S. Bretagne

发表

Comparison of antifungal MICs for yeasts obtained using the EUCAST method in a reference laboratory and the Etest in nine different hospital laboratories.

C. Bonnal, F. Dromer, E. Dannaoui, 2010, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Mixed blood chimerism in T cell-depleted bone marrow transplant recipients: evaluation using DNA polymorphisms.

M. Vidaud, C. Cordonnier, M. Goossens, 1987, Blood.

Improvement of a polymerase chain reaction assay for the detection of Echinococcus multilocularis DNA in faecal samples of foxes.

M. Aubert, S. Bretagne, P. Monnier, 1996, Veterinary parasitology.

Detection of Echinococcus multilocularis DNA in fox faeces using DNA amplification

S. Bretagne, J. Guillou, M. Morand, 1993, Parasitology.

Comparison of two DNA targets for the diagnosis of Toxoplasmosis by real-time PCR using fluorescence resonance energy transfer hybridization probes

U. Reischl, D. Krüger, S. Bretagne, 2003, BMC infectious diseases.

Imported leishmaniasis in travelers: a 7-year retrospective from a Parisian hospital in France

M. Bagot, Nesrine Aissaoui, S. Bretagne, 2021, BMC Infectious Diseases.

Development of two real-time quantitative TaqMan PCR assays to detect circulating Aspergillus fumigatus DNA in serum.

M. Vidaud, D. Vidaud, S. Bretagne, 2001, Journal of microbiological methods.

Difficulties with molecular diagnostic tests for mould and yeast infections: where do we stand?

S. Bretagne, A. Alanio, 2014, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Molecular detection and characterization of fungal pathogens.

S. Bretagne, 2011 .

Real‐time PCR on the first galactomannan‐positive serum sample for diagnosing invasive aspergillosis in liver transplant recipients

F. Botterel, S. Bretagne, P. Ichai, 2008, Transplant infectious disease : an official journal of the Transplantation Society.

Towards a nucleic acid-based diagnosis in clinical parasitology and mycology.

S. Bretagne, Jean‐Marc Costa, 2006, Clinica chimica acta; international journal of clinical chemistry.

Towards a molecular diagnosis of invasive aspergillosis and disseminated candidosis.

S. Bretagne, Jean‐Marc Costa, 2005, FEMS immunology and medical microbiology.

Molecular diagnostics in clinical parasitology and mycology: limits of the current polymerase chain reaction (PCR) assays and interest of the real-time PCR assays.

S. Bretagne, 2003, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Real-Time PCR Coupled with Automated DNA Extraction and Detection of Galactomannan Antigen in Serum by Enzyme-Linked Immunosorbent Assay for Diagnosis of Invasive Aspergillosis

C. Cordonnier, C. Desterke, F. Botterel, 2002, Journal of Clinical Microbiology.

Comparison of serum galactomannan antigen detection and competitive polymerase chain reaction for diagnosing invasive aspergillosis.

C. Rieux, C. Cordonnier, J. M. Costa, 1998, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Cryptococcus neoformans meningitis in kidney transplant recipients: A diagnostic and therapeutic challenge

J. Molina, S. Bretagne, M. Peraldi, 2021, Medical mycology case reports.

Diagnosis of invasive aspergillosis using bronchoalveolar lavage in haematology patients: influence of bronchoalveolar lavage human DNA content on real-time PCR performance

I. Yakoub-Agha, L. Delhaes, E. Dei‐Cas, 2009, European Journal of Clinical Microbiology & Infectious Diseases.

Cytochrome b Gene Quantitative PCR for Diagnosing Plasmodium falciparum Infection in Travelers

O. Cabaret, C. Bories, F. Botterel, 2011, Journal of Clinical Microbiology.

ECIL guidelines for preventing Pneumocystis jirovecii pneumonia in patients with haematological malignancies and stem cell transplant recipients.

H. Einsele, P. Hauser, W. Melchers, 2016, The Journal of antimicrobial chemotherapy.

Incidence and risk factors of Legionella pneumophila pneumonia during anti-tumor necrosis factor therapy: a prospective French study.

F. Tubach, X. Mariette, O. Lortholary, 2013, Chest.

Toxoplasmosis after hematopoietic stem cell transplantation.

E. Deconinck, R. Martino, C. Cordonnier, 2000, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Diagnosis, management and outcome of Candida endocarditis.

M. Wolff, J. Mainardi, I. Podglajen, 2012, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Acquired resistance to echinocandins in Candida albicans: case report and review.

M. Desnos-Ollivier, E. Dannaoui, S. Bretagne, 2007, The Journal of antimicrobial chemotherapy.

Mainly Post-Transplant Factors Are Associated with Invasive Aspergillosis after Allogeneic Stem Cell Transplantation: A Study from the Surveillance des Aspergilloses Invasives en France and Société Francophone de Greffe de Moelle et de Thérapie Cellulaire.

O. Lortholary, C. Cordonnier, S. Bastuji‐Garin, 2019, Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation.

Therapeutic monitoring is necessary for the association itraconazole and efavirenz in a patient with AIDS and disseminated histoplasmosis.

Y. Lévy, F. Botterel, S. Bretagne, 2008, AIDS.

Evaluation of Aspergillus PCR Protocols for Testing Serum Specimens

W. Melchers, J. Loeffler, P. White, 2011, Journal of Clinical Microbiology.

Aspergillus PCR: One Step Closer to Standardization

W. Melchers, J. Loeffler, P. White, 2010, Journal of Clinical Microbiology.

Genotyping of the protozoan pathogen Toxoplasma gondii using high-resolution melting analysis of the repeated B1 gene.

O. Cabaret, S. Bretagne, Jean‐Marc Costa, 2011, Journal of microbiological methods.

Invasive Infections with Nannizziopsis obscura Species Complex in 9 Patients from West Africa, France, 2004–2020

E. Haddad, R. Le Berre, S. Bretagne, 2020, Emerging infectious diseases.

Species-Specific Immunological Reactivities Depend on the Cell-Wall Organization of the Two Aspergillus, Aspergillus fumigatus and A. flavus

A. Beaussart, J. Latgé, V. Aimanianda, 2021, Frontiers in Cellular and Infection Microbiology.

Revision and Update of the Consensus Definitions of Invasive Fungal Disease From the European Organization for Research and Treatment of Cancer and the Mycoses Study Group Education and Research Consortium

J. Perfect, H. Masur, A. Caliendo, 2019, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

New clinical algorithm including fungal biomarkers to better diagnose probable invasive pulmonary aspergillosis in ICU

L. Millon, H. Winiszewski, G. Piton, 2021, Annals of Intensive Care.

Aspergillus Polymerase Chain Reaction: Systematic Review of Evidence for Clinical Use in Comparison With Antigen Testing

J. Wingard, J. Löffler, P. White, 2015, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Primary diagnostic approaches of invasive aspergillosis--molecular testing.

S. Bretagne, 2011, Medical mycology.

Advances and Prospects for Molecular Diagnostics of Fungal Infections

S. Bretagne, 2010, Current infectious disease reports.

Verruculogen associated with Aspergillus fumigatus hyphae and conidia modifies the electrophysiological properties of human nasal epithelial cells

M. Delaforge, C. Cordonnier, O. Puel, 2007, BMC Microbiology.

Metabolic detoxification pathways for 5-methoxy-sterigmatocystin in primary tracheal epithelial cells

M. Delaforge, O. Puel, O. Cabaret, 2014, Xenobiotica; the fate of foreign compounds in biological systems.

The Fungal PCR Initiative's evaluation of in-house and commercial Pneumocystis jirovecii qPCR assays: Toward a standard for a diagnostics assay.

W. Melchers, F. Hagen, J. Loeffler, 2019, Medical mycology.

ECIL guidelines for the prevention, diagnosis and treatment of BK polyomavirus-associated haemorrhagic cystitis in haematopoietic stem cell transplant recipients

H. Einsele, L. Pagano, M. Aljurf, 2017, The Journal of antimicrobial chemotherapy.

Outcomes associated with amphotericin B lipid complex (ABLC) prophylaxis in high-risk liver transplant patients.

D. Samuel, F. Saliba, R. Adam, 2013, Medical mycology.

Fungal infections after liver transplantation: outcomes and risk factors revisited in the MELD era

D. Samuel, F. Saliba, R. Adam, 2013, Clinical transplantation.

Circulating Aspergillus fumigatus DNA Is Quantitatively Correlated to Galactomannan in Serum

S. Bretagne, A. Alanio, A. Bergeron, 2017, Front. Microbiol..

Antifungal pre-emptive strategy for high-risk neutropenic patients: why the story is still ongoing.

C. Cordonnier, S. Bretagne, A. Alanio, 2014, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Serum Aspergillus galactomannan antigen testing by sandwich ELISA: practical use in neutropenic patients.

J. Latgé, C. Cordonnier, S. Bretagne, 1997, The Journal of infection.

Hepatitis C virus infection can mimic type 1 (antinuclear antibody positive) autoimmune chronic active hepatitis.

J. Pawlotsky, J. Duval, E. Zafrani, 1993, Gut.

Lichen planus and hepatitis C virus--related chronic active hepatitis.

J. Pawlotsky, J. Duval, D. Dhumeaux, 1994, Archives of dermatology.

Cutaneous Invasive Aspergillosis: Retrospective Multicenter Study of the French Invasive-Aspergillosis Registry and Literature Review

O. Chosidow, O. Lortholary, N. Ortonne, 2015, Medicine.

Early diagnosis and monitoring of mucormycosis by detection of circulating DNA in serum: retrospective analysis of 44 cases collected through the French Surveillance Network of Invasive Fungal Infections (RESSIF).

F. Grenouillet, L. Millon, F. Morio, 2016, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Variation in copy number of the 28S rDNA of Aspergillus fumigatus measured by droplet digital PCR and analog quantitative real-time PCR.

S. Bretagne, A. Alanio, Aude Sturny-Leclère, 2016, Journal of microbiological methods.

Microsatellite Markers for Typing Aspergillus fumigatus Isolates

J. Humbert, E. Delabesse, S. Bretagne, 1998, Journal of Clinical Microbiology.

Evaluation of a New Histoplasma spp. Quantitative RT-PCR Assay

M. Dougados, C. Bonnal, F. Dromer, 2021, The Journal of Molecular Diagnostics.

Evaluation of a new Histoplasma spp. reverse transcriptase quantitative PCR assay.

C. Bonnal, F. Dromer, Marion Benazra, 2021, The Journal of molecular diagnostics : JMD.

In Vitro and In Vivo Efficacy of a Novel and Long-Acting Fungicidal Azole, PC1244, on Aspergillus fumigatus Infection

D. Kelly, S. Kelly, A. Chowdhary, 2018, Antimicrobial Agents and Chemotherapy.

In Vitro and In Vivo Efficacy of a Novel and Long Acting Fungicidal Azole,

D. Kelly, A. Chowdhary, Kazuhiro Ito, 2018 .

Title 1 In Vitro and In Vivo Efficacy of a Novel and Long Acting Fungicidal Azole , 2 PC 1244 on Aspergillus fumigatus Infection 3 4

D. Kelly, A. Chowdhary, M. Fisher, 2018 .

Lack of Evidence of Heterozygosity for Cystic Fibrosis as a Risk Factor for Invasive Aspergillosis in Haematological Patients

E. Girodon, C. Cordonnier, S. Bretagne, 1999, European Journal of Clinical Microbiology and Infectious Diseases.

Global guideline for the diagnosis and management of mucormycosis: an initiative of the European Confederation of Medical Mycology in cooperation with the Mycoses Study Group Education and Research Consortium.

H. Badali, S. Seyedmousavi, Nina Singh, 2019, The Lancet. Infectious diseases.

ECMM CandiReg—A ready to use platform for outbreaks and epidemiological studies

P. Hamal, J. Meis, N. Gow, 2019, Mycoses.

Azole Preexposure Affects the Aspergillus fumigatus Population in Patients

S. Brisse, C. Cordonnier, O. Cabaret, 2012, Antimicrobial Agents and Chemotherapy.

Multicenter Collaborative Study for Standardization of Candida albicans Genotyping Using a Polymorphic Microsatellite Marker

F. Grenouillet, D. MacCallum, P. Sampaio, 2010, Journal of Clinical Microbiology.

Microsatellite polymorphism in the promoter sequence of the elongation factor 3 gene of Candida albicans as the basis for a typing system

J. M. Costa, R. Calderone, S. Bretagne, 1997, Journal of clinical microbiology.

Risk factors associated with COVID-19-associated pulmonary aspergillosis in ICU patients: a French multicentric retrospective cohort

A. Mebazaa, B. Plaud, É. Azoulay, 2020, Clinical Microbiology and Infection.

Use of Real-Time PCR To Process the First Galactomannan-Positive Serum Sample in Diagnosing Invasive Aspergillosis

R. Piarroux, F. Grenouillet, L. Millon, 2005, Journal of Clinical Microbiology.

Fungal Infections of the CNS

A. Beauvais, J. Latgé, F. Chrétien, 2020, Infections of the Central Nervous System.

Helminth Infections of the CNS

M. Le Dudal, G. Jouvion, S. Bretagne, 2020 .

Degradation of fungal DNA in formalin-fixed paraffin-embedded sinus fungal balls hampers reliable sequence-based identification of fungi.

N. Abermil, J. Papon, O. Cabaret, 2011, Medical mycology.

ESCMID Fungal Infection Study Group (EFISG) evaluation 3

C. Ura, J. Loeffler, O. Lortholary, 2010 .

Epidemiological trends in invasive aspergillosis in France: the SAIF network (2005-2007).

B. Lebeau, F. Dromer, B. Coignard, 2011, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

The good use of antifungal drugs in the treatment of invasives candidosis and aspergillosis

S. Bretagne, A. Hulin, Y. Bézie, 2005 .

COVID-19-Associated Pulmonary Aspergillosis, Fungemia, and Pneumocystosis in the Intensive Care Unit: a Retrospective Multicenter Observational Cohort during the First French Pandemic Wave

C. Bonnal, F. Dromer, C. Cassagne, 2021, Microbiology spectrum.

Primary in vitro culture of porcine tracheal epithelial cells in an air-liquid interface as a model to study airway epithelium and Aspergillus fumigatus interactions.

É. Allaire, C. Cordonnier, O. Cabaret, 2010, Medical mycology.

Phagocytosis of Aspergillus fumigatus conidia by primary nasal epithelial cells in vitro

C. Cordonnier, E. Escudier, A. Coste, 2008, BMC Microbiology.

Aspergillus fumigatus causes in vitro electrophysiological and morphological modifications in human nasal epithelial cells.

C. Cordonnier, E. Escudier, A. Coste, 2002, Histology and histopathology.

Early detection of Toxoplasma infection by molecular monitoring of Toxoplasma gondii in peripheral blood samples after allogeneic stem cell transplantation.

H. Einsele, R. Martino, C. Cordonnier, 2005, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Continuous increase of Trichophyton tonsurans as a cause of tinea capitis in the urban area of Paris, France: a 5‐year‐long study

M. Bagot, M. Picat, S. Bretagne, 2016, Medical mycology.

Transient aspergillus antigenaemia: think of milk

S. Bretagne, J. Gangneux, V. Gandemer, 2002, The Lancet.

Active Surveillance Program to Increase Awareness on Invasive Fungal Diseases: the French RESSIF Network (2012 to 2018)

L. Millon, F. Dromer, V. Robert, 2022, mBio.

MixInYeast: A Multicenter Study on Mixed Yeast Infections

H. Badali, A. Barać, P. Hamal, 2020, Journal of fungi.

Recent Exposure to Caspofungin or Fluconazole Influences the Epidemiology of Candidemia: a Prospective Multicenter Study Involving 2,441 Patients

F. Dromer, M. Desnos-Ollivier, O. Lortholary, 2010, Antimicrobial Agents and Chemotherapy.

Invasive aspergillosis due to Aspergillus section Usti: a multicenter retrospective study.

P. Le Pape, R. Zbinden, C. Bonnal, 2020, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Failure of voriconazole therapy due to acquired azole resistance in Aspergillus fumigatus in a kidney transplant recipient with chronic necrotizing aspergillosis

O. Lortholary, B. Pilmis, É. Catherinot, 2018, American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.

Bacterial, viral and parasitic enteric pathogens associated with acute diarrhea in hospitalized children from northern Jordan.

M. Bougnoux, N. Strockbine, S. Bretagne, 2000, FEMS immunology and medical microbiology.

Anti-Saccharomyces cerevisiae Immunogloblin G and Immunoglobulin A antibodies are associated with systemic inflammation and advanced disease in hidradenitis suppurativa.

A. Smahi, F. Tubach, F. Derouin, 2020, The Journal of allergy and clinical immunology.

Specimens in Whole-Blood Aspergillus fumigatus Critical Stages of Extracting DNA from

W. Melchers, J. Loeffler, P. White, 2014 .

Aerosolized liposomal amphotericin B: prediction of lung deposition, in vitro uptake and cytotoxicity.

G. Barratt, N. Tsapis, O. Cabaret, 2012, International journal of pharmaceutics.

No Impact of Fluconazole to Echinocandins Replacement as First-Line Therapy on the Epidemiology of Yeast Fungemia (Hospital-Driven Active Surveillance, 2004–2017, Paris, France)

F. Dromer, M. Desnos-Ollivier, O. Lortholary, 2021, Frontiers in Medicine.

Longer incubation times for yeast fungemia: importance for presumptive treatment.

O. Lortholary, T. Ancelle, A. Paugam, 2014, Diagnostic microbiology and infectious disease.

Pneumocystis jirovecii pneumonia: still a concern in patients with haematological malignancies and stem cell transplant recipients.

H. Einsele, P. Hauser, W. Melchers, 2016, The Journal of antimicrobial chemotherapy.

Azole Resistance in Aspergillus fumigatus—Current Epidemiology and Future Perspectives

C. Cordonnier, S. Bretagne, A. Alanio, 2011 .

Parasitic Infections

S. Bretagne, N. Klimko, 2020, Hematologic Malignancies.

Aspergillus endocarditis in the era of new antifungals: major role for antigen detection.

J. Mainardi, O. Lortholary, M. Bougnoux, 2013, The Journal of infection.

Different repartition of the cryptic species of black aspergilli according to the anatomical sites in human infections, in a French University hospital.

S. Bretagne, A. Alanio, D. García-Hermoso, 2021, Medical mycology.

Analysis of Microsatellite Markers ofCandida albicans Used for Rapid Typing

C. Desterke, F. Botterel, S. Bretagne, 2001, Journal of Clinical Microbiology.

Candida albicans outbreak in a neurosurgical intensive care unit.

S. Bretagne, A. Rogues, J. Gachie, 2007, The Journal of hospital infection.

Genotyping Echinococcus multilocularis in Human Alveolar Echinococcosis Patients: An EmsB Microsatellite Analysis

L. Millon, J. Bart, S. Bresson‐Hadni, 2020, Pathogens.

Toxoplasma Infection of the CNS

H. Adle-Biassette, S. Bretagne, C. Keohane, 2020 .

In vitro susceptibility testing of Candida and Aspergillus spp. to voriconazole and other antifungal agents using Etest: results of a French multicentre study.

R. Grillot, M. Mallié, J. Bastide, 2005, International journal of antimicrobial agents.

High diversity of non‐sporulating moulds in respiratory specimens of immunocompromised patients: should all the species be reported when diagnosing invasive aspergillosis?

C. Cordonnier, O. Cabaret, S. Bretagne, 2015, Mycoses.

Typing Candida Species Using Microsatellite Length Polymorphism and Multilocus Sequence Typing.

M. Desnos-Ollivier, S. Bretagne, D. García-Hermoso, 2016, Methods in molecular biology.

Candidoses et levuroses diverses

M. Develoux, S. Bretagne, 2005 .

Mutations in the fks1 Gene in Candida albicans, C. tropicalis, and C. krusei Correlate with Elevated Caspofungin MICs Uncovered in AM3 Medium Using the Method of the European Committee on Antibiotic Susceptibility Testing

F. Dromer, M. Desnos-Ollivier, E. Dannaoui, 2008, Antimicrobial Agents and Chemotherapy.

Molecular Demonstration of a Pneumocystis Outbreak in Stem Cell Transplant Patients: Evidence for Transmission in the Daycare Center

C. Cordonnier, F. Botterel, C. Angebault, 2017, Front. Microbiol..

Copy Number Variation of Mitochondrial DNA Genes in Pneumocystis jirovecii According to the Fungal Load in BAL Specimens

Marion Benazra, M. J. Buitrago, S. Bretagne, 2016, Front. Microbiol..

Impact of invasive fungal disease on the chemotherapy schedule and event-free survival in acute leukemia patients who survived fungal disease: a case-control study

C. Cordonnier, S. Bastuji‐Garin, F. Botterel, 2011, Haematologica.

Clonal Population of Flucytosine-Resistant Candida tropicalis from Blood Cultures, Paris, France

F. Dromer, V. Robert, M. Desnos-Ollivier, 2008, Emerging infectious diseases.

Lack of Toxoplasma gondii DNA in muscles of patients with inflammatory myopathy and increased anti‐Toxoplasma antibodies

M. Vidaud, F. Authier, R. Gherardi, 1994, Muscle & nerve.

Azole Susceptibility Profiles of More than 9,000 Clinical Yeast Isolates Belonging to 40 Common and Rare Species

F. Dromer, M. Desnos-Ollivier, O. Lortholary, 2021, Antimicrobial Agents and Chemotherapy.

Isavuconazole MIC distribution of 29 yeast species responsible for invasive infections (2015-2017).

F. Dromer, M. Desnos-Ollivier, O. Lortholary, 2019, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Microsatellite Marker Analysis as a Typing System for Candida glabrata

F. Botterel, S. Bretagne, J. Gantier, 2005, Journal of Clinical Microbiology.

Molecular Identification of Zygomycetes from Culture and Experimentally Infected Tissues

F. Dromer, O. Lortholary, E. Dannaoui, 2006, Journal of Clinical Microbiology.

Anti-fungal activity of a novel triazole, PC1244, against emerging azole-resistant Aspergillus fumigatus and other species of Aspergillus

A. Chowdhary, J. Meis, Kazuhiro Ito, 2019, The Journal of antimicrobial chemotherapy.

Candida spp. with Acquired Echinocandin Resistance, France, 2004–2010

F. Grenouillet, F. Dromer, M. Desnos-Ollivier, 2012, Emerging infectious diseases.

In Vitro and In Vivo Antifungal Profile of a Novel and Long-Acting Inhaled Azole, PC945, on Aspergillus fumigatus Infection

D. Kelly, S. Kelly, Kazuhiro Ito, 2017, Antimicrobial Agents and Chemotherapy.

inhaled azole , 2 PC 945 , on Aspergillus fumigatus infection 3 4 5

D. Kelly, S. Kelly, Kazuhiro Ito, 2017 .

Comparison of Microsatellite Length Polymorphism and Multilocus Sequence Typing for DNA-Based Typing of Candida albicans

F. Dromer, M. Desnos-Ollivier, O. Cabaret, 2007, Journal of Clinical Microbiology.

COVID-19-associated mixed mold infection: A case report of aspergillosis and mucormycosis and a literature review

A. Mebazaa, B. Soyer, B. Chousterman, 2021, Journal of Medical Mycology.

The presence of Pneumocystis jirovecii in critically ill patients with COVID-19

B. Mégarbane, S. Voicu, S. Bretagne, 2020, Journal of Infection.

Recovery of a triazole-resistant Aspergillus fumigatus in respiratory specimen of COVID-19 patient in ICU – A case report

É. Azoulay, S. Bretagne, A. Alanio, 2020, Medical Mycology Case Reports.

Prevalence of putative invasive pulmonary aspergillosis in critically ill patients with COVID-19

B. Mégarbane, S. Bretagne, A. Alanio, 2020, The Lancet Respiratory Medicine.

High prevalence of putative invasive pulmonary aspergillosis in critically ill COVID-19 patients

B. Mégarbane, S. Bretagne, A. Alanio, 2020, medRxiv.

Prevention of nosocomial fungal infection: the French approach.

B. Lebeau, R. Grillot, F. Derouin, 2002, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

A retrospective series of gut aspergillosis in haematology patients.

A. Vekhoff, A. Thiébaut, O. Reman, 2011, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Correlation between galactomannan antigen levels in serum and neutrophil counts in haematological patients with invasive aspergillosis.

C. Cordonnier, S. Bastuji‐Garin, F. Botterel, 2009, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Outcome of Renal Transplantation in Eight Patients with Candida sp. Contamination of Preservation Fluid

K. Dahan, P. Grimbert, F. Botterel, 2008, American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.

Yeast contamination of kidney, liver and cardiac preservation solutions before graft: need for standardisation of microbial evaluation.

P. Grimbert, P. Legrand, F. Botterel, 2010, The Journal of hospital infection.

Evidence that graft-site candidiasis after kidney transplantation is acquired during organ recovery: a multicenter study in France.

F. Dromer, M. Mamzer-Bruneel, M. Desnos-Ollivier, 2009, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Analytical Comparison of In Vitro-Spiked Human Serum and Plasma for PCR-Based Detection of Aspergillus fumigatus DNA: a Study by the European Aspergillus PCR Initiative

W. Melchers, J. Springer, J. Loeffler, 2015, Journal of Clinical Microbiology.

Failure To Detect Circulating Aspergillus Markers in a Patient with Chronic Granulomatous Disease and Invasive Aspergillosis

J. Curfs, P. Verweij, S. Bretagne, 2000, Journal of Clinical Microbiology.

New findings and key questions in hematopoietic stem cell transplantation.

C. Cordonnier, F. Botterel, S. Bretagne, 2005, Medical mycology.

Secondary antifungal prophylaxis with voriconazole to adhere to scheduled treatment in leukemic patients and stem cell transplant recipients

C. Cordonnier, S. Bretagne, P. Ribaud, 2004, Bone Marrow Transplantation.

Testing Serum Specimens Evaluation of Aspergillus PCR Protocols for

J. Loeffler, C. Mengoli, S. Bretagne, 2014 .

Génotypage d'Aspergillus fumigatus : principes des méthodes et applications

S. Bretagne, E. Bart-Delabesse, 2000 .

Detection of Aspergillus DNA in bronchoalveolar lavage fluid of AIDS patients by the polymerase chain reaction.

J. M. Costa, S. Bretagne, E. Bart-Delabesse, 1997, European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology.

[Mycologic surveillance of the environment for preventive invasive aspergillosis. Proposals for standardization of the methodologies and implementation].

F. Derouin, C. Cordonnier, E. Chachaty, 2002, Presse medicale.

Performance evaluation of multiplex PCR including Aspergillus—not so simple!

S. Bretagne, A. Alanio, 2017, Medical mycology.

Candida spp. with Acquired Echinocandin Resistance, France,

F. Grenouillet, F. Dromer, M. Desnos-Ollivier, 2012 .

Combination of Mycological Criteria: a Better Surrogate to Identify COVID-19-Associated Pulmonary Aspergillosis Patients and Evaluate Prognosis?

A. Mebazaa, B. Plaud, É. Azoulay, 2022, Journal of clinical microbiology.

Aspergillus flavus malignant external otitis in a diabetic patient: case report and literature review

Y. Yazdanpanah, M. Wassef, N. Argy, 2020, Infection.

Optimizing efficacy of Amphotericin B through nanomodification

G. Barratt, S. Bretagne, 2007, International journal of nanomedicine.

Worrisome trends in incidence and mortality of candidemia in intensive care units (Paris area, 2002–2010)

M. Wolff, F. Dromer, C. Renaudat, 2014, Intensive Care Medicine.

Low prevalence of resistance to azoles in Aspergillus fumigatus in a French cohort of patients treated for haematological malignancies.

C. Cordonnier, F. Botterel, S. Bretagne, 2011, The Journal of antimicrobial chemotherapy.

Cutaneous phaeohyphomycosis caused by Veronaea bothryosa in a liver transplant recipient successfully treated with itraconazole.

C. Duvoux, C. Hézode, S. Bretagne, 1999, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Invasive Fusarium infections: a retrospective survey of 31 cases. The French 'Groupe d'Etudes des Mycoses Opportunistes' GEMO.

B. Lebeau, R. Grillot, J. Dupouy-Camet, 1997, Journal of medical and veterinary mycology : bi-monthly publication of the International Society for Human and Animal Mycology.

Molecular Identification of Black-Grain Mycetoma Agents

F. Dromer, M. Desnos-Ollivier, O. Lortholary, 2006, Journal of Clinical Microbiology.

From phaeohyphomycosis to disseminated chromoblastomycosis: A retrospective study of infections caused by dematiaceous fungi.

G. Jouvion, S. Bretagne, A. Bertolotti, 2018, Medecine et maladies infectieuses.

[Frequency of plantar dermatophytosis. A retrospective study 2002-2003].

P. Wolkenstein, O. Chosidow, J. Revuz, 2007, Annales de dermatologie et de venereologie.

ECIL guidelines for the diagnosis of Pneumocystis jirovecii pneumonia in patients with haematological malignancies and stem cell transplant recipients.

H. Einsele, P. Hauser, W. Melchers, 2016, The Journal of antimicrobial chemotherapy.

[Epidemiology of tinea capitis. Five-year retrospective study in three hospitals in the Val de Marne].

F. Botterel, S. Bretagne, A. Pérignon, 2006, Presse medicale.

Emergence of Difficult-to-Treat Tinea Corporis Caused by Trichophyton mentagrophytes Complex Isolates, Paris, France

M. Bagot, S. Bretagne, A. Alanio, 2022, Emerging infectious diseases.

MALDI-TOF Mass Spectrometry Online Identification of Trichophyton indotineae Using the MSI-2 Application

R. Piarroux, C. Bonnal, A. Normand, 2022, Journal of Fungi.

Investigating Clinical Issues by Genotyping of Medically Important Fungi: Why and How?

M. Desnos-Ollivier, S. Bretagne, A. Alanio, 2017, Clinical Microbiology Reviews.

Optimizing ef ﬁ cacy of Amphotericin B through nanomodi ﬁ cation

G. Barratt, S. Bretagne, 2007 .

Usefulness of genotyping with microsatellite markers to investigate hospital-acquired invasive aspergillosis.

C. Cordonnier, S. Bretagne, E. Bart-Delabesse, 1999, The Journal of hospital infection.

Aspergillus Polymerase Chain Reaction-An Update on Technical Recommendations, Clinical Applications, and Justification for Inclusion in the Second Revision of the EORTC/MSGERC Definitions of Invasive Fungal Disease.

A. Caliendo, J. Wingard, J. Loeffler, 2021, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Detection of Circulating Mucorales DNA in Critically Ill Burn Patients: Preliminary Report of a Screening Strategy for Early Diagnosis and Treatment.

A. Mebazaa, M. Mimoun, M. Legrand, 2016, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Molecular Detection and Identification of Zygomycetes Species from Paraffin-Embedded Tissues in a Murine Model of Disseminated Zygomycosis: a Collaborative European Society of Clinical Microbiology and Infectious Diseases (ESCMID) Fungal Infection Study Group (EFISG) Evaluation

David W. Denning, Patrick Schwarz, Jacques Bille, 2010, Journal of Clinical Microbiology.

Failure of multiplex meningitis/encephalitis (ME) NAT during cryptococcal meningitis in solid organ recipients

O. Lortholary, B. Pilmis, A. Le Monnier, 2020, Transplant infectious disease : an official journal of the Transplantation Society.

Frequency of intravascular catheter colonization by Malassezia spp. in adult patients

P. Legrand, J. Guillot, F. Botterel, 2004, Mycoses.

Fatal primary cutaneous aspergillosis in a bone marrow transplant recipient: nosocomial acquisition in a laminar-air flow room.

C. Cordonnier, S. Bretagne, M. Kuentz, 1997, The Journal of hospital infection.

Diagnosis of Pneumocystis jirovecii Pneumonia: Role of β-D-Glucan Detection and PCR

S. Bretagne, A. Alanio, 2014, Current Fungal Infection Reports.

Association between circulating DNA, serum (1->3)-β-D-glucan, and pulmonary fungal burden in Pneumocystis pneumonia.

C. Cordonnier, O. Cabaret, F. Botterel, 2012, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Correlation Between Pneumocystis jirovecii Mitochondrial Genotypes and High and Low Fungal Loads Assessed by Single Nucleotide Primer Extension Assay and Quantitative Real‐Time PCR

L. Millon, C. Cordonnier, O. Cabaret, 2015, Journal of Eukaryotic Microbiology.

Nosocomial Dermatitis Caused by Dermanyssus gallinae

C. Bories, F. Botterel, S. Bretagne, 2008, Infection Control & Hospital Epidemiology.

Detection of Aspergillus species DNA in bronchoalveolar lavage samples by competitive PCR

M. Vidaud, C. Cordonnier, J. M. Costa, 1995, Journal of clinical microbiology.

A cell impedance‐based real‐time in vitro assay to assess the toxicity of amphotericin B formulations

G. Barratt, S. Bretagne, A. Alanio, 2017, Toxicology and applied pharmacology.

Black grain mycetoma caused by Leptosphaeria tompkinsii.

M. Desnos-Ollivier, M. Develoux, S. Bretagne, 2011, Medical mycology.

Multicenter Outbreak of Infections by Saprochaete clavata, an Unrecognized Opportunistic Fungal Pathogen

F. Jardin, C. Ravel, H. Lanic, 2014, mBio.

Comparison of Restriction Fragment Length Polymorphism, Microsatellite Length Polymorphism, and Random Amplification of Polymorphic DNA Analyses for FingerprintingAspergillus fumigatus Isolates

J. Latgé, A. van Belkum, W. V. van Leeuwen, 2001, Journal of Clinical Microbiology.

High prevalence of triazole resistance in Aspergillus fumigatus, especially mediated by TR/L98H, in a French cohort of patients with cystic fibrosis.

P. Le Pape, F. Morio, S. Bretagne, 2012, The Journal of antimicrobial chemotherapy.

Interlaboratory reproducibility of a microsatellite-based typing assay for Aspergillus fumigatus through the use of allelic ladders: proof of concept.

J. Meis, M. Anderson, S. Balajee, 2009, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Uniform distribution of three Candida albicans microsatellite markers in two French ICU populations supports a lack of nosocomial cross-contamination

F. Botterel, S. Bretagne, Jean‐Marc Costa, 2006, BMC infectious diseases.

Empirical versus preemptive antifungal therapy for high-risk, febrile, neutropenic patients: a randomized, controlled trial.

A. Vekhoff, L. Adès, C. Cordonnier, 2009, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[Sinonasal fungal infections are not exclusively due to mucorales and Aspergillus!].

H. Adle-Biassette, F. Chrétien, G. Jouvion, 2016, Annales de pathologie.

Absence of Fungal Spore Internalization by Bronchial Epithelium in Mouse Models Evidenced by a New Bioimaging Approach and Transmission Electronic Microscopy.

F. de Chaumont, J. Olivo-Marin, F. Dromer, 2015, The American journal of pathology.

Utility of adding Pneumocystis jirovecii DNA detection in nasopharyngeal aspirates in immunocompromised adult patients with febrile pneumonia

S. Bretagne, A. Alanio, J. Menotti, 2014, Medical mycology.

Iterative breakthrough invasive aspergillosis due to TR(34)/L98H azole‐resistant Aspergillus fumigatus and Emericella sublata in a single hematopoietic stem cell transplant patient

S. Bretagne, A. Alanio, D. García-Hermoso, 2014, Transplant infectious disease : an official journal of the Transplantation Society.

Azole-Resistant Aspergillus fumigatus Isolate with the TR34/L98H Mutation in Both a Fungicide-Sprayed Field and the Lung of a Hematopoietic Stem Cell Transplant Recipient with Invasive Aspergillosis

F. Grenouillet, G. Reboux, L. Millon, 2014, Journal of Clinical Microbiology.

Recipient with Invasive Aspergillosis a Hematopoietic Stem Cell Transplant a Fungicide-Sprayed Field and the Lung of Both Isolate with the TR34/L98H Mutation in Azole-Resistant Aspergillus fumigatus

F. Grenouillet, S. Bretagne, D. García-Hermoso, 2014 .

Dual Invasive Infection with Phaeoacremonium parasiticum and Paraconiothyrium cyclothyrioides in a Renal Transplant Recipient: Case Report and Comprehensive Review of the Literature of Phaeoacremonium Phaeohyphomycosis

D. Glotz, S. Gallien, S. Bretagne, 2015, Journal of Clinical Microbiology.

Galactomannan and polymerase chain reaction for the diagnosis of primary digestive aspergillosis in a patient with acute myeloid leukaemia.

C. Cordonnier, J. M. Costa, S. Bretagne, 2001, The Journal of infection.

Performance and economic evaluation of the molecular detection of pathogens for patients with severe infections: the EVAMICA open-label, cluster-randomised, interventional crossover trial

C. Brun-Buisson, I. Durand-zaleski, J. Pottecher, 2017, Intensive Care Medicine.

Breakthrough invasive fungal disease in patients receiving posaconazole primary prophylaxis: a 4-year study.

R. Porcher, É. Azoulay, G. Socié, 2014, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Challenges in microbiological diagnosis of invasive Aspergillus infections

S. Bretagne, A. Alanio, 2017, F1000Research.

Empirical Versus Pre-Emptive Antifungal Therapy in High-Risk Febrile Neutropenic Patients: A Prospective Randomized Study.

A. Vekhoff, S. Leprêtre, L. Adès, 2006 .

A Case of Enterocytozoon bieneusi Infection in an HIV-Negative Renal Transplant Recipient

J. Tran van Nhieu, J. Nhieu, P. Grimbert, 2000, European Journal of Clinical Microbiology and Infectious Diseases.

[Prevalence of Enterocytozoon bieneusi spores in the stool of AIDS patients and African children not infected by HIV].

M. Develoux, S. Bretagne, F. Foulet, 1993, Bulletin de la Societe de pathologie exotique.

Differentiation between Isolates of Aspergillus fumigatus from Breeding Turkeys and Their Environment by Genotyping with Microsatellite Markers

C. Desterke, J. Guillot, S. Bretagne, 2003, Journal of Clinical Microbiology.

Evolution of the environmental contamination by thermophilic fungi in a turkey confinement house in France.

J. Guillot, S. Bretagne, R. Chermette, 2006, Poultry science.

Molecular typing of Aspergillus fumigatus.

J. Latgé, P. Verweij, S. Bretagne, 2000 .

Importance of Operational Factors in the Reproducibility of Aspergillus Galactomannan Enzyme Immune Assay

S. Bretagne, A. Alanio, M. Tabouret, 2015, PloS one.

Performance of Serum Biomarkers for the Early Detection of Invasive Aspergillosis in Febrile, Neutropenic Patients: A Multi-State Model

B. Farley, A. Vekhoff, S. Leprêtre, 2013, PloS one.

Comparison of Nonculture Blood-Based Tests for Diagnosing Invasive Aspergillosis in an Animal Model

W. Melchers, B. Wickes, J. Loeffler, 2016, Journal of Clinical Microbiology.

Clinical Performance of Aspergillus PCR for Testing Serum and Plasma: a Study by the European Aspergillus PCR Initiative

W. Melchers, J. Springer, J. Loeffler, 2015, Journal of Clinical Microbiology.

New Short Tandem Repeat-Based Molecular Typing Method for Pneumocystis jirovecii Reveals Intrahospital Transmission between Patients from Different Wards

J. Molina, E. Raffoux, S. Bretagne, 2015, PloS one.

Toxoplasmosis after hematopoietic stem transplantation. Report of a 5-year survey from the Infectious Diseases Working Party of the European Group for Blood and Marrow Transplantation

E. Deconinck, R. Martino, C. Cordonnier, 2000, Bone Marrow Transplantation.

Prospective study of toxoplasma reactivation by polymerase chain reaction in allogeneic stem‐cell transplant recipients

C. Cordonnier, S. Bretagne, J.-M. Costa, 2000, Transplant infectious disease : an official journal of the Transplantation Society.

Detection of Toxoplasma gondii by competitive DNA amplification of bronchoalveolar lavage samples.

M. Vidaud, J. M. Costa, S. Bretagne, 1993, The Journal of infectious diseases.

Prospective comparison of (1,3)-beta-D-glucan detection using colorimetric and turbidimetric assays for diagnosing invasive fungal disease.

S. Bretagne, A. Alanio, A. Bergeron, 2021, Medical mycology.

Frequently asked questions regarding SARS-CoV-2 in cancer patients—recommendations for clinicians caring for patients with malignant diseases

L. Pagano, M. Hoenigl, H. Hirsch, 2020, Leukemia.

Outbreak of invasive wound mucormycosis in a burn unit due to multiple strains of Mucor circinelloides f. circinelloides resolved by whole genome sequencing

J. Heitman, A. Mebazaa, M. Mimoun, 2017, bioRxiv.

Identification of intracellular stages of Cyclospora species by light microscopy of thick sections using hematoxylin.

J. Nhieu, S. Bretagne, M. Chaumette, 1996, Human pathology.

Real-Time PCR for Diagnosis and Follow-Up of Toxoplasma Reactivation after Allogeneic Stem Cell Transplantation Using Fluorescence Resonance Energy Transfer Hybridization Probes

C. Cordonnier, S. Bretagne, C. Pautas, 2000, Journal of Clinical Microbiology.

Interlaboratory evaluation of Mucorales PCR assays for testing serum specimens: A study by the fungal PCR Initiative and the Modimucor study group.

L. Millon, F. Hagen, F. Morio, 2020, Medical mycology.

Molecular identification of Mucorales in human tissues: contribution of PCR electrospray-ionization mass spectrometry.

S. Bretagne, A. Alanio, A. Bergeron, 2015, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Risk of tuberculosis is higher with anti-tumor necrosis factor monoclonal antibody therapy than with soluble tumor necrosis factor receptor therapy: The three-year prospective French Research Axed on Tolerance of Biotherapies registry.

D Emilie, F. Tubach, P. Ravaud, 2009, Arthritis and rheumatism.

Quantitative competitive PCR with bronchoalveolar lavage fluid for diagnosis of toxoplasmosis in AIDS patients

M. Vidaud, J. M. Costa, S. Bretagne, 1995, Journal of clinical microbiology.

Population Structure of Candida parapsilosis: No Genetic Difference Between French and Uruguayan Isolates Using Microsatellite Length Polymorphism

F. Dromer, M. Desnos-Ollivier, S. Bretagne, 2018, Mycopathologia.

The risk and clinical outcome of candidemia depending on underlying malignancy

F. Dromer, C. Renaudat, M. Desnos-Ollivier, 2017, Intensive Care Medicine.

Fluconazole and Echinocandin Resistance of Candida glabrata Correlates Better with Antifungal Drug Exposure Rather than with MSH2 Mutator Genotype in a French Cohort of Patients Harboring Low Rates of Resistance

M. Desnos-Ollivier, D. Perlin, S. Bretagne, 2016, Front. Microbiol..

Hydatid cyst of the subcutaneous tissue without other involvement: MR imaging features.

S. Bretagne, X. Chevalier, B. Larget-Piet, 1994, AJR. American journal of roentgenology.

Structure of the Echinococcus multilocularis U1 snRNA gene repeat.

D. Vidaud, M. Goossens, S. Bretagne, 1991, Molecular and biochemical parasitology.

Prenatal diagnosis of congenital toxoplasmosis by duplex real‐time PCR using fluorescence resonance energy transfer hybridization probes

S. Bretagne, P. Ernault, Jean‐Marc Costa, 2001, Prenatal diagnosis.

Outbreak-Causing Fungi: Pneumocystis jirovecii

S. Bretagne, A. Alanio, S. Dellière, 2019, Mycopathologia.

Pneumocystis jirovecii pneumonia: still a concern in patients with haematological malignancies and stem cell transplant recipients-authors' response.

H. Einsele, P. Hauser, W. Melchers, 2017, The Journal of antimicrobial chemotherapy.

OP-JANM160025 1264..1268

H. Einsele, P. Hauser, W. Melchers, 2017 .

Coronavirus Disease 2019-Associated Mucormycosis in France: A Rare but Deadly Complication

G. Gargala, F. Uhel, M. Bougnoux, 2021, Open forum infectious diseases.

High mortality of COVID-19 associated mucormycosis in France: a nationwide retrospective study

G. Gargala, F. Uhel, M. Bougnoux, 2021, medRxiv.

High prevalence of putative invasive pulmonary aspergillosis in critically ill COVID-19 patients

B. Mégarbane, S. Bretagne, A. Alanio, 2020, medRxiv.

Do COVID-19 patients admitted to the ICU require anti-Pneumocystis jirovecii prophylaxis?

B. Mégarbane, S. Voicu, S. Bretagne, 2020, medRxiv.

Pneumocystis jirovecii detection in asymptomatic patients: what does its natural history tell us?

S. Bretagne, A. Alanio, 2017, F1000Research.

Comparison of the viability and developmental characteristics of Echinococcus multilocularis isolates from human patients in France.

D. Vuitton, S. Bresson‐Hadni, S. Bretagne, 1990, International journal for parasitology.

Echinococcus multilocularis: microsatellite polymorphism in U1 snRNA genes.

M. Vidaud, D. Vidaud, S. Bretagne, 1996, Experimental parasitology.

Entamoeba histolytica DNA Detection in Serum from Patients with Suspected Amoebic Liver Abscess

S. Bretagne, A. Alanio, S. Dellière, 2020, Journal of Clinical Microbiology.

Rapid technique for cryopreservation of Echinococcus multilocularis metacestodes.

F. Beaujean, S. Bresson‐Hadni, S. Bretagne, 1990, International journal for parasitology.

Variation of B1 Gene and AF146527 Repeat Element Copy Numbers According to Toxoplasma gondii Strains Assessed Using Real-Time Quantitative PCR

S. Bretagne, Jean‐Marc Costa, 2012, Journal of Clinical Microbiology.

Two Unusual Occurrences of Trichomoniasis: Rapid Species Identification by PCR

J. M. Costa, O. Cabaret, F. Botterel, 2008, Journal of Clinical Microbiology.

Myiase à Cordylobia anthropophaga d'origine sud-africaine.

C. Bories, F. Botterel, S. Bretagne, 2008 .

Detection and Identification of Leishmania Species from Clinical Specimens by Using a Real-Time PCR Assay and Sequencing of the Cytochrome b Gene

F. Pratlong, P. Buffet, F. Botterel, 2007, Journal of Clinical Microbiology.

Genotyping of Candida albicans using length fragment and high-resolution melting analyses together with minisequencing of a polymorphic microsatellite locus.

Martine Olivi, F. Dromer, O. Cabaret, 2010, Journal of microbiological methods.

Molecular survey of rodent-borne Trypanosoma in Niger with special emphasis on T. lewisi imported by invasive black rats.

C. Tatard, G. Dobigny, O. Cabaret, 2011, Acta tropica.

Rapid and Quantitative Detection of Toxoplasma gondii by PCR — A LightCycler Application in Prenatal Diagnosis

S. Bretagne, P. Ernault, Jean‐Marc Costa, 2001 .

Earliest case of Candida auris infection imported in 2007 in Europe from India prior to the 2009 description in Japan.

M. Desnos-Ollivier, S. Bretagne, A. Fekkar, 2021, Journal de mycologie medicale.

New evidence of the involvement of Lichtheimia corymbifera in farmer's lung disease.

G. Reboux, S. Roussel, J. Dalphin, 2010, Medical mycology.

Hepatosplenic Candidiasis in Patients With Hematological Malignancies: A 13-Year Retrospective Cohort Study

É. Oksenhendler, L. Adès, Q. Lisan, 2022, Open forum infectious diseases.

Outcome and potentially modifiable risk factors for candidemia in critically ill burns patients: A matched cohort study

A. Mebazaa, M. Mimoun, M. Legrand, 2018, Mycoses.

Real-Time PCR as a New Tool for QuantifyingLeishmania infantum in Liver in Infected Mice

R. Durand, M. Vidaud, A. Sulahian, 2001, Clinical Diagnostic Laboratory Immunology.

Microsatellite in the beta-tubulin gene of Toxoplasma gondii as a new genetic marker for use in direct screening of amniotic fluids

M. Vidaud, J. M. Costa, S. Bretagne, 1997, Journal of clinical microbiology.

Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing

J. Heitman, A. Mebazaa, M. Mimoun, 2018, mBio.

Predisposing factors and outcome of uncommon yeast species-related fungaemia based on an exhaustive surveillance programme (2002–14)

F. Dromer, C. Renaudat, M. Desnos-Ollivier, 2017, The Journal of antimicrobial chemotherapy.

Echinocandins Susceptibility Patterns of 2,787 Yeast Isolates: Importance of the Thresholds for the Detection of FKS Mutations

F. Dromer, M. Desnos-Ollivier, O. Lortholary, 2022, Antimicrobial agents and chemotherapy.

PCR enzyme-linked immunosorbent assay for diagnosis of leishmaniasis in human immunodeficiency virus-infected patients

R. Durand, M. Vidaud, J. M. Costa, 1996, Journal of clinical microbiology.

Contribution of uniformly 13C-enriched sterigmatocystin to the study of its pulmonary metabolism.

M. Delaforge, O. Puel, O. Cabaret, 2011, Rapid communications in mass spectrometry : RCM.

Outcome of Renal Transplantation in Eight Patients With Candida sp. Contamination of Preservation Fluid: Renal Transplantation With Preservation Fluid Contamination

K. Dahan, P. Grimbert, F. Botterel, 2008 .

Drug-specific risk of non-tuberculosis opportunistic infections in patients receiving anti-TNF therapy reported to the 3-year prospective French RATIO registry

F. Tubach, P. Ravaud, X. Mariette, 2010, Annals of the rheumatic diseases.

Aspergillus fumigatus germ tube growth and not conidia ingestion induces expression of inflammatory mediator genes in the human lung epithelial cell line A549.

I. Bièche, L. Millon, M. Vidaud, 2009, Journal of medical microbiology.

Diversity of Pneumocystis jirovecii during Infection Revealed by Ultra-Deep Pyrosequencing

F. Dromer, S. Bretagne, A. Alanio, 2016, Front. Microbiol..

Seroprevalence of Toxoplasma gondii and direct genotyping using minisequencing in free-range pigs in Burkina Faso.

R. Guiguemdé, S. Bretagne, A. Alanio, 2016, International journal of food microbiology.

A new workflow for the microbiological diagnosis of febrile neutropenia in patients with a central venous catheter.

E. Sbidian, C. Cordonnier, S. Bastuji‐Garin, 2013, The Journal of antimicrobial chemotherapy.

Time to and differential time to blood culture positivity for assessing catheter‐related yeast fungaemia: A longitudinal, 7‐year study in a single university hospital

B. Berçot, J. Donay, S. Bretagne, 2019, Mycoses.

Use of Microsatellite Markers and Gene Dosage To Quantify Gene Copy Numbers in Candida albicans

G. Janbon, F. Botterel, S. Bretagne, 2005, Journal of Clinical Microbiology.

Molecular diversity and routes of colonization of Candida albicans in a surgical intensive care unit, as studied using microsatellite markers.

P. Duvaldestin, C. Desterke, S. Bretagne, 2002, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Determining the analytical specificity of PCR‐based assays for the diagnosis of IA: What is Aspergillus?

P. Hamal, A. Caliendo, L. Millon, 2016, Medical mycology.

Visceral leishmaniasis in patients with lymphoma

M. Bagot, M. Battistella, C. Thieblemont, 2020, Medicine.

Leishmania major cutaneous leishmaniasis in HIV-positive patients does not spread to extralesional sites.

A. Cosnes, S. Bretagne, C. Bachmeyer, 2006, Archives of Dermatology.

Aspergillus fumigatus endocarditis in a pediatric liver transplant recipient: Favorable outcome without cardiac surgery

V. Lambert, S. Bretagne, E. Jacquemin, 2009, Pediatric transplantation.

Late toxoplasmosis evidenced by PCR in a marrow transplant recipient.

M. Vidaud, C. Cordonnier, J. M. Costa, 1995, Bone marrow transplantation.

Guideline adherence and survival of patients with candidaemia in Europe: results from the ECMM Candida III multinational European observational cohort study.

Eelco F. J. Meijer, M. Egger, A. Barać, 2023, The Lancet. Infectious diseases.

Quantification of Pneumocystis jirovecii: Cross-Platform Comparison of One qPCR Assay with Leading Platforms and Six Master Mixes

P. White, C. Mengoli, S. Bretagne, 2019, Journal of fungi.

Clinical Significance of Quantifying Pneumocystis jirovecii DNA by Using Real-Time PCR in Bronchoalveolar Lavage Fluid from Immunocompromised Patients

C. Cordonnier, O. Cabaret, F. Botterel, 2011, Journal of Clinical Microbiology.

Candiduria in kidney transplant recipients: Is antifungal therapy useful?

M. Resche-Rigon, J. Molina, S. Bretagne, 2018, Mycoses.

Impact of alternative treatment approach for cerebral toxoplasmosis among HIV/AIDS patients from a resource-poor setting in Burkina Faso

J. Ndiaye, S. Bretagne, J. Zoungrana, 2017, Annals of parasitology.

Primary antifungal prophylaxis with micafungin after allogeneic hematopoietic stem cell transplantation: a monocentric prospective study

R. Porcher, M. Robin, R. Itzykson, 2018, Annals of Hematology.

A 10-year retrospective analysis of Toxoplasma gondii qPCR screening in allogeneic hematopoietic stem cell transplantation recipients

M. Robin, G. Socié, S. Bretagne, 2022, Bone Marrow Transplantation.

New therapeutic strategies for invasive aspergillosis in the era of azole resistance: how should the prevalence of azole resistance be defined?

E. Raffoux, S. Bretagne, A. Alanio, 2016, The Journal of antimicrobial chemotherapy.

Variable beta‐glucans production by different states of Eurotium amstelodami explains differences in inflammatory responses in airway cells

G. Reboux, S. Roussel, L. Millon, 2011, APMIS : acta pathologica, microbiologica, et immunologica Scandinavica.

Diversity of Pneumocystis jirovecii Across Europe: A Multicentre Observational Study

P. Hauser, W. Melchers, F. Morio, 2017, EBioMedicine.

Guideline Adherence Predicts Survival of Candidemia in Europe: Results from the ECMM Candida III Multinational European Study

Eelco F. J. Meijer, A. Barać, P. Hamal, 2022, SSRN Electronic Journal.

Detection ofAspergillus DNA in bronchoalveolar lavage fluid of AIDS patients by the polymerase chain reaction

J. M. Costa, S. Bretagne, E. Bart-Delabesse, 2005, European Journal of Clinical Microbiology and Infectious Diseases.

Azole Resistance of Aspergillus fumigatus in Immunocompromised Patients with Invasive Aspergillosis

E. Raffoux, S. Bretagne, A. Alanio, 2016, Emerging infectious diseases.

Evaluation of serum Mucorales PCR for the diagnosis of Mucormycoses: The MODIMUCOR prospective trial.

L. Millon, F. Morio, F. Dalle, 2022, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Metabolic detoxication pathways for sterigmatocystin in primary tracheal epithelial cells.

M. Delaforge, O. Puel, O. Cabaret, 2010, Chemical research in toxicology.

Comparison of MultiLocus Sequence Typing (MLST) and Microsatellite Length Polymorphism (MLP) for Pneumocystis jirovecii genotyping

P. Le Pape, F. Morio, M. Desnos-Ollivier, 2020, Computational and structural biotechnology journal.

Decreasing incidence of cryptococcal meningitis in West Africa in the era of highly active antiretroviral therapy

R. Guiguemdé, O. Lortholary, S. Bretagne, 2012, AIDS.

Quality control for the diagnosis of Toxoplasma gondii reactivation in SCT patients using PCR assays

R. Martino, C. Cordonnier, D. Krüger, 2001, Bone Marrow Transplantation.

ECIL recommendations for the use of biological markers for the diagnosis of invasive fungal diseases in leukemic patients and hematopoietic SCT recipients

C. Viscoli, P. Verweij, S. Bretagne, 2012, Bone Marrow Transplantation.

Invasive fungal diseases in patients with autoimmune diseases: a case series from the French RESSIF network

L. Millon, V. Poindron, F. Morio, 2023, RMD Open.

Direct genotyping of Toxoplasma gondii from amniotic fluids based on B1 gene polymorphism using minisequencing analysis

S. Bretagne, A. Alanio, J. Poveda, 2013, BMC Infectious Diseases.

Pneumocystis jirovecii pneumonia: still a concern in patients with haematological malignancies and stem cell transplant recipients.

H. Einsele, P. Hauser, W. Melchers, 2016, The Journal of antimicrobial chemotherapy.

Investigating Clinical Issues by Genotyping of Medically Important Fungi: Why and How?

M. Desnos-Ollivier, S. Bretagne, A. Alanio, 2017, Clinical Microbiology Reviews.

Recent Exposure to Caspofungin or Fluconazole Influences the Epidemiology of Candidemia: a Prospective Multicenter Study Involving 2,441 Patients

F. Dromer, M. Desnos-Ollivier, O. Lortholary, 2010, Antimicrobial Agents and Chemotherapy.

ECMM/MSG –ERC

H. Badali, S. Seyedmousavi, Nina Singh, 2019, Mycoses.

O. Cabaret, S. Bretagne, J. Boukadida, 2012, DNA and cell biology.

Continuous Decline of Toxoplasma gondii Seroprevalence in Hospital: A 1997–2014 Longitudinal Study in Paris, France

Y. Le Strat, S. Bretagne, A. Alanio, 2018, Front. Microbiol..

O. Lortholary, C. Cordonnier, S. Bastuji‐Garin, 2019, Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation.

(1, 3)-β-D-glucan assay for diagnosing invasive fungal infections in critically ill patients with hematological malignancies

A. Meert, É. Azoulay, F. Bruneel, 2016, Oncotarget.

Association between circulating DNA, serum (1->3)-β-D-glucan, and pulmonary fungal burden in Pneumocystis pneumonia.

C. Cordonnier, O. Cabaret, F. Botterel, 2012, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Critical Stages of Extracting DNA from Aspergillus fumigatus in Whole-Blood Specimens

W. Melchers, J. Loeffler, P. White, 2010, Journal of Clinical Microbiology.

Variable Correlation between Bronchoalveolar Lavage Fluid Fungal Load and Serum-(1,3)-β-d-Glucan in Patients with Pneumocystosis—A Multicenter ECMM Excellence Center Study

H. Kessler, K. Lagrou, J. Maertens, 2020, Journal of fungi.

Failure of voriconazole therapy due to acquired azole resistance in Aspergillus fumigatus in a kidney transplant recipient with chronic necrotizing aspergillosis

O. Lortholary, B. Pilmis, É. Catherinot, 2018, American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.