidene chromophore

T. Yoshizawa, Y. Shichida, K. Tsukida, 1985 .

Absorption spectra of intermediates of bacteriorhodopsin measured by laser photolysis at room temperatures

Yoshinori Shichida, T. Yoshizawa, Y. Shichida, 1983 .

LOW TEMPERATURE SPECTROPHOTOMETRIC STUDY OF CATTLE BATHORHODOPSINS PRODUCED FROM RHODOPSIN AND ISORHODOPSIN IN TRANSPARENT MEDIUM WITHOUT CRACKS

T. Yoshizawa, Y. Shichida, T. Ono, 1986, Photochemistry and photobiology.

Low-temperature circular dichroism of intermediates of rhodopsin.

T. Yoshizawa, Y. Shichida, 1982, Methods in enzymology.

DEPENDENCY OF APPARENT RELATIVE QUANTUM YIELD OF ISORHODOPSIN TO RHODOPSIN ON THE PHOTON DENSITY OF PICOSECOND LASER PULSE

H. Nagai, H. Kandori, T. Yoshizawa, 1988, Photochemistry and photobiology.

Thermal Recovery of Iodopsin from Photobleaching Intermediates †

Y. Shichida, Y. Imamoto, 2008, Photochemistry and photobiology.

The primary structure of iodopsin, a chicken red‐sensitive cone pigment

Toshiyuki Okano, Daisuke Kojima, Yoshinori Shichida, 1990, FEBS letters.

Low-temperature spectrophotometry of intermediates of rhodopsin.

T. Yoshizawa, Y. Shichida, 1982, Methods in enzymology.

Photochemical properties of mammalian melanopsin.

Y. Shichida, T. Yamashita, Y. Imamoto, 2012, Biochemistry.

Evolution of opsins and phototransduction

Yoshinori Shichida, Y. Shichida, Take Matsuyama, 2009, Philosophical Transactions of the Royal Society B: Biological Sciences.

FTIR studies of the photoactivation processes in squid retinochrome.

H. Kandori, A. Terakita, Y. Shichida, 2005, Biochemistry.

CONFORMATIONAL ANALYSIS OF THE RHODOPSIN CHROMOPHORE USING BICYCLIC RETINAL ANALOGUES

T. Yoshizawa, Y. Shichida, Y. Imamoto, 1992 .

Analysis of the temperature dependence of femtosecond excited state dynamics of bacteriorhodopsin by spin-boson model

Y. Shichida, T. Kakitani, R. Akiyama, 1996 .

Isomer-Specific Interaction of the Retinal Chromophore with Threonine-118 in Rhodopsin†

H. Kandori, A. Terakita, Y. Shichida, 2002 .

Local and distant protein structural changes on photoisomerization of the retinal in bacteriorhodopsin.

J. Lanyi, J. Herzfeld, H. Kandori, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Cone visual pigments.

Y. Shichida, Y. Imamoto, 2014, Biochimica et biophysica acta.

Corrigenda: Counterion displacement in the molecular evolution of the rhodopsin family

T. Miyata, A. Terakita, M. Koyanagi, 2004, Nature Structural &Molecular Biology.

Constraints of Opsin Structure on the Ligand-binding Site: Studies with Ring-fused Retinals¶

M. Ishiguro, Y. Shichida, H. Imai, 2002 .

Constraints of Opsin Structure on the Ligand‐binding Site: Studies with Ring‐fused Retinals ¶

M. Ishiguro, Y. Shichida, H. Imai, 2002, Photochemistry and photobiology.

Spectroscopic analysis of the effect of chloride on the active intermediates of the primate L group cone visual pigment.

T. Morizumi, Keita Sato, Y. Shichida, 2012, Biochemistry.

Probing for the Threshold Energy for Visual Transduction: Red‐Shifted Visual Pigment Analogs from 3‐Methoxy‐3‐Dehydroretinal and Related Compounds

Y. Shichida, A. Terakita, Y. Shichida, 1999, Photochemistry and photobiology.

Low‐temperature spectrophotometry of phoborhodopsin

Tetsuo Takahashi, N. Kamo, Y. Kobatake, 1988 .

Formation of hypsorhodopsin at room temperature by picosecond green pulse.

T. Yoshizawa, Y. Shichida, S. Matuoka, 1984, Biochimica et biophysica acta.

A Novel Rhodopsin Analogue Possessing the Conformationally 6-s-cis-Fixed Retinylidene Chromophore.

T. Yoshizawa, Y. Shichida, K. Tsukida, 1986 .

Evolutionary adaptation of visual pigments in geckos for their photic environment.

Keiichi Kojima, Y. Shichida, Masataka Yanagawa, 2021, Science advances.

Shift in Conformational Equilibrium Induces Constitutive Activity of G-Protein-Coupled Receptor, Rhodopsin.

Y. Sako, Ryo Maeda, Y. Shichida, 2018, The journal of physical chemistry. B.

- 1-Single-molecule observation of the ligand-induced population shift of rhodopsin , a G-protein coupled receptor

Y. Sako, Ryo Maeda, Y. Shichida, 2018 .

Origin of the low thermal isomerization rate of rhodopsin chromophore

K. Nakanishi, Y. Sako, Keiichi Kojima, 2015, Scientific Reports.

Single-molecule observation of the ligand-induced population shift of rhodopsin, a G-protein-coupled receptor.

Y. Sako, Ryo Maeda, Y. Shichida, 2014, Biophysical journal.

Stereoselective synthesis of 11Z-9-demethyl-9-benzyl- and 9-phenyl-retinals and their interaction with bovine opsin.

Y. Shichida, H. Imai, A. Wada, 1998, Bioorganic & medicinal chemistry letters.

Reason for the lack of light‐dark adaptation inpharaonis phoborhodopsin: reconstitution with 13‐cis‐retinal

N. Kamo, T. Yoshizawa, Y. Shichida, 1995, FEBS letters.

Amphioxus homologs of Go‐coupled rhodopsin and peropsin having 11‐cis‐ and all‐trans‐retinals as their chromophores

K. Kubokawa, A. Terakita, M. Koyanagi, 2002, FEBS letters.

On retention of chromophore configuration of rhodopsin isomers derived from three dicis retinal isomers

T. Yoshizawa, Y. Shichida, Robert S. H. Liu, 1990 .

Low temperature spectrophotometry on the photoreaction cycle of sensory rhodopsin

T. Yoshizawa, Y. Shichida, M. Ariki, 1987 .

Water structural changes in the bacteriorhodopsin photocycle: analysis by Fourier transform infrared spectroscopy.

T. Yoshizawa, Y. Shichida, A. Maeda, 1992, Biochemistry.

Chimeric Proton-Pumping Rhodopsins Containing the Cytoplasmic Loop of Bovine Rhodopsin

K. Sasaki, H. Kandori, Y. Shichida, 2014, PloS one.

Analysis of the Excited-State Dynamics of 13-trans-locked-Bacteriorhodopsin

Y. Shichida, T. Kakitani, R. Akiyama, 1997 .

Diversity of visual pigments from the viewpoint of G protein activation—comparison with other G protein-coupled receptors

Y. Shichida, T. Yamashita, 2003, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

PHOTOSENSITIVITIES OF IODOPSIN AND RHODOPSINS

Y. Fukada, T. Okano, Y. Shichida, 1992, Photochemistry and photobiology.

Comparative study of primary photochemical events of two retinal proteins, bacteriorhodopsin and halorhodopsin, by use of subpicosecond time-resolved spectroscopy

H. Sasabe, K. Yoshihara, H. Kandori, 1993 .

Red-Tuning of the Channelrhodopsin Spectrum Using Long Conjugated Retinal Analogues.

T. Ishizuka, H. Yawo, Y. Shichida, 2018, Biochemistry.

Helical rearrangement of photoactivated rhodopsin in monomeric and dimeric forms probed by high-angle X-ray scattering

Ryo Maeda, T. Oka, Keiichi Kojima, 2015, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

Effect of anion binding on iodopsin studied by low-temperature fourier transform infrared spectroscopy.

M. Groesbeek, H. Kandori, T. Yoshizawa, 1999, Biochemistry.

Chromophore configuration of iodopsin and its photoproducts formed at low temperatures.

T. Yoshizawa, Y. Shichida, Y. Imamoto, 1996, Biochemistry.

Thermal recovery of iodopsin from its meta I‐intermediate

T. Yoshizawa, Y. Shichida, H. Imai, 1994, FEBS letters.

Different phosphorylation rates among vertebrate cone visual pigments with different spectral sensitivities.

Y. Shichida, S. Kawamura, K. Tsutsui, 2013, Biochemical and biophysical research communications.

Covalent Bond between Ligand and Receptor Required for Efficient Activation in Rhodopsin*

Takahiro Yamashita, Yoshinori Shichida, Y. Shichida, 2009, The Journal of Biological Chemistry.

Drosophila melanogaster rhodopsin Rh7 is a UV-to-visible light sensor with an extraordinarily broad absorption spectrum

Y. Shichida, N. Iwabe, T. Yamashita, 2017, Scientific Reports.

Temperature Dependence of Femtosecond Excited State Dynamics of Bacteriorhodopsin Analyzed by the Fourier Transform of Optical Absorption Spectra

Y. Shichida, T. Kakitani, R. Akiyama, 1995 .

Assignment of the vibrational modes of the chromophores of iodopsin and bathoiodopsin: low-temperature fourier transform infrared spectroscopy of 13C- and 2H-labeled iodopsins.

H. Kandori, Y. Shichida, H. Imai, 2006, Biochemistry.

Vision: Dichromatism in macaque monkeys

A. Mikami, T. Yamamori, A. Hanazawa, 1999, Nature.

Title Mapping of the local environmental changes in proteins bycysteine scanning

H. Kandori, A. Terakita, Y. Shichida, 2017 .

Functional analysis of the second extracellular loop of rhodopsin by characterizing split variants

Y. Shichida, T. Yamashita, Y. Imamoto, 2010, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

Synthesis of 11Z-8,18-propano- and methano-retinals and their interaction with bovine opsin.

Y. Shichida, H. Imai, A. Wada, 1995, Chemical & pharmaceutical bulletin.

O‐Glycosylation of G‐protein‐coupled receptor, octopus rhodopsin

Y. Shichida, S. Takasaki, M. Nakagawa, 2001, FEBS letters.

Bitter Taste Receptors of Primates

Y. Shichida, T. Yamashita, H. Imai, 2013 .

Variations in long- and middle-wavelength-sensitive opsin gene loci in crab-eating monkeys

H. Komatsu, A. Mikami, T. Yamamori, 2002, Vision Research.

Evolution and Senses

Y. Shichida, T. Yamashita, H. Imai, 2013, SpringerBriefs in Biology.

Aquatic Adaptation and the Evolution of the Loss of Olfaction in Amniotes

Y. Shichida, T. Yamashita, H. Imai, 2013 .

Title Diversification of non-visual photopigment parapinopsin inspectral sensitivity for diverse pineal functions

K. Kawakami, S. Kuraku, A. Terakita, 2018 .

Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions

K. Kawakami, S. Kuraku, A. Terakita, 2015, BMC Biology.

Immunohistochemical characterization of a parapinopsin-containing photoreceptor cell involved in the ultraviolet/green discrimination in the pineal organ of the river lamprey Lethenteron japonicum

A. Terakita, M. Koyanagi, Y. Shichida, 2007, Journal of Experimental Biology.

Parallelism of amino acid changes at the RH1 affecting spectral sensitivity among deep-water cichlids from Lakes Tanganyika and Malawi.

G. Turner, N. Okada, T. Sugawara, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Molecular Aspects of Evolution and Diversity of Animal Photoreception

Y. Shichida, T. Yamashita, H. Imai, 2013 .

Multiple functions of Schiff base counterion in rhodopsins

Y. Shichida, K. Tsutsui, 2010, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

A Novel Go-mediated Phototransduction Cascade in Scallop Visual Cells*

Y. Tsukahara, D. Kojima, A. Terakita, 1997, The Journal of Biological Chemistry.

Beta-Arrestin Functionally Regulates the Non-Bleaching Pigment Parapinopsin in Lamprey Pineal

A. Terakita, M. Koyanagi, Y. Shichida, 2011, PloS one.

Two isoforms of chicken melanopsins show blue light sensitivity

Y. Fukada, T. Okano, D. Kojima, 2007, FEBS letters.

Bistable UV pigment in the lamprey pineal.

A. Terakita, M. Koyanagi, Y. Shichida, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Evolutionary history of teleost intron-containing and intron-less rhodopsin genes

H. Ohuchi, Keita Sato, Y. Shichida, 2019, Scientific Reports.

Divergent Selection on Opsins Drives Incipient Speciation in Lake Victoria Cichlids

Masakatsu Watanabe, N. Okada, O. Seehausen, 2006, PLoS biology.

Novel missense mutations in red/green opsin genes in congenital color-vision deficiencies.

Y. Nishida, H. Ueyama, Y. Shichida, 2002, Biochemical and biophysical research communications.

Pigmented and nonpigmented ocelli in the brain vesicle of the ascidian larva

H. Ohtsuki, T. Horie, A. Terakita, 2008, The Journal of comparative neurology.

Analysis of L-cone/M-cone visual pigment gene arrays in Japanese males with protan color-vision deficiency

Y. Nishida, H. Ueyama, Y. Shichida, 2004, Vision Research.

Genotype determination of the OPN1LW/OPN1MW genes: novel disease-causing mechanisms in Japanese patients with blue cone monochromacy

H. Kurahashi, H. Ogita, M. Kondo, 2018, Scientific Reports.

Unique haplotype in exon 3 of cone opsin mRNA affects splicing of its precursor, leading to congenital color vision defect.

H. Ogita, H. Ueyama, Y. Shichida, 2012, Biochemical and biophysical research communications.

Title Genotype determination of the OPN 1 LW / OPN 1 MW genes : novel disease-causing mechanisms in Japanese patients with blue cone monochromacy

H. Kurahashi, H. Ogita, M. Kondo, 2019 .

Genotype determination of the OPN1LW/OPN1MW genes: novel disease-causing mechanisms in Japanese patients with blue cone monochromacy

H. Kurahashi, H. Ogita, M. Kondo, 2018, Scientific Reports.

Farnesylation of Retinal Transducin Underlies Its Translocation during Light Adaptation

K. Yau, Y. Fukada, Kenji Nakamura, 2005, Neuron.

The C-terminus of the G protein α subunit controls the affinity of nucleotides.

Y. Shichida, T. Yamashita, Y. Imamoto, 2012, Biochemistry.

G Protein Subtype Specificity of Rhodopsin Intermediates Metarhodopsin Ib and Metarhodopsin II

T. Morizumi, A. Terakita, Y. Shichida, 2009, Photochemistry and photobiology.

Identification of a new intermediate state that binds but not activates transducin in the bleaching process of bovine rhodopsin

Y. Shichida, A. Terakita, Y. Shichida, 1998, FEBS letters.

Structure around C6-C7 bond of the chromophore in bathorhodopsin: low-temperature spectroscopy of 6s-cis-locked bicyclic rhodopsin analogs.

Y. Shichida, A. Wada, M. Ito, 1996, Biochemistry.

Distinct Roles of the Second and Third Cytoplasmic Loops of Bovine Rhodopsin in G Protein Activation*

A. Terakita, Y. Shichida, T. Yamashita, 2000, The Journal of Biological Chemistry.

Chimeric microbial rhodopsins for optical activation of Gs-proteins

K. Sasaki, H. Kandori, Y. Shichida, 2017, Biophysics and physicobiology.

Mechanism of G‐protein Activation by Rhodopsin †

T. Morizumi, Y. Shichida, 2007, Photochemistry and photobiology.

Role of Monomer/Tetramer Equilibrium of Rod Visual Arrestin in the Interaction with Phosphorylated Rhodopsin

Ryo Maeda, T. Oka, Keiichi Kojima, 2023, International journal of molecular sciences.

Structural changes in the Schiff base region of squid rhodopsin upon photoisomerization studied by low-temperature FTIR spectroscopy.

H. Kandori, A. Terakita, Y. Shichida, 2006, Biochemistry.

Formation and Decay of Active Structure in Photoactivated Rhodopsin Probed by Wide-Angle X-Ray Scattering.

Ryo Maeda, T. Oka, Keiichi Kojima, 2019, Journal of Physical Chemistry B.

Functional Interaction between Bovine Rhodopsin and G Protein Transducin*

D. Kojima, A. Terakita, Y. Shichida, 2002, The Journal of Biological Chemistry.

The second cytoplasmic loop of metabotropic glutamate receptor functions at the third loop position of rhodopsin.

A. Terakita, Y. Shichida, T. Yamashita, 2001, Journal of biochemistry.

A rhodopsin exhibiting binding ability to agonist all-trans-retinal.

A. Terakita, Y. Shichida, H. Tsukamoto, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Expression and comparative characterization of Gq‐coupled invertebrate visual pigments and melanopsin

A. Terakita, M. Koyanagi, Y. Shichida, 2008, Journal of neurochemistry.

Internal water molecules of pharaonis phoborhodopsin studied by low-temperature infrared spectroscopy.

N. Kamo, H. Kandori, Y. Shichida, 2001, Biochemistry.

Structures of aspartic acid-96 in the L and N intermediates of bacteriorhodopsin: analysis by Fourier transform infrared spectroscopy.

J. Lanyi, T. Yoshizawa, Y. Shichida, 1992, Biochemistry.

Excited-state dynamics of rhodopsin probed by femtosecond fluorescence spectroscopy

N. Mataga, H. Kandori, Y. Shichida, 2001 .

H. Fujita, T. Sugiyama, H. Ohuchi, 2016, PloS one.

Evolution of Mammalian Opn5 as a Specialized UV-absorbing Pigment by a Single Amino Acid Mutation*

Katsuki Nakamura, H. Fujita, H. Ohuchi, 2014, The Journal of Biological Chemistry.

Recovery of rod-mediated a-wave during light-adaptation in mGluR6-deficient mice

Y. Shichida, H. Imai, Y. Honda, 2006, Vision Research.

Spontaneous activation of visual pigments in relation to openness/closedness of chromophore-binding pocket

K. Yau, R. Frederiksen, M. Cornwall, 2017, eLife.

Molecular Properties of Rhodopsin and Rod Function*

K. Yau, K. Ichikawa, Yingbin Fu, 2007, Journal of Biological Chemistry.

Glutamate Acts as a Partial Inverse Agonist to Metabotropic Glutamate Receptor with a Single Amino Acid Mutation in the Transmembrane Domain*

Takahiro Yamashita, Yoshinori Shichida, Masataka Yanagawa, 2013, The Journal of Biological Chemistry.

Comparative Fluorescence Resonance Energy Transfer Analysis of Metabotropic Glutamate Receptors

Y. Shichida, Masataka Yanagawa, T. Yamashita, 2011, The Journal of Biological Chemistry.

A novel constitutively active mutation in the second cytoplasmic loop of metabotropic glutamate receptor

A. Terakita, Y. Shichida, T. Yamashita, 2004, Journal of neurochemistry.

A Pivot between Helices V and VI near the Retinal-binding Site Is Necessary for Activation in Rhodopsins*

A. Terakita, Y. Shichida, H. Tsukamoto, 2010, The Journal of Biological Chemistry.

Title Spontaneous activation of visual pigments in relation toopenness / closedness of chromophore-binding pocket

K. Yau, R. Frederiksen, M. Cornwall, 2018 .

Identification of a protanomalous chimpanzee by molecular genetic and electroretinogram analyses

A. Mikami, H. Ogawa, S. Koike, 2005, Vision Research.

Title Sexual Difference in Color Sense in a

I. Shimizu, Y. Shichida, H. Imai, 2016 .

Protein changes associated with reprotonation of the Schiff base in the photocycle of Asp96-->Asn bacteriorhodopsin. The MN intermediate with unprotonated Schiff base but N-like protein structure.

J. Lanyi, Y. Shichida, A. Maeda, 1992, The Journal of biological chemistry.

Primary structures of chicken cone visual pigments: vertebrate rhodopsins have evolved out of cone visual pigments.

Y. Fukada, T. Okano, D. Kojima, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Selective activation of G‐protein subtypes by vertebrate and invertebrate rhodopsins

A. Terakita, Y. Shichida, T. Yamashita, 1998, FEBS letters.

Drosophila melanogaster rhodopsin Rh7 is a UV-to-visible light sensor with an extraordinarily broad absorption spectrum

Y. Shichida, N. Iwabe, T. Yamashita, 2017, Scientific Reports.

Rod Visual Pigment Optimizes Active State to Achieve Efficient G Protein Activation as Compared with Cone Visual Pigments*

Ryo Maeda, Keiichi Kojima, Y. Shichida, 2013, The Journal of Biological Chemistry.

Direct observation of the pH-dependent equilibrium between metarhodopsins I and II and the pH-independent interaction of metarhodopsin II with transducin C-terminal peptide.

T. Morizumi, Keita Sato, Y. Shichida, 2010, Biochemistry.

Is chicken green-sensitive cone visual pigment a rhodopsin-like pigment? A comparative study of the molecular properties between chicken green and rhodopsin.

Y. Fukada, Y. Shichida, T. Yoshizawa, 1994, Biochemistry.

Difference in molecular properties between chicken green and rhodopsin as related to the functional difference between cone and rod photoreceptor cells.

Y. Shichida, T. Yoshizawa, Y. Shichida, 1995, Biochemistry.

PHOTORECEPTOR CELL TYPES IN THE RETINA OF VARIOUS VERTEBRATE SPECIES: IMMUNOCYTOCHEMISTRY WITH ANTIBODIES AGAINST RHODOPSIN AND IODOPSIN

Y. Fukada, T. Yoshizawa, Y. Shichida, 1992, Photochemistry and photobiology.

Single-molecule diffusion-based estimation of GPCR activity

M. Ueda, Y. Sako, M. Murata, 2017, bioRxiv.

Title: Single-molecule diffusion-based estimation of ligand effects on G protein-coupled receptors

Y. Shichida, Masataka Yanagawa, T. Yamashita, 2018 .

A new intermediate between lumirhodopsin and metarhodopsin in squid

T. Yoshizawa, Y. Shichida, F. Tokunaga, 1975, FEBS letters.

Synthesis of One Double Bond-Inserted Retinal Analogs and Their Binding Experiments with Opsins: Preparation of Novel Red-Shifted Channelrhodopsin Variants.

Yuka Kobayashi, Y. Shichida, T. Yamashita, 2020, Chemical & pharmaceutical bulletin.

Chromophore Structure in an Inactive State of a Novel Photosensor Protein Opn5L1: Resonance Raman Evidence for the Formation of a Deprotonated Adduct at the 11th Carbon Atom.

M. Mizuno, Y. Mizutani, Keita Sato, 2023, The journal of physical chemistry. B.

Helical rearrangement of photoactivated rhodopsin in monomeric and dimeric forms probed by high-angle X-ray scattering

Ryo Maeda, T. Oka, Keiichi Kojima, 2015, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

Single amino acid residue as a functional determinant of rod and cone visual pigments.

D. Kojima, Y. Shichida, A. Terakita, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Movement of retinal along the visual transduction path.

K. Nakanishi, B. Borhan, Y. Shichida, 2000, Science.

Highly conserved glutamic acid in the extracellular IV-V loop in rhodopsins acts as the counterion in retinochrome, a member of the rhodopsin family.

A. Terakita, Y. Shichida, T. Yamashita, 2000, Proceedings of the National Academy of Sciences of the United States of America.

The hydrogen-bonding network of water molecules and the peptide backbone in the region connecting Asp83, Gly120, and Glu113 in bovine rhodopsin.

H. Kandori, Y. Shichida, A. Terakita, 1998, Biochemistry.

Pigmented and nonpigmented ocelli in the brain vesicle of the ascidian larva

H. Ohtsuki, T. Horie, A. Terakita, 2008, The Journal of comparative neurology.

Convergent mechanism underlying the acquisition of vertebrate scotopic vision.

Keiichi Kojima, Y. Shichida, Masataka Yanagawa, 2024, The Journal of biological chemistry.

Alternative Formation of Red-Shifted Channelrhodopsins: Noncovalent Incorporation with Retinal-Based Enamine-Type Schiff Bases and Mutated Channelopsin.

T. Ishizuka, H. Yawo, Y. Shichida, 2017, Chemical & pharmaceutical bulletin.

Cone visual pigments are present in gecko rod cells.

Y. Fukada, T. Okano, D. Kojima, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Identification of the α-Subunits of Rod and Cone Transducin in Chicken Photoreceptor Cells

Y. Fukada, K. Kokame, T. Yoshizawa, 1993 .

Biochemical and photochemical analyses of retinal proteins in chicken cone cells

Y. Fukada, T. Yoshizawa, Y. Shichida, 1991 .