Frank M Aarestrup

Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes

Carsten Friis, David W Ussery, Rolf S Kaas, 2012, BMC Genomics.

Global monitoring of Salmonella serovar distribution from the World Health Organization Global Foodborne Infections Network Country Data Bank: results of quality assured laboratories from 2001 to 2007.

Henrik C Wegener, Susanne Karlsmose, F. Aarestrup, 2011, Foodborne pathogens and disease.

Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing.

Ole Lund, Rolf Sommer Kaas, Mette Voldby Larsen, 2013, The Journal of antimicrobial chemotherapy.

Genomic Signature of Multidrug-Resistant Salmonella enterica Serovar Typhi Isolates Related to a Massive Outbreak in Zambia between 2010 and 2012

Oksana Lukjancenko, Pimlapas Leekitcharoenphon, Rolf S Kaas, 2014, Journal of Clinical Microbiology.

Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.

Ole Lund, Philip T L C Clausen, O. Lund, 2016, The Journal of antimicrobial chemotherapy.

Metagenomic analysis of viruses in toilet waste from long distance flights—A new procedure for global infectious disease surveillance

Oksana Lukjancenko, Anna Charlotte Schultz, F. Aarestrup, 2019, PloS one.

snpTree - a web-server to identify and construct SNP trees from whole genome sequence data

Simon Rasmussen, Pimlapas Leekitcharoenphon, Martin Christen Frølund Thomsen, 2012, BMC Genomics.