Stefano Lonardi

发表

Graphlet Kernels for Prediction of Functional Residues in Protein Structures

Vladimir Vacic, Lilia M. Iakoucheva, Stefano Lonardi, 2010, J. Comput. Biol..

Monotony of surprise and large-scale quest for unusual words.

Stefano Lonardi, Alberto Apostolico, Mary Ellen Bock, 2003 .

De novo meta-assembly of ultra-deep sequencing data

Stefano Lonardi, Hamid Mirebrahim, Timothy J. Close, 2015, Bioinform..

Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space

Gianfranco Ciardo, Marco Beccuti, Stefano Lonardi, 2013, PLoS Comput. Biol..

Progress On Physical Mapping Of The Gene-Space Of Barley

Stefano Lonardi, Timothy J. Close, Steve Wanamaker, 2007 .

7th International Workshop on Data Mining in Bioinformatics (BIOKDD 2007)

Mohammed J. Zaki, Stefano Lonardi, Jake Y. Chen, 2007 .

Accurate detection of chimeric contigs via Bionano optical maps

Stefano Lonardi, Weihua Pan, S. Lonardi, 2018, Bioinform..

Verbumculus: Fast Discovery and Visualization of Unusual Words

Stefano Lonardi, Alberto Apostolico, 2000 .

Processi di internazionalizzazione: implicazioni organizzative nelle PMI

Stefano Lonardi, 2012 .

A Compression-Boosting Transform for Two-Dimensional Data

Stefano Lonardi, Avraham A. Melkman, Qiaofeng Yang, 2006, AAIM.

Intelligent Icons: Integrating Lite-Weight Data Mining and Visualization into GUI Operating Systems

Li Wei, Eamonn J. Keogh, Stefano Lonardi, 2006, Sixth International Conference on Data Mining (ICDM'06).

A parallel algorithm for clustering protein-protein interaction networks

Stefano Lonardi, Qiaofeng Yang, S. Lonardi, 2005, 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05).

Assumption-Free Anomaly Detection in Time Series

Li Wei, Stefano Lonardi, Chotirat Ann Ratanamahatana, 2005, SSDBM.

Barcoding-free BAC Pooling Enables Combinatorial Selective Sequencing of the Barley Gene Space pdf

Gianfranco Ciardo, Marco Beccuti, Stefano Lonardi, 2011, ArXiv.

Faculty Opinions recommendation of Extensive sequencing of seven human genomes to characterize benchmark reference materials.

Stefano Lonardi, S. Lonardi, 2017 .

A parallel edge-betweenness clustering tool for Protein-Protein Interaction networks

Stefano Lonardi, Qiaofeng Yang, S. Lonardi, 2007, Int. J. Data Min. Bioinform..

Computing the Minimal Tiling Path from a Physical Map by Integer Linear Programming

Stefano Lonardi, Serdar Bozdag, Timothy J. Close, 2008, WABI.

A Graph-Theoretical Approach to the Selection of the Minimum Tiling Path from a Physical Map

Stefano Lonardi, Serdar Bozdag, Timothy J. Close, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Foreword: Special issue in honor of the 60th Birthday of Professor Alberto Apostolico: Work is for people who do not know how to: SAIL - String Algorithms, Information and Learning

Raffaele Giancarlo, Stefano Lonardi, 2008, Theor. Comput. Sci..

OMGS: Optical Map-Based Genome Scaffolding.

Stefano Lonardi, Tao Jiang, Weihua Pan, 2019, Journal of computational biology : a journal of computational molecular cell biology.

Compression-based data mining of sequential data

Li Wei, John C. Handley, Eamonn J. Keogh, 2007, Data Mining and Knowledge Discovery.

DeeplyEssential: a deep neural network for predicting essential genes in microbes

Stefano Lonardi, Md Abid Hasan, 2020, BMC bioinformatics.

Seventh International Workshop on Data Mining in Bioinformatics

Stefano Lonardi, Jake Y. Chen, Mohammed Zaki, 2007, KDD '07.

Gridding and compression of microarray images

Stefano Lonardi, Yu L. L. Luo, 2004 .

Joint source-channel LZ'77 coding

Wojciech Szpankowski, Stefano Lonardi, 2003, Data Compression Conference, 2003. Proceedings. DCC 2003.

A Linear-time Algorithm for Predicting Functional Annotations from Protein Protein Interaction Networks ∗

Stefano Lonardi, Yonghui Wu, 2007 .

Authentication of LZ-77 compressed data

Mikhail J. Atallah, Stefano Lonardi, 2003, SAC '03.

Applying LVQ techniques to compress historical information in sensor networks

Dimitrios Gunopulos, Stefano Lonardi, Vana Kalogeraki, 2005, Data Compression Conference.

Two-Level Microprocessor-Accelerator Partitioning

Frank Vahid, Stefano Lonardi, Yonghui Wu, 2007, 2007 Design, Automation & Test in Europe Conference & Exhibition.

Efficient Detection of Unusual Words

Stefano Lonardi, Alberto Apostolico, Mary Ellen Bock, 2000, J. Comput. Biol..

8th International Workshop on Data Mining in Bioinformatics (BIOKDD 2008)

Mohammed J. Zaki, Stefano Lonardi, Jake Y. Chen, 2008 .

Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads

Gianfranco Ciardo, Marco Beccuti, Stefano Lonardi, 2015, WABI.

A Bit Level Representation for Time Series Data Mining with Shape Based Similarity

Gareth J. Janacek, Eamonn J. Keogh, Stefano Lonardi, 2006, Data Mining and Knowledge Discovery.

Deciphering histone code of transcriptional regulation in malaria parasites by large-scale data mining

Stefano Lonardi, Jie Zheng, Haifen Chen, 2014, Comput. Biol. Chem..

Assignment of orthologous genes via genome rearrangement

Tao Jiang, Xin Chen, Stefano Lonardi, 2005, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

FHAST: FPGA-Based Acceleration of Bowtie in Hardware

Stefano Lonardi, Walid A. Najjar, Jason R. Villarreal, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A Compartmentalized Approach to the Assembly of Physical Maps

Stefano Lonardi, Serdar Bozdag, Timothy J. Close, 2007, BIBE.

Discovering the Intrinsic Cardinality and Dimensionality of Time Series Using MDL

Eamonn J. Keogh, Stefano Lonardi, Yuan Hao, 2011, 2011 IEEE 11th International Conference on Data Mining.

CLARK, accurate and efficient classification of DNA sequences

Stefano Lonardi, Timothy J. Close, Steve Wanamaker, 2014, BCB.

VizTree: a Tool for Visually Mining and Monitoring Massive Time Series Databases

Eamonn J. Keogh, Stefano Lonardi, Jessica Lin, 2004, VLDB.

Composition Profiler: a tool for discovery and visualization of amino acid composition differences

Vladimir Vacic, Stefano Lonardi, A. Keith Dunker, 2007, BMC Bioinformatics.

Fractal image approximation and orthogonal bases

Stefano Lonardi, Paolo Sommaruga, 1999, Signal Process. Image Commun..

Efficient selection of unique and popular oligos for large EST databases

Tao Jiang, Stefano Lonardi, Timothy J. Close, 2004, Bioinform..

DeeplyEssential: a deep neural network for predicting essential genes in microbes

Stefano Lonardi, Md Abid Hasan, S. Lonardi, 2019, BMC Bioinformatics.

Error resilient LZ'77 scheme and its analysis

Wojciech Szpankowski, Stefano Lonardi, Mark Daniel Ward, 2004, International Symposium onInformation Theory, 2004. ISIT 2004. Proceedings..

Accurate Construction of Consensus Genetic Maps via Integer Linear Programming

Stefano Lonardi, Yonghui Wu, Timothy J. Close, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Using the minimum description length to discover the intrinsic cardinality and dimensionality of time series

Eamonn J. Keogh, Stefano Lonardi, Yuan Hao, 2014, Data Mining and Knowledge Discovery.

Higher classification sensitivity of short metagenomic reads with CLARK-S

Stefano Lonardi, Rachid Ounit, S. Lonardi, 2016, bioRxiv.

A Practical Tool for Visualizing and Data Mining Medical Time Series

Li Wei, Eamonn J. Keogh, Stefano Lonardi, 2005, 18th IEEE Symposium on Computer-Based Medical Systems (CBMS'05).

Gridding and compression of microarray images

Yu Luo, Stefano Lonardi, S. Lonardi, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

Encoding pyramids by Labeling RAAM

A. Sperduti, A. Starita, Stefano Lonardi, 1994, Proceedings of IEEE Workshop on Neural Networks for Signal Processing.

Augmenting LZ‐77 with authentication and integrity assurance capabilities

Mikhail J. Atallah, Stefano Lonardi, 2004, Concurr. Pract. Exp..

On the accurate construction of genetic linkage maps

Stefano Lonardi, Yonghui Wu, 2008 .

On the average sequence complexity

Svante Janson, Wojciech Szpankowski, Stefano Lonardi, 2004, Data Compression Conference, 2004. Proceedings. DCC 2004.

We Have Seen the Future, and It Is Symbolic

Eamonn J. Keogh, Stefano Lonardi, Jessica Lin, 2004, ACSW.

BIOKDD 2008: a workshop report on data mining in bioinformatics

Mohammed J. Zaki, Stefano Lonardi, Jake Yue Chen, 2008, SKDD.

Finding biclusters by random projections

Wojciech Szpankowski, Stefano Lonardi, Qiaofeng Yang, 2006, Theor. Comput. Sci..

Computing the Assignment of Orthologous Genes via Genome Rearrangement

Tao Jiang, Xin Chen, Stefano Lonardi, 2005, APBC.

Higher Classification Accuracy of Short Metagenomic Reads by Discriminative Spaced k-mers

Stefano Lonardi, Rachid Ounit, S. Lonardi, 2015, WABI.

A symbolic representation of time series, with implications for streaming algorithms

Eamonn J. Keogh, Stefano Lonardi, Jessica Lin, 2003, DMKD '03.

Pattern Discovery in Biosequences Pattern Discovery in Biosequences

Stefano Lonardi, 2005 .

CPM's 20th Anniversary: A Statistical Retrospective

Stefano Lonardi, Gregory Kucherov, Thierry Lecroq, 2009, CPM.

IEEE/ACM TRANSACTIONS ON

Luca Benini, Tao Jiang, Stefano Lonardi, 2004 .

Time Series Epenthesis: Clustering Time Series Streams Requires Ignoring Some Data

Eamonn J. Keogh, Stefano Lonardi, Scott Evans, 2011, 2011 IEEE 11th International Conference on Data Mining.

A Novel Bit Level Time Series Representation with Implication of Similarity Search and Clustering

Eamonn J. Keogh, Stefano Lonardi, Anthony J. Bagnall, 2005, PAKDD.

Development and implementation of high-throughput SNP genotyping in barley

Stefano Lonardi, Serdar Bozdag, Kavitha Madishetty, 2009, BMC Genomics.

Clock-Frequency Assignment for Multiple Clock Domain Systems-on-a-Chip

Frank Vahid, Stefano Lonardi, Yonghui Wu, 2007, 2007 Design, Automation & Test in Europe Conference & Exhibition.

Selfish: discovery of differential chromatin interactions via a self-similarity measure

Stefano Lonardi, Ferhat Ay, Abbas Roayaei Ardakany, 2019, bioRxiv.

When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality

Gianfranco Ciardo, Stefano Lonardi, Hamid Mirebrahim, 2015, Bioinform..

Probabilistic discovery of time series motifs

Eamonn J. Keogh, Stefano Lonardi, Bill Yuan-chi Chiu, 2003, KDD '03.

Finding surprising patterns in a time series database in linear time and space

Eamonn J. Keogh, Stefano Lonardi, Bill Yuan-chi Chiu, 2002, KDD.

On the average sequence complexity

Svante Janson, Wojciech Szpankowski, Stefano Lonardi, 2004, Data Compression Conference, 2004. Proceedings. DCC 2004.

Novo&Stitch: accurate reconciliation of genome assemblies via optical maps

Stefano Lonardi, Steve Wanamaker, Weihua Pan, 2018, Bioinform..

Faculty of 1000 evaluation for Deep learning improves prediction of CRISPR-Cpf1 guide RNA activity.

Stefano Lonardi, 2018 .

Proceedings of the 17th international conference on String processing and information retrieval

Stefano Lonardi, Edgar Chávez, 2010 .

Augmenting LZ-77 with authentication and integrity assurance capabilities: Research Articles

Stefano Lonardi, Mikhail J. Atallah, 2004 .

Discovering the Intrinsic Cardinality and Dimensionality of Time Series Using MDL

Eamonn J. Keogh, Stefano Lonardi, Yuan Hao, 2011, 2011 IEEE 11th International Conference on Data Mining.

Integrating Lite-Weight but Ubiquitous Data Mining into GUI Operating Systems

Li Wei, Eamonn J. Keogh, Stefano Lonardi, 2005, J. Univers. Comput. Sci..

Some theory and practice of greedy off-line textual substitution

Stefano Lonardi, Alberto Apostolico, 1998, Proceedings DCC '98 Data Compression Conference (Cat. No.98TB100225).

Accurate Decoding of Pooled Sequenced Data Using Compressed Sensing

Atri Rudra, Gianfranco Ciardo, Stefano Lonardi, 2013, WABI.

Monotony of surprise and large-scale quest for unusual words

Stefano Lonardi, Alberto Apostolico, Mary Ellen Bock, 2002, RECOMB '02.

Finding Biclusters by Random Projections

Wojciech Szpankowski, Stefano Lonardi, Qiaofeng Yang, 2004, CPM.

A Metagenomic Analysis of Environmental and Clinical Samples Using a Secure Hybrid Cloud Solution.

Stefano Lonardi, Rachid Ounit, Chris Mason, 2019, Journal of biomolecular techniques : JBT.

Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation

Stefano Lonardi, Ferhat Ay, Abbas Roayaei Ardakany, 2020, Genome Biology.

Error Resilient LZ'77 Data Compression: Algorithms, Analysis, and Experiments

Wojciech Szpankowski, Stefano Lonardi, Mark Daniel Ward, 2007, IEEE Transactions on Information Theory.

Efficient Discovery of Unusual Patterns in Time Series

Eamonn J. Keogh, Stefano Lonardi, Jessica Lin, 2006, New Generation Computing.

OMGS: Optical Map-based Genome Scaffolding

Tao Jiang, Stefano Lonardi, Weihua Pan, 2019, bioRxiv.

Efficient Selection of Unique and Popular Oligos for Large EST Databases

Tao Jiang, Stefano Lonardi, Timothy J. Close, 2003, CPM.

A Graph-Theoretic Approach to Compute Minimal Tiling Path from a Physical Map

Stefano Lonardi, Serdar Bozdag, Timothy J. Close, 2009 .

Efficient information compression in sensor networks

Dimitrios Gunopulos, Stefano Lonardi, Vana Kalogeraki, 2006, Int. J. Sens. Networks.

String processing and information retrieval : 17th International Symposium, SPIRE 2010, Los Cabos, Mexico, October 11-13, 2010 : proceedings

Stefano Lonardi, Edger Chavez, 2010, SPIRE 2010.

Global detectors of unusual words: design, implementation, and applications to pattern discovery in biosequences

Stefano Lonardi, Alberto Apostolico, S. Lonardi, 2001 .

Biological Data Mining

Jake Y. Chen, Stefano Lonardi, 2009 .

BRAT: bisulfite-treated reads analysis tool

Stefano Lonardi, Karine G. Le Roch, Nadia Ponts, 2010, Bioinform..

Time-series Bitmaps: a Practical Visualization Tool for Working with Large Time Series Databases

Nitin Kumar, Eamonn J. Keogh, Stefano Lonardi, 2005, SDM.

Visualizing and Discovering Non-Trivial Patterns in Large Time Series Databases

Eamonn J. Keogh, Stefano Lonardi, Jessica Lin, 2005, Inf. Vis..

Selfish: discovery of differential chromatin interactions via a self-similarity measure

Stefano Lonardi, Ferhat Ay, Abbas Roayaei Ardakany, 2019, Bioinform..

Soft-core Processor Customization using the Design of Experiments Paradigm

Frank Vahid, Stefano Lonardi, David Sheldon, 2007, 2007 Design, Automation & Test in Europe Conference & Exhibition.

OligoSpawn: a software tool for the design of overgo probes from large unigene datasets

Tao Jiang, Stefano Lonardi, Timothy J. Close, 2006, BMC Bioinformatics.

A compartmentalized approach to the assembly of physical maps

Stefano Lonardi, Serdar Bozdag, Timothy J. Close, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

International Workshop on Data Mining in Bioinformatics (BIOKDD) 2007. Introduction.

Stefano Lonardi, Jake Chen, 2008, Journal of bioinformatics and computational biology.

Compression of biological sequences by greedy off-line textual substitution

Stefano Lonardi, Alberto Apostolico, 2000, Proceedings DCC 2000. Data Compression Conference.

Exploration of Short Reads Genome Mapping in Hardware

Stefano Lonardi, Walid A. Najjar, Edward Fernandez, 2010, 2010 International Conference on Field Programmable Logic and Applications.

Visually mining and monitoring massive time series

Jessica Lin, Eamonn J. Keogh, Stefano Lonardi, 2004, KDD.

Deconvoluting BAC-Gene Relationships Using a Physical Map

Stefano Lonardi, Yonghui Wu, Timothy J. Close, 2008, J. Bioinform. Comput. Biol..

Experiencing SAX: a novel symbolic representation of time series

Li Wei, Jessica Lin, Eamonn J. Keogh, 2007, Data Mining and Knowledge Discovery.

Data Mining in Bioinformatics: Selected Papers from BIOKDD

Stefano Lonardi, Jake Chen, S. Lonardi, 2010, TCBB.

String Matching in Hardware Using the FM-Index

Stefano Lonardi, Walid A. Najjar, Edward Fernandez, 2011, 2011 IEEE 19th Annual International Symposium on Field-Programmable Custom Computing Machines.

Higher classification sensitivity of short metagenomic reads with CLARK-S

Stefano Lonardi, Rachid Ounit, 2016 .

Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data

Stefano Lonardi, Yonghui Wu, Timothy J. Close, 2007, WABI.

Linear global detectors of redundant and rare substrings

Stefano Lonardi, Alberto Apostolico, Mary Ellen Bock, 1999, Proceedings DCC'99 Data Compression Conference (Cat. No. PR00096).

Error-resilient LZW data compression

Wojciech Szpankowski, Stefano Lonardi, Yonghui Wu, 2006, Data Compression Conference (DCC'06).

A data compression technique for sensor networks with dynamic bandwidth allocation

Dimitrios Gunopulos, Stefano Lonardi, Vana Kalogeraki, 2005, 12th International Symposium on Temporal Representation and Reasoning (TIME'05).

Towards parameter-free data mining

Eamonn J. Keogh, Stefano Lonardi, Chotirat Ratanamahatana, 2004, KDD.

Online Information Compression in Sensor Networks

Dimitrios Gunopulos, Stefano Lonardi, Vana Kalogeraki, 2006, 2006 IEEE International Conference on Communications.

Efficient and Accurate Detection of Topologically Associating Domains from Contact Maps

Stefano Lonardi, Abbas Roayaei Ardakany, S. Lonardi, 2017, WABI.

A Linear-Time Algorithm for Predicting Functional Annotations from PPI Networks

Stefano Lonardi, Yonghui Wu, 2008, J. Bioinform. Comput. Biol..

A Probabilistic Model for Small RNA Flowgram Matching

Vladimir Vacic, Stefano Lonardi, Hailing Jin, 2008, Pacific Symposium on Biocomputing.

A speed-up for the commute between subword trees and DAWGs

Stefano Lonardi, Alberto Apostolico, 2002, Inf. Process. Lett..

Verbumculus and the discovery of unusual words

Stefano Lonardi, Alberto Apostolico, Fang-Cheng Gong, 2008, Journal of Computer Science and Technology.

Data Mining in Bioinformatics: Selected Papers from BIOKDD

Stefano Lonardi, Jake Yue Chen, 2010, IEEE ACM Trans. Comput. Biol. Bioinform..

Analysis of secondary structure elements of proteins using indexing techniques

Stefano Lonardi, Concettina Guerra, Giuseppe Zanotti, 2002, Proceedings. First International Symposium on 3D Data Processing Visualization and Transmission.

PuFFIN - a parameter-free method to build nucleosome maps from paired-end reads

Stefano Lonardi, Karine G. Le Roch, Anton Polishko, 2014, BMC Bioinformatics.

On the average sequence complexity

Svante Janson, Wojciech Szpankowski, Stefano Lonardi, 2004, Data Compression Conference, 2004. Proceedings. DCC 2004.

Computational Biology

Stefano Lonardi, Stefan Kurtz, 2004, Handbook of Data Structures and Applications.

Multithreaded FPGA acceleration of DNA sequence mapping

Stefano Lonardi, Walid A. Najjar, Jason R. Villarreal, 2012, 2012 IEEE Conference on High Performance Extreme Computing.

BRAT-nova: fast and accurate mapping of bisulfite-treated reads

Stefano Lonardi, Rachid Ounit, Elena Yavorska Harris, 2016, Bioinform..

De novo assembly of ultra-deep sequencing data

Stefano Lonardi, Hamid Mirebrahim, Timothy J. Close, 2014, BCB.

MDL-based time series clustering

Eamonn J. Keogh, Stefano Lonardi, Scott Evans, 2012, Knowledge and Information Systems.

NOrMAL: accurate nucleosome positioning using a modified Gaussian mixture model

Stefano Lonardi, Karine G. Le Roch, Nadia Ponts, 2012, Bioinform..

Dot plots for time series analysis

Eamonn J. Keogh, Stefano Lonardi, Ada Wai-Chee Fu, 2005, 17th IEEE International Conference on Tools with Artificial Intelligence (ICTAI'05).

BRAT-BW: efficient and accurate mapping of bisulfite-treated reads

Stefano Lonardi, Karine G. Le Roch, Nadia Ponts, 2012, Bioinform..

OMGS: Optical Map-based Genome Scaffolding

Stefano Lonardi, Tao Jiang, Weihua Pan, 2019 .

When Less is More: “Slicing” Sequencing Data Improves Read Decoding Accuracy and De Novo Assembly Quality

Gianfranco Ciardo, Stefano Lonardi, Hamid Mirebrahim, 2015, bioRxiv.

Efficient Genome-Wide TagSNP Selection Across Populations via the Linkage Disequilibrium Criterion

Tao Jiang, Stefano Lonardi, Yonghui Wu, 2010, J. Comput. Biol..

Deconvoluting the BAC-gene relationships using a physical map.

Stefano Lonardi, Lan Liu, Yonghui Wu, 2007, Computational systems bioinformatics. Computational Systems Bioinformatics Conference.

Discovery of repetitive patterns in DNA with accurate boundaries

Stefano Lonardi, Jie Zheng, 2005, Fifth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'05).

A compression-boosting transform for 2D data

Stefano Lonardi, Qiaofeng Yang, 2005, Data Compression Conference.

ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks

Stefano Lonardi, Weihua Pan, Md. Abid Hasan, 2017, WABI.

mClass: Cancer Type Classification with Somatic Point Mutation Data

Stefano Lonardi, Md. Abid Hasan, 2018, RECOMB-CG.

Prediction of histone post-translational modifications using deep learning

Stefano Lonardi, Dipankar Ranjan Baisya, S. Lonardi, 2020, Bioinform..

Reference-agnostic representation and visualization of pan-genomes

Stefano Lonardi, Qihua Liang, S. Lonardi, 2021, BMC Bioinform..

Sequencing of 15 622 gene‐bearing BACs clarifies the gene‐dense regions of the barley genome

Marco Beccuti, Stefano Lonardi, Serdar Bozdag, 2015, The Plant journal : for cell and molecular biology.

Graph theoretical approaches to the analysis of large-scale genomic data

Stefano Lonardi, Qiaofeng Yang, 2006 .

Coupling expressed sequences and bacterial artificial chromosome resources to access the barley genome

Stefano Lonardi, Timothy J. Close, Steve Wanamaker, 2018 .

Storage and transmission of microarray images.

Stefano Lonardi, S. Lonardi, Yu Luo, 2005, Drug discovery today.

A probabilistic method for small RNA flowgram matching.

Vladimir Vacic, Stefano Lonardi, Hailing Jin, 2007, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis

Vladimir Vacic, Stefano Lonardi, Thomas Girke, 2008, BMC Molecular Biology.

Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph

Stefano Lonardi, Timothy J. Close, Prasanna R. Bhat, 2008, PLoS genetics.

Comprehensive Benchmarking and Ensemble Approaches for Metagenomic Classifiers

Stefano Lonardi, Gail L. Rosen, Rita R. Colwell, 2017 .

Efficient algorithms for genome-wide tagSNP selection across populations via the linkage disequilibrium criterion.

Tao Jiang, Stefano Lonardi, Yonghui Wu, 2007, Computational systems bioinformatics. Computational Systems Bioinformatics Conference.

Mining motifs in massive time series databases

Eamonn J. Keogh, Stefano Lonardi, Jessica Lin, 2002, 2002 IEEE International Conference on Data Mining, 2002. Proceedings..

Genome resources for climate-resilient cowpea, an essential crop for food security

Stefano Lonardi, Serdar Bozdag, Ousmane Boukar, 2016, bioRxiv.

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

Stefano Lonardi, Gail L. Rosen, Rita R. Colwell, 2017, Genome Biology.

An Improved Consensus Linkage Map of Barley Based on Flow‐Sorted Chromosomes and Single Nucleotide Polymorphism Markers

Stefano Lonardi, Timothy J. Close, Matthew J. Moscou, 2011 .

Reference guided assembly of heterogeneous DNA sequencing data sets to improve the quality of P. falciparum DD2 genome

Stefano Lonardi, Hamid Mirebrahim, Karine G. Le Roch, 2012 .

DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum

Stefano Lonardi, Nadia Ponts, Jacques Prudhomme, 2014, BMC Genomics.

Mechanisms of small RNA generation from cis-NATs in response to environmental and developmental cues.

Stefano Lonardi, Hailing Jin, Viswanathan Chinnusamy, 2013, Molecular plant.

On the accurate construction of consensus genetic maps.

Stefano Lonardi, Yonghui Wu, Timothy J Close, 2008, Computational systems bioinformatics. Computational Systems Bioinformatics Conference.