Daniel Gautheret

发表

Entropy Measures Quantify Global Splicing Disorders in Cancer

William Ritchie, Samuel Granjeaud, Denis Puthier, 2008, PLoS Comput. Biol..

BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms

Daniel Gautheret, Michel Termier, Julien Allali, 2012, Adv. Bioinformatics.

A Dual Model for Prioritizing Cancer Mutations in the Non-coding Genome Based on Germline and Somatic Events

Daniel Gautheret, Jia Li, Marie-Anne Poursat, 2015, PLoS Comput. Biol..

Metagenome Annotation Using a Distributed Grid of Undergraduate Students

Daniel Gautheret, Pascal Hingamp, Céline Brochier, 2008, PLoS biology.

Mireval: a web tool for simple microRNA prediction in genome sequences

William Ritchie, Daniel Gautheret, François-Xavier Théodule, 2008, Bioinform..

Profile-based detection of microRNA precursors in animal genomes

Daniel Gautheret, Matthieu Legendre, André Lambert, 2005, Bioinform..

An RNA pattern matching program with enhanced performance and portability

Daniel Gautheret, Robert Cedergren, A. Laferriere, 1994, Comput. Appl. Biosci..

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

Daniel Gautheret, Eduardo P. C. Rocha, Gilles Vergnaud, 2018, Nucleic Acids Res..

AltTrans: Transcript pattern variants annotated for both alternative splicing and alternative polyadenylation

Daniel Gautheret, Thangavel Alphonse Thanaraj, Jean-Jack M. Riethoven, 2006, BMC Bioinformatics.

The ERPIN server: an interface to profile-based RNA motif identification

Daniel Gautheret, Matthieu Legendre, Jean-Fred Fontaine, 2004, Nucleic Acids Res..

Differential Repression of Alternative Transcripts: A Screen for miRNA Targets

William Ritchie, Daniel Gautheret, Matthieu Legendre, 2006, PLoS Comput. Biol..

NAPP: the Nucleic Acid Phylogenetic Profile Database

Daniel Gautheret, Antonin Marchais, Alban Ott, 2011, Nucleic Acids Res..

RNAspace: an integrated environment for the prediction, annotation and analysis of non-coding RNA

Philippe Bardou, Daniel Gautheret, Hélène Touzet, 2011 .

A secondary and tertiary structure editor for nucleic acids

Daniel Gautheret, Guy Lapalme, François Major, 1988, Comput. Appl. Biosci..

Using functional and logic programming in molecular graphics applications

Daniel Gautheret, Guy Lapalme, Marcel Turcotte, 1990 .

REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets

Daniel Gautheret, Zamin Iqbal, Rayan Chikhi, 2020, Bioinformatics.

Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA

Daniel Gautheret, François Major, Robert Cedergren, 1990, Comput. Appl. Biosci..

A benchmark study of scoring methods for non‐coding mutations

Daniel Gautheret, Damien Drubay, Stefan Michiels, 2018, Bioinform..

REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets

Daniel Gautheret, Zamin Iqbal, Rayan Chikhi, 2020, bioRxiv.

Applications of single-cell and bulk RNA sequencing in onco-immunology.

Daniel Gautheret, Andrei Zinovyev, Maria Kuksin, 2021, European journal of cancer.

2-kupl: mapping-free variant detection from DNA-seq data of matched samples

Daniel Gautheret, Christine Pourcel, Yunfeng Wang, 2021, BMC Bioinform..

Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus

Daniel Gautheret, Liang-Hu Qu, Chong-Jian Chen, 2011, RNA biology.

A survey of metazoan selenocysteine insertion sequences.

Daniel Gautheret, André Lambert, D. Gautheret, 2002, Biochimie.

Expression profiling in mouse fetal thymus reveals clusters of coordinately expressed genes that mark individual stages of T-cell ontogeny

Mirana Ramialison, Samuel Granjeaud, Daniel Gautheret, 2002, Immunogenetics.

Acquired initiating mutations in early hematopoietic cells of CLL patients.

Satoru Miyano, Yuichi Shiraishi, Daniel Gautheret, 2014, Cancer discovery.

DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition

Daniel Gautheret, Rayan Chikhi, Mikaël Salson, 2017, Genome Biology.

Benchmarking RNA secondary structure comparison algorithms

Cedric Chauve, Daniel Gautheret, Michel Termier, 2008 .

ASTD: The Alternative Splicing and Transcript Diversity database.

Oliver Hofmann, Gautier Koscielny, William Ritchie, 2009, Genomics.

RNA stem-loops: to be or not to be cleaved by RNAse III.

William Ritchie, Daniel Gautheret, Matthieu Legendre, 2007, RNA.

ARNold: A web tool for the prediction of Rho-independent transcription terminators

Daniel Gautheret, Antonin Marchais, Magali Naville, 2011, RNA biology.

An assessment of bacterial small RNA target prediction programs

Daniel Gautheret, Alban Ott, D. Gautheret, 2015, RNA biology.