Zhiyong Zhang

Determining structural ensembles of flexible multi-domain proteins using small-angle X-ray scattering and molecular dynamics simulations

Junhui Peng, Xiaobing Zuo, Q. Gong, 2015, Protein & Cell.

Quasiequilibrium unfolding thermodynamics of a small protein studied by molecular dynamics simulation with an explicit water model.

Jihua Wang, Zhiyong Zhang, Haiyan Liu, 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

Molecular dynamics simulations of peptides and proteins with amplified collective motions.

Haiyan Liu, Yunyu Shi, Zhiyong Zhang, 2003, Biophysical journal.

Entropic folding pathway of human epidermal growth factor explored by disulfide scrambling and amplified collective motion simulations.

Willy Wriggers, W. Wriggers, Zhiyong Zhang, 2006, Biochemistry.

Key intermolecular interactions in the E. coli 70S ribosome revealed by coarse-grained analysis.

G. Voth, Zhiyong Zhang, K. Sanbonmatsu, 2011, Journal of the American Chemical Society.

Backmapping from Multiresolution Coarse-Grained Models to Atomic Structures of Large Biomolecules by Restrained Molecular Dynamics Simulations Using Bayesian Inference.

Junhui Peng, Chuang Yuan, Zhiyong Zhang, 2019, Journal of chemical theory and computation.

Polymorphism of the epidermal growth factor receptor extracellular ligand binding domain: the dimer interface depends on domain stabilization.

Willy Wriggers, W. Wriggers, Zhiyong Zhang, 2011, Biochemistry.

Defining coarse-grained representations of large biomolecules and biomolecular complexes from elastic network models.

Jim Pfaendtner, Gregory A Voth, G. Voth, 2009, Biophysical journal.

Characterization of protein flexibility using small-angle x-ray scattering and amplified collective motion simulations.

Junhui Peng, Xiaobing Zuo, Q. Gong, 2014, Biophysical journal.

A systematic methodology for defining coarse-grained sites in large biomolecules.

Jim Pfaendtner, Gregory A Voth, Lanyuan Lu, 2008, Biophysical journal.