J. Schilling

发表

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

Scott T. Bates, L. Tedersoo, Nhu H. Nguyen, 2016 .

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing

Xiandong Meng, Feng Chen, Dongwan D. Kang, 2015, PloS one.

Widespread polycistronic transcripts in mushroom-forming fungi revealed by single-molecule long-read mRNA sequencing

Xiandong Meng, Feng Chen, Dongwan D. Kang, 2014, bioRxiv.

High-efficiency methane capture by living fungi and dried fungal hyphae (necromass).

J. Schilling, Feng Jin Liew, 2020, Journal of environmental quality.

Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi

D. Hibbett, I. Grigoriev, E. Master, 2019, The ISME Journal.

Initial white rot type dominance of wood decomposition and its functional consequences in a regenerating tropical dry forest

J. Powers, J. Schilling, A. Ayres, 2015 .

Using MALDI-FTICR-MS Imaging to Track Low-Molecular-Weight Aromatic Derivatives of Fungal Decayed Wood

Mowei Zhou, J. Schilling, Jiwei Zhang, 2021, Journal of fungi.

Using Wood Rot Phenotypes to Illuminate the “Gray” Among Decomposer Fungi

R. Blanchette, B. Held, J. Schilling, 2020, Frontiers in Microbiology.

Fungal functional ecology: bringing a trait‐based approach to plant‐associated fungi

Scott T. Bates, R. Gazis, D. Hibbett, 2019, Biological reviews of the Cambridge Philosophical Society.

Distinct Growth and Secretome Strategies for Two Taxonomically Divergent Brown Rot Fungi

J. Schilling, Gerald N Presley, Gerald N. Presley, 2017, Applied and Environmental Microbiology.

Colocalizing incipient reactions in wood degraded by the brown rot fungus Postia placenta

T. Filley, R. Blanchette, J. Jurgens, 2013 .

Improved pretreatment of lignocellulosic biomass using enzymatically-generated peracetic acid.

U. Tschirner, R. Kazlauskas, S. Duncan, 2011, Bioresource technology.

Bioindication of atmospheric heavy metal deposition in the Southeastern US using the moss Thuidium delicatulum

J. Schilling, M. E. Lehman, 2002 .

Stem-inhabiting fungal communities differ between intact and snapped trees after hurricane Maria in a Puerto Rican tropical dry forest

S. Bloem, P. Kennedy, J. Schilling, 2020 .

Effects of Wood Mixtures on Deterioration By a Filamentous Brown-Rot Fungus

J. Schilling, Adam Norcutt, 2010 .

Forest composition modifies litter dynamics and decomposition in regenerating tropical dry forest

J. Powers, B. Waring, J. Schilling, 2016, Oecologia.

Signature Wood Modifications Reveal Decomposer Community History

Zewei Song, J. Schilling, Feng Jin Liew, 2015, PloS one.

Quantitative PCR for measuring biomass of decomposer fungi in planta

M. Sadowsky, Zewei Song, J. Schilling, 2014 .

Wood decomposition and its role in the forest carbon cycle

C. Trettin, R. Oren, D. Lindner, 2021 .

Bait and scrape: An approach for assessing biofilm microbial communities on organic media used for gas-phase biofiltration

J. Schilling, K. Janni, J. Oliver, 2016 .

Hydroxyl Availability in Aspen Wood After Dilute Acid Pretreatment and Enzymatic Saccharification

S. Duncan, J. Schilling, Han-Seung Yang, 2016 .

Increased Saccharification Yields from Aspen Biomass Upon Treatment with Enzymatically Generated Peracetic Acid

U. Tschirner, R. Kazlauskas, S. Duncan, 2010, Applied biochemistry and biotechnology.

A genomics-informed study of oxalate and cellulase regulation by brown rot wood-degrading fungi.

J. Schilling, Jiwei Zhang, Gerald N Presley, 2016, Fungal genetics and biology : FG & B.

Functional Genomics, Transcriptomics, and Proteomics Reveal Distinct Combat Strategies Between Lineages of Wood-Degrading Fungi With Redundant Wood Decay Mechanisms

S. Purvine, J. Schilling, Jiwei Zhang, 2020, Frontiers in Microbiology.

Reference genes for accurate normalization of gene expression in wood-decomposing fungi.

L. M. Markillie, G. Orr, Matthew J. Gaffrey, 2019, Fungal genetics and biology : FG & B.

Wood-decay type and fungal guild dominance across a North American log transplant experiment

C. Trettin, D. Lindner, N. Fanin, 2022, Fungal Ecology.

Role of carbon source in the shift from oxidative to hydrolytic wood decomposition by Postia placenta.

J. Schilling, Jiwei Zhang, 2017, Fungal genetics and biology : FG & B.

Coarse woody debris decomposition assessment tool: Model development and sensitivity analysis

C. Trettin, D. Lindner, D. Page-Dumroese, 2021, PloS one.

Towards an Understanding of Oxidative Damage in an α-L-Arabinofuranosidase of Trichoderma reesei: a Molecular Dynamics Approach

Mowei Zhou, J. Schilling, Jesús D. Castaño, 2021, Applied Biochemistry and Biotechnology.

Fungal endophytes as priority colonizers initiating wood decomposition

P. Kennedy, Zewei Song, J. Schilling, 2017 .

Functional convergence in the decomposition of fungal necromass in soil and wood.

P. Kennedy, J. Schilling, K. Schreiner, 2019, FEMS microbiology ecology.

Applying trait-function relationships for microbial plant decomposition to predict medium longevity in pollution control biofilters

J. Schilling, J. Oliver, 2016, Applied Microbiology and Biotechnology.

Coupling Secretomics with Enzyme Activities To Compare the Temporal Processes of Wood Metabolism among White and Brown Rot Fungi

S. Purvine, E. Panisko, J. Schilling, 2018, Applied and Environmental Microbiology.

Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola

Baojun Wu, Anna Lipzen, Robert A. Blanchette, 2018, Applied and Environmental Microbiology.

Proteome of the Wood Decay Fungus Fomitopsis pinicola Is Altered by Substrate

D. Hibbett, I. Grigoriev, E. Master, 2022, Microbiology resource announcements.

Experimental nitrogen fertilisation globally accelerates, then slows decomposition of leaf litter.

S. Hobbie, J. Schilling, A. L. Gill, 2021, Ecology letters.

Ecological and functional effects of fungal endophytes on wood decomposition

Lauren C. Cline, P. Kennedy, Jon R. Menke, 2018 .

Oxalate Production and Cation Translocation during Wood Biodegredation by Fungi

J. Schilling, 2006 .

Extraction and translocation of calcium from gypsum during wood biodegradation by oxalate-producing fungi

J. Jellison, J. Schilling, 2007 .

Oxalate regulation by two brown rot fungi decaying oxalate-amended and non-amended wood

J. Jellison, J. Schilling, 2005 .

Fluorescence in situ mRNA hybridization for gene expression detection in a wood decay fungus

Dehong Hu, G. Orr, J. Schilling, 2019, International Biodeterioration & Biodegradation.

Concentrations of Ca and Mg in early stages of sapwood decay in red spruce, eastern hemlock, red maple, and paper birch

Kevin T. Smith, Walter C. Shortle, J. Jellison, 2007 .

Applying trait-function relationships for microbial plant decomposition to predict medium longevity in pollution control biofilters

Jason P. Oliver, J. Schilling, 2016, Applied Microbiology and Biotechnology.

Forest composition modifies litter dynamics and decomposition in regenerating tropical dry forest

J. Powers, B. Waring, J. Schilling, 2016, Oecologia.

Correction: Signature Wood Modifications Reveal Decomposer Community History

Zewei Song, J. Schilling, Feng Jin Liew, 2015, PloS one.

Choice tests and neighbor effects during fungal brown rot of copper- and non-treated wood

J. Schilling, Feng Jin Liew, 2012 .

Using a grass substrate to compare decay among two clades of brown rot fungi

J. Schilling, J. Kaffenberger, 2013, Applied Microbiology and Biotechnology.

A Laccase Gene Reporting System That Enables Genetic Manipulations in a Brown Rot Wood Decomposer Fungus Gloeophyllum trabeum

D. Cullen, J. Schilling, Jiwei Zhang, 2023, Microbiology spectrum.

Using a grass substrate to compare decay among two clades of brown rot fungi

J. Schilling, J. Kaffenberger, 2013, Applied Microbiology and Biotechnology.

Oxidative Damage Control during Decay of Wood by Brown Rot Fungus Using Oxygen Radicals

J. Schilling, Jiwei Zhang, J. Castaño, 2018, Applied and Environmental Microbiology.

Effects of calcium-based materials and iron impurities on wood degradation by the brown rot fungus Serpula lacrymans

J. Schilling, 2009 .

Iron and calcium translocation from pure gypsum and iron-amended gypsum by two brown rot fungi and a white rot fungus

J. Schilling, Kaitlyn M. Bissonnette, 2008 .

Metal Accumulation without Enhanced Oxalate Secretion in Wood Degraded by Brown Rot Fungi

J. Jellison, J. Schilling, 2006, Applied and Environmental Microbiology.

High-performance liquid chromatographic analysis of soluble and total oxalate in Ca- and Mg-amended liquid cultures of three wood decay fungi

J. Jellison, J. Schilling, 2004 .

Early chemical changes during wood decomposition are controlled by fungal communities inhabiting stems at treefall in a tropical dry forest

J. Powers, P. Kennedy, J. Schilling, 2021, Plant and Soil.

Brown Rot-Type Fungal Decomposition of Sorghum Bagasse: Variable Success and Mechanistic Implications

B. Ndimba, J. Schilling, Gerald N Presley, 2018, International journal of microbiology.

Evaluation of colorimetric assays for determination of H2O2in planta during fungal wood decomposition.

J. Schilling, Jiwei Zhang, J. Castaño, 2018, Journal of microbiological methods.

Competition between two wood-degrading fungi with distinct influences on residues.

M. Sadowsky, Zewei Song, J. Schilling, 2012, FEMS microbiology ecology.

Gene Regulation Shifts Shed Light on Fungal Adaption in Plant Biomass Decomposers

K. Silverstein, Melania Figueroa, J. Schilling, 2019, mBio.

Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta

Dehong Hu, G. Orr, Melania Figueroa, 2016, Proceedings of the National Academy of Sciences.

Retracted and Republished from: “Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola”

D. Hibbett, I. Grigoriev, E. Master, 2021, Applied and environmental microbiology.

Distinctive carbon repression effects in the carbohydrate-selective wood decay fungus Rhodonia placenta.

G. Orr, Matthew J. Gaffrey, H. Mitchell, 2022, Fungal genetics and biology : FG & B.

Binderless films from lignin-rich residues of enzymatic saccharification

J. Schilling, Han-Seung Yang, Feng Jin Liew, 2021 .

Lignocellulose modifications by brown rot fungi and their effects, as pretreatments, on cellulolysis.

T. Filley, U. Tschirner, R. Blanchette, 2012, Bioresource technology.

Carbohydrate-hydrolyzing enzyme ratios during fungal degradation of woody and non-woody lignocellulose substrates

S. Duncan, J. Schilling, 2010 .

Toward an assessment of copper bioavailability in treated wood.

J. Schilling, J. Inda, 2010 .

RETRACTED ARTICLE: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi

D. Hibbett, I. Grigoriev, E. Master, 2019, The ISME Journal.

Comparing lignocellulose physiochemistry after decomposition by brown rot fungi with distinct evolutionary origins.

J. Schilling, J. Kaffenberger, 2015, Environmental microbiology.

Harnessing fungi to mitigate CH4 in natural and engineered systems

Jason P. Oliver, J. Schilling, 2018, Applied Microbiology and Biotechnology.

Decoupling direct and indirect effects of temperature on decomposition

T. Crowther, M. Bradford, D. Maynard, 2017 .

Synergy between pretreatment lignocellulose modifications and saccharification efficiency in two brown rot fungal systems

S. Duncan, J. Schilling, Jake Tewalt, 2009, Applied Microbiology and Biotechnology.

Influence of Hyphal Inoculum potential on the Competitive Success of Fungi Colonizing Wood

M. Sadowsky, Zewei Song, J. Schilling, 2015, Microbial Ecology.

Bacterial communities associated with wood rot fungi that use distinct decomposition mechanisms

Benjamin M Hillmann, D. Knights, J. Schilling, 2022, ISME Communications.

Capture of methane by fungi: Evidence from laboratory-scale biofilter and chromatographic isotherm studies

Jason P. Oliver, J. Schilling, 2016 .

Assessment of saccharification efficacy in the cellulase system of the brown rot fungus Gloeophyllum trabeum

J. Schilling, Jake Tewalt, 2010, Applied Microbiology and Biotechnology.

Agar-block microcosms for controlled plant tissue decomposition by aerobic fungi.

J. Schilling, K. Jacobson, 2011, Journal of visualized experiments : JoVE.

A Fungal Secretome Adapted for Stress Enabled a Radical Wood Decay Mechanism

Chia-Feng Tsai, C. Nicora, Joon-Yong Lee, 2021, mBio.

Influence of Hyphal Inoculum potential on the Competitive Success of Fungi Colonizing Wood

M. Sadowsky, Zewei Song, J. Schilling, 2015, Microbial Ecology.

Coarse Woody Debris Decomposition Assessment Tool: Model validation and application

C. Trettin, D. Lindner, D. Page-Dumroese, 2021, PloS one.

Diversity of genomic adaptations to post-fire environment in Pezizales fungi points to a crosstalk between charcoal tolerance and sexual development.

B. Henrissat, Elodie Drula, I. Grigoriev, 2022, The New phytologist.

Using aggregated field collection data and the novel r package fungarium to investigate fungal fire association

J. Schilling, H. J. Simpson, 2021, Mycologia.

Harnessing fungi to mitigate CH4 in natural and engineered systems

Jason P. Oliver, J. Schilling, 2018, Applied Microbiology and Biotechnology.

Fungal functional ecology: bringing a trait‐based approach to plant‐associated fungi

Scott T. Bates, R. Gazis, D. Hibbett, 2019, Biological reviews of the Cambridge Philosophical Society.

Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta

Dehong Hu, G. Orr, Jon R. Menke, 2016, Proceedings of the National Academy of Sciences.

Fine-scale cation dynamics and control by Rhodonia placenta and Pleurotus ostreatus during wood decay

J. Schilling, J. Castaño, Claire E. Anderson, 2023, International Biodeterioration & Biodegradation.

Metabolomics Highlights Different Life History Strategies of White and Brown Rot Wood-Degrading Fungi

Young-Mo Kim, J. Schilling, L. Yang, 2022, mSphere.

Capturing an Early Gene Induction Event during Wood Decay by the Brown Rot Fungus Rhodonia placenta

W. Chrisler, L. M. Markillie, G. Orr, 2022, Applied and environmental microbiology.

RETRACTED ARTICLE: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi

D. Hibbett, I. Grigoriev, E. Master, 2019, The ISME Journal.

Oxidative Damage Control during Decay of Wood by Brown Rot Fungus Using Oxygen Radicals

J. Schilling, Jiwei Zhang, J. Castaño, 2018, Applied and Environmental Microbiology.

Coupling Secretomics with Enzyme Activities To Compare the Temporal Processes of Wood Metabolism among White and Brown Rot Fungi

S. Purvine, E. Panisko, J. Schilling, 2018, Applied and Environmental Microbiology.

Role of carbon source in the shift from oxidative to hydrolytic wood decomposition by Postia placenta.

J. Schilling, Jiwei Zhang, 2017, Fungal genetics and biology : FG & B.

Lignocellulose modifications by brown rot fungi and their effects, as pretreatments, on cellulolysis.

T. Filley, U. Tschirner, R. Blanchette, 2012, Bioresource technology.

Assessing the relative bioavailability of copper to fungi degrading treated wood

J. Schilling, J. Inda, 2011 .

Studying the role of wood-decay fungi in calcium cycling on the Penobscot Experimental Forest: a progress report

Kevin T. Smith, Walter C. Shortle, J. Jellison, 2014 .