Rui Fa

发表

Splitting‐Merging Awareness Tactics (SMART)

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015 .

Identification of genes consistently co-expressed in multiple microarray datasets by a genome-wide Bi-CoPaM approach

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2013, 2013 IEEE International Conference on Acoustics, Speech and Signal Processing.

Scalable clustering based on enhanced-SMART for large-scale FMRI datasets

Asoke K. Nandi, Chao Liu, Elvira Brattico, 2015, 2015 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Visualisations and Presentations

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015 .

Comprehensive analysis of multiple microarray datasets by binarization of consensus partition matrix

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2012, 2012 IEEE International Workshop on Machine Learning for Signal Processing.

Predicting Human Protein Function with Multi-task Deep Neural Networks

David T. Jones, Domenico Cozzetto, Cen Wan, 2018 .

Tightness‐tunable Clustering (UNCLES)

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015 .

Application of the Bi-CoPaM Method to Five Escherichia Coli Datasets Generated under Various Biological Conditions

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015, J. Signal Process. Syst..

Neural Network‐based Clustering

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015 .

CoCE-SMART: Consensus clustering based on enhanced splitting-merging awareness tactics

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015, 2015 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Using deep maxout neural networks to improve the accuracy of function prediction from protein interaction networks

David T. Jones, Domenico Cozzetto, Cen Wan, 2018, bioRxiv.

Integrative Cluster Analysis in Bioinformatics: Nandi/Integrative Cluster Analysis in Bioinformatics

Asoke K. Nandi, Rui Fa, Basel Abu-jamous, 2015 .

Splitting-while-merging framework for clustering high-dimension data with component-wise expectation conditional maximisation

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2014, 2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

M-N scatter plots technique for evaluating varying-size clusters and setting the parameters of Bi-CoPaM and Uncles methods

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2014, 2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Clustering Methods Discussion

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015 .

Databases, Standards and Annotation

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015 .

Linking Brain Responses to Naturalistic Music Through Analysis of Ongoing EEG and Stimulus Features

Tapani Ristaniemi, Fengyu Cong, Vinoo Alluri, 2013, IEEE Transactions on Multimedia.

Integrative Cluster Analysis in Bioinformatics

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015 .

1. Introduction to Bioinformatics

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015 .

Enhanced SMART framework for gene clustering using successive processing

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2013, 2013 IEEE International Workshop on Machine Learning for Signal Processing (MLSP).

Method for the identification of the subsets of genes specifically consistently co-expressed in a set of datasets

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2013, 2013 IEEE International Workshop on Machine Learning for Signal Processing (MLSP).

Computational Methods in Bioinformatics

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2015 .

Yeast gene CMR1/YDL156W is consistently co-expressed with genes participating in DNA-metabolic processes in a variety of stringent clustering experiments

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2013, Journal of The Royal Society Interface.

Hybrid binarisation technique for the Bi-CoPaM method

Asoke K. Nandi, Basel Abu-Jamous, Rui Fa, 2013 .

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Jari Björne, Tapio Salakoski, Giorgio Valentini, 2019, Genome Biology.