S. Chen

发表

Clinical characteristics of the first cases of invasive candidiasis in China due to pan-echinocandin-resistant Candida tropicalis and Candida glabrata isolates with delineation of their resistance mechanisms

Ziyong Sun, F. Kong, Yingchun Xu, 2018, Infection and drug resistance.

In Vitro Susceptibilities of Yeast Species to Fluconazole and Voriconazole as Determined by the 2010 National China Hospital Invasive Fungal Surveillance Net (CHIF-NET) Study

Ziyong Sun, F. Kong, Yingchun Xu, 2012, Journal of Clinical Microbiology.

Antifungal susceptibilities of Candida glabrata species complex, Candida krusei, Candida parapsilosis species complex and Candida tropicalis causing invasive candidiasis in China: 3 year national surveillance.

Ziyong Sun, F. Kong, Yingchun Xu, 2015, The Journal of antimicrobial chemotherapy.

Identification of Candida glabrata complex species: use of Vitek MS® RUO & Bruker ClinproTools®.

F. Kong, Yingchun Xu, M. Xiao, 2018, Future microbiology.

Sequencer-Based Capillary Gel Electrophoresis (SCGE) Targeting the rDNA Internal Transcribed Spacer (ITS) Regions for Accurate Identification of Clinically Important Yeast Species

F. Kong, Yingchun Xu, M. Xiao, 2016, PloS one.

Molecular Characterization of Candida parapsilosis by Microsatellite Typing and Emergence of Clonal Antifungal Drug Resistant Strains in a Multicenter Surveillance in China

F. Kong, Menglan Zhou, Yingchun Xu, 2020, Frontiers in Microbiology.

Epidemiology And Antifungal Susceptibility Patterns Of Invasive Fungal Infections From 2012 To 2014 In A Teaching Hospital In Central China

Meng Chen, F. Kong, Menglan Zhou, 2019, Infection and drug resistance.

Five-year China Hospital Invasive Fungal Surveillance Net (CHIF-NET) study of invasive fungal infections caused by noncandidal yeasts: species distribution and azole susceptibility

F. Kong, Menglan Zhou, Yingchun Xu, 2018, Infection and drug resistance.

An emergent clade of SARS-CoV-2 linked to returned travellers from Iran

E. Holmes, T. Sorrell, V. Sintchenko, 2020, bioRxiv.

Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Identification of Yeasts Is Contingent on Robust Reference Spectra

S. V. van Hal, J. Iredell, W. Meyer, 2011, PloS one.

A loop-mediated isothermal amplification (LAMP) assay for Strongyloides stercoralis in stool that uses a visual detection method with SYTO-82 fluorescent dye.

Rogan Lee, J. Iredell, J. Verweij, 2014, The American journal of tropical medicine and hygiene.

Defining Reference Sequences for Nocardia Species by Similarity and Clustering Analyses of 16S rRNA Gene Sequence Data

V. Sintchenko, R. Christen, F. Kong, 2011, PloS one.

What assay is optimal for the diagnosis of measles virus infection? An evaluation of the performance of a measles virus real-time reverse transcriptase PCR using the Cepheid SmartCycler(®) and antigen detection by immunofluorescence.

D. Dwyer, J. Kok, Kiran Thapa, 2015, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Mutations associated with in vitro resistance to bedaquiline in Mycobacterium tuberculosis isolates in Australia.

V. Sintchenko, T. Crighton, S. Chen, 2018, Tuberculosis.

16S-23S Internal Transcribed Spacer Region PCR and Sequencer-Based Capillary Gel Electrophoresis has Potential as an Alternative to High Performance Liquid Chromatography for Identification of Slowly Growing Nontuberculous Mycobacteria

V. Sintchenko, F. Kong, M. Xiao, 2016, PloS one.

Antibiotic susceptibility of diverse Mycobacterium abscessus complex strains in New South Wales, Australia

V. Sintchenko, S. Chen, A. Bustamante, 2015, Pathology.

Improved Identification of Rapidly Growing Mycobacteria by a 16S–23S Internal Transcribed Spacer Region PCR and Capillary Gel Electrophoresis

V. Sintchenko, F. Kong, S. Chen, 2014, PloS one.

Simultaneous co-detection of wild-type and vaccine strain measles virus using the BD MAX system.

D. Dwyer, J. Kok, Kiran Thapa, 2018, Pathology.

Rapid identification of Gram-negative organisms from blood culture bottles using a modified extraction method and MALDI-TOF mass spectrometry.

J. Iredell, S. Chen, L. Thomas, 2013, Diagnostic microbiology and infectious disease.

Current status of matrix-assisted laser desorption ionisation-time of flight mass spectrometry in the clinical microbiology laboratory

J. Iredell, D. Dwyer, J. Kok, 2013, Pathology.

Seeking Clarity within Cloudy Effluents: Differentiating Fungal from Bacterial Peritonitis in Peritoneal Dialysis Patients

R. Chavada, J. Kok, S. Chen, 2011, PloS one.

Whole-genome sequencing of Mycobacterium tuberculosis for rapid diagnostics: feasibility of a decentralised model.

V. Sintchenko, S. Chen, Qinning Wang, 2016, The Lancet. Respiratory medicine.

secA1 Gene Sequence Polymorphisms for Species Identification of Nocardia Species and Recognition of Intraspecies Genetic Diversity

T. Sorrell, V. Sintchenko, Huiping Wang, 2010, Journal of Clinical Microbiology.

Identification of Pathogenic Nocardia Species by Reverse Line Blot Hybridization Targeting the 16S rRNA and 16S-23S rRNA Gene Spacer Regions

Y. Liu, O. Lee, T. Sorrell, 2009, Journal of Clinical Microbiology.

Editorial: Laboratory preparedness for Ebolavirus disease.

V. Sintchenko, D. Dwyer, J. Kok, 2015, Pathology.

Reverse line blot hybridization and DNA sequencing studies of the 16S-23S rRNA gene intergenic spacer regions of five emerging pathogenic Nocardia species.

T. Sorrell, V. Sintchenko, S. Lian, 2010, Journal of medical microbiology.

The Antibody Response to SARS-CoV-2 Infection

V. Sintchenko, M. O’Sullivan, D. Dwyer, 2020, Open forum infectious diseases.

COVID-19 Infection With the Omicron SARS-CoV-2 Variant in a Cohort of Kidney and Kidney Pancreas Transplant Recipients: Clinical Features, Risk Factors, and Outcomes

V. Sintchenko, G. Wong, K. Kable, 2022, Transplantation.

In Vitro Susceptibility of the Yeast Pathogen Cryptococcus to Fluconazole and Other Azoles Varies with Molecular Genotype

Rebecca A Dagg, D. Carter, R. Malik, 2010, Journal of Clinical Microbiology.

Successful treatment of Cryptococcus neoformans immune reconstitution inflammatory syndrome in an immunocompetent host using thalidomide

J. Kok, S. Chen, A. Henderson, 2014, Medical mycology case reports.

Guiding the design of SARS-CoV-2 genomic surveillance by estimating the resolution of outbreak detection

V. Sintchenko, C. Suster, D. Dwyer, 2022, Frontiers in Public Health.

Distribution and Antifungal Susceptibility of Candida Species Causing Candidemia in China: An Update From the CHIF-NET Study.

F. Kong, Menglan Zhou, Yingchun Xu, 2020, The Journal of infectious diseases.

Emerging Genotype IV Japanese Encephalitis Virus Outbreak in New South Wales, Australia

D. Dwyer, J. Kok, S. Chen, 2022, Viruses.

Molecular Epidemiology and Antifungal Susceptibility of Candida glabrata in China (August 2009 to July 2014): A Multi-Center Study

Ziyong Sun, F. Kong, Yingchun Xu, 2017, Front. Microbiol..

Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance

E. Holmes, V. Sintchenko, D. Dwyer, 2022, Nature Communications.

Rapid detection of ERG11 gene mutations in clinical Candida albicans isolates with reduced susceptibility to fluconazole by rolling circle amplification and DNA sequencing

T. Sorrell, Huiping Wang, D. Ellis, 2009, BMC Microbiology.

Improved Neutralisation of the SARS-CoV-2 Omicron Variant following a Booster Dose of Pfizer-BioNTech (BNT162b2) COVID-19 Vaccine

V. Sintchenko, C. Lam, D. Dwyer, 2022, Viruses.

Improved neutralization of the SARS-CoV-2 Omicron variant after Pfizer-BioNTech BNT162b2 COVID-19 vaccine boosting

V. Sintchenko, C. Lam, D. Dwyer, 2021 .

Documenting elimination of co-circulating COVID-19 clusters using genomics in New South Wales, Australia

V. Sintchenko, C. Lam, D. Dwyer, 2021, BMC research notes.

Successful treatment of Listeria monocytogenes prosthetic valve endocarditis using rifampicin and benzylpenicillin in combination with valve replacement

J. Kok, S. Chen, T. Hasan, 2017, JMM case reports.

of SARS-CoV-2 informs infectivity and safe de-isolation assessments during COVID-19

V. Sintchenko, M. O’Sullivan, D. Dwyer, 2020 .

Whole Genome Sequencing Shows Genetic Diversity, as Well as Clonal Complex and Gene Polymorphisms Associated with Fluconazole Non-Susceptible Isolates of Candida tropicalis

V. Sintchenko, C. Keighley, W. Meyer, 2022, Journal of fungi.

Pulmonary Cryptococcosis

J. Beardsley, S. Chen, C. Halliday, 2022, Journal of fungi.

Measuring intraspecific variation in the response of clinical isolates of Aspergillus fumigatus to oxidative stress.

C. Morton, S. Chen, C. Halliday, 2019 .

Title : Measuring intraspecific variation in the response of clinical isolates 2 of Aspergillus fumigatus to oxidative stress

C. Morton, S. Chen, C. Halliday, 2019 .

Three-Locus Identification, Genotyping, and Antifungal Susceptibilities of Medically Important Trichosporon Species from China

T. Sorrell, F. Kong, Yingchun Xu, 2011, Journal of Clinical Microbiology.

Linear normalised hash function for clustering gene sequences and identifying reference sequences from multiple sequence alignments

John Potter, Fei Zhou, Vitali Sintchenko, 2012, Microbial Informatics and Experimentation.

Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling

Mikhail Prokopenko, Rosemarie Sadsad, Edward C. Holmes, 2020, Nature Medicine.

Revealing COVID-19 Transmission by SARS-CoV-2 Genome Sequencing and Agent Based Modelling

M. Prokopenko, E. Holmes, T. Sorrell, 2020, bioRxiv.

RESISTANCE CONFERRING MUTATIONS IN SARS-CoV-2 DELTA FOLLOWING SOTROVIMAB INFUSION

V. Sintchenko, D. Dwyer, J. Kok, 2021, medRxiv.

Early use of posaconazole in the successful treatment of rhino-orbital mucormycosis caused by Rhizopus oryzae.

O. Lee, J. Kok, D. Novakovic, 2007, The Journal of infection.

Clinical and Microbiological Characterization of Invasive Pulmonary Aspergillosis Caused by Aspergillus lentulus in China

F. Kong, Menglan Zhou, Yingchun Xu, 2020, Frontiers in Microbiology.

International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database--the quality controlled standard tool for routine identification of human and animal pathogenic fungi.

Gianluigi Cardinali, Duong Vu, Walter Gams, 2015, Medical mycology.

Rapid Identification and Differentiation of Trichophyton Species, Based on Sequence Polymorphisms of the Ribosomal Internal Transcribed Spacer Regions, by Rolling-Circle Amplification

T. Sorrell, D. Ellis, F. Kong, 2008, Journal of Clinical Microbiology.

Candida isolates causing refractory or recurrent oropharyngeal candidiasis in 11 hospitals in China

F. Kong, Menglan Zhou, Yingchun Xu, 2019, Infection and drug resistance.

Chaetomium atrobrunneum and Aspergillus fumigatus in multiple tracheal aspirates: Copathogens or symbiosis.

Y. Long, F. Kong, Yingchun Xu, 2016, Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi.

Accurate and Practical Identification of 20 Fusarium Species by Seven-Locus Sequence Analysis and Reverse Line Blot Hybridization, and an In Vitro Antifungal Susceptibility Study

T. Sorrell, F. Kong, Yingchun Xu, 2011, Journal of Clinical Microbiology.

Emergence of Antifungal Resistant Subclades in the Global Predominant Phylogenetic Population of Candida albicans

Xin Lu, Ziyong Sun, F. Kong, 2023, Microbiology spectrum.

Comparison of CHROMagar Salmonella Medium and Xylose-Lysine-Desoxycholate and Salmonella-Shigella Agars for Isolation of Salmonella Strains from Stool Samples

S. Chen, S. Maddocks, T. Olma, 2002, Journal of Clinical Microbiology.

Development and Clinical Application of a Panfungal PCR Assay To Detect and Identify Fungal DNA in Tissue Specimens (cid:1)

T. Sorrell, D. Carter, S. Chen, 2007 .

Five-Year National Surveillance of Invasive Candidiasis: Species Distribution and Azole Susceptibility from the China Hospital Invasive Fungal Surveillance Net (CHIF-NET) Study

Y. Li, Ziyong Sun, F. Kong, 2018, Journal of Clinical Microbiology.

Reverse Line Blot Hybridization Assay for Identiﬁcation of Medically Important Fungi from Culture and Clinical Specimens (cid:1)

T. Sorrell, F. Kong, S. Chen, 2007 .

A case of rhino-orbital mucormycosis in diabetes with haematogenous cerebral spread

N. Cheung, J. Kok, S. Chen, 2016, Medical mycology case reports.

Practical identification of eight medically important Trichosporon species by reverse line blot hybridization (RLB) assay and rolling circle amplification (RCA)

T. Sorrell, F. Kong, Yingchun Xu, 2013, Medical mycology.

Susceptibility Of Legionella Species To Antimicrobial Agents

S. Chen, Miriam Paul, Gwendolyn L. Gilbert, 1993, Pathology.

Identification and Antifungal Susceptibility Profiles of Candida haemulonii Species Complex Clinical Isolates from a Multicenter Study in China

F. Kong, Yingchun Xu, M. Xiao, 2016, Journal of Clinical Microbiology.

Whole Genome Sequencing of Candida glabrata for Detection of Markers of Antifungal Drug Resistance.

D. Marriott, T. Sorrell, V. Sintchenko, 2017, Journal of visualized experiments : JoVE.

Assessing Differences between Clinical Isolates of Aspergillus fumigatus from Cases of Proven Invasive Aspergillosis and Colonizing Isolates with Respect to Phenotype (Virulence in Tenebrio molitor Larvae) and Genotype

A. Papanicolaou, C. Morton, S. Chen, 2022, Pathogens.

Identification and Antifungal Susceptibility Profiles of Candida nivariensis and Candida bracarensis in a Multi-Center Chinese Collection of Yeasts

F. Kong, Yingchun Xu, M. Xiao, 2017, Front. Microbiol..

Real-World Experience with Echinocandin MICs against Candida Species in a Multicenter Study of Hospitals That Routinely Perform Susceptibility Testing of Bloodstream Isolates

K. Hanson, S. Shoham, A. Morris, 2014, Antimicrobial Agents and Chemotherapy.

Resistance Mutations in SARS-CoV-2 Delta Variant after Sotrovimab Use

V. Sintchenko, D. Dwyer, J. Kok, 2022, The New England journal of medicine.

An emergent clade of SARS-CoV-2 linked to returned travellers from Iran

E. Holmes, T. Sorrell, V. Sintchenko, 2020, bioRxiv.

Relentless spread and adaptation of non-typeable vanA vancomycin-resistant Enterococcus faecium: a genome-wide investigation

V. Sintchenko, M. Maley, J. Ferguson, 2018, The Journal of antimicrobial chemotherapy.

Assignment of Reference 5’-end 16S rDNA Sequences and Species-Specific Sequence Polymorphisms Improves Species Identification of Nocardia

Vitali Sintchenko, Fanrong Kong, Tania C Sorrell, 2009, The open microbiology journal.

Emergence of Japanese encephalitis in Australia: a diagnostic perspective.

V. Sintchenko, S. Doggett, M. O’Sullivan, 2022, Pathology.

Improved neutralisation of the SARS-CoV-2 Omicron variant after Pfizer-BioNTech (BNT162b2) COVID-19 vaccine boosting with a third dose

V. Sintchenko, C. Lam, M. O’Sullivan, 2021, bioRxiv.

Accurate Identification of Common Pathogenic Nocardia Species: Evaluation of a Multilocus Sequence Analysis Platform and Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry

F. Kong, Yingchun Xu, M. Xiao, 2016, PloS one.

Locally Acquired mcr-1 in Escherichia coli, Australia, 2011 and 2013

J. Iredell, S. Partridge, J. Ferguson, 2017, Emerging infectious diseases.

Improved identification of Gordonia, Rhodococcus and Tsukamurella species by 5′-end 16S rRNA gene sequencing

T. Sorrell, V. Sintchenko, F. Kong, 2011, Pathology.

Meningitis in a Chinese adult patient caused by Mycoplasma hominis: a rare infection and literature review

F. Kong, Menglan Zhou, Yingchun Xu, 2016, BMC Infectious Diseases.

Rapid and accurate direct antibiotic susceptibility testing of blood culture broths using MALDI Sepsityper combined with the BD Phoenix automated system.

J. Iredell, M. O’Sullivan, J. Kok, 2014, Journal of medical microbiology.

Cell-based Culture Informs Infectivity and Safe De-Isolation Assessments in Patients with Coronavirus Disease 2019

V. Sintchenko, M. O’Sullivan, D. Dwyer, 2020, Clinical Infectious Diseases.

Recurrence of tuberculosis in a low-incidence setting: a retrospective cross-sectional study augmented by whole genome sequencing

V. Sintchenko, T. Crighton, S. Chen, 2018, BMC Infectious Diseases.

COVID‐19 in Australia: our national response to the first cases of SARS‐CoV‐2 infection during the early biocontainment phase

T. Sorrell, R. Shaban, R. Barratt, 2020, Internal medicine journal.

Genome Sequencing Links Persistent Outbreak of Legionellosis in Sydney (New South Wales, Australia) to an Emerging Clone of Legionella pneumophila Sequence Type 211

V. Sintchenko, V. Sheppeard, Nathan L. Bachmann, 2017, Applied and Environmental Microbiology.

Rapid identification of gram negative bacteria from blood culture broth using MALDI-TOF mass spectrometry.

J. Iredell, S. Chen, L. Thomas, 2014, Journal of visualized experiments : JoVE.

Identification of Bacteria in Blood Culture Broths Using Matrix-Assisted Laser Desorption-Ionization Sepsityper™ and Time of Flight Mass Spectrometry

J. Iredell, J. Kok, S. Chen, 2011, PloS one.

Clostridioides difficile Infection: Clinical Practice and Health Outcomes in 6 Large Tertiary Hospitals in Eastern Australia

K. Byth, D. Paterson, J. Kok, 2023, Open forum infectious diseases.

Three Clustered Cases of Candidemia Caused by Candida quercitrusa and Mycological Characteristics of This Novel Species

Xiao-Jun Ma, F. Kong, Yingchun Xu, 2014, Journal of Clinical Microbiology.

Surveillance for azole resistance in clinical and environmental isolates of Aspergillus fumigatus in Australia and cyp51A homology modelling of azole-resistant isolates

D. Hibbs, T. Sorrell, D. Carter, 2018, The Journal of antimicrobial chemotherapy.

Verruconis gallopava cardiac and endovascular infection with dissemination after renal transplantation: Case report and lessons learned☆☆☆

G. Wong, K. Kable, J. Kok, 2016, Medical mycology case reports.

Evaluation of a custom Sensititre YeastOne plate for susceptibility testing of isavuconazole and other antifungals against clinically relevant yeast and mould species in three Australian diagnostic mycology laboratories.

S. Chen, C. Halliday, G. F. Weldhagen, 2022, Pathology.

A laboratory framework for ongoing optimisation of amplification based genomic surveillance programs

V. Sintchenko, C. Lam, C. Suster, 2023, bioRxiv.

Genetic Heterogeneity of Australian Candida auris Isolates: Insights From a Nonoutbreak Setting Using Whole-Genome Sequencing

V. Sintchenko, D. Eyre, A. Chakrabarti, 2020, Open forum infectious diseases.

Novel Polymorphic Multilocus Microsatellite Markers to Distinguish Candida tropicalis Isolates

F. Kong, Yingchun Xu, M. Xiao, 2016, PloS one.

Laboratory diagnosis of severe acute respiratory syndrome coronavirus 2

J. Kok, W. Rawlinson, S. Chen, 2020, Pathology.

In Vitro Susceptibilities of Yeast Species to Fluconazole and Voriconazole as Determined by the 2010 National China Hospital Invasive Fungal Surveillance Net (CHIF-NET) Study

Ziyong Sun, F. Kong, Yingchun Xu, 2012, Journal of Clinical Microbiology.

Whole Genome Sequencing of Candida glabrata for Detection of Markers of Antifungal Drug Resistance.

D. Marriott, T. Sorrell, V. Sintchenko, 2017, Journal of visualized experiments : JoVE.

Pulmonary Cryptococcosis

J. Beardsley, S. Chen, C. Halliday, 2022, Journal of fungi.

Genome sequencing links persistent outbreak of legionellosis in Sydney to an emerging clone of Legionella pneumophila ST211

V. Sintchenko, V. Sheppeard, Nathan L. Bachmann, 2017, bioRxiv.

Knowledge at what cost? An audit of the utility of panfungal PCR performed on bronchoalveolar lavage fluid specimens at a tertiary mycology laboratory.

J. Kok, V. Ahuja, S. Chen, 2020, Pathology.

Defining Reference Sequences for Nocardia Species by Similarity and Clustering Analyses of 16S rRNA Gene Sequence Data

Michael E. Bain, V. Sintchenko, R. Christen, 2011, PloS one.

Evaluation of point-of-care testing in critically unwell patients: comparison with clinical laboratory analysers and applicability to patients with Ebolavirus infection

J. Iredell, D. Dwyer, J. Kok, 2015, Pathology.