Yaakov Levy

发表

Protein Assembly and Building Blocks: Beyond the Limits of the LEGO Brick Metaphor.

Yaakov Levy, Y. Levy, 2017, Biochemistry.

Modulating Protein-DNA Interactions by Post-Translational Modifications at Disordered Regions

Yaakov Levy, Dana Vuzman, Yonit Hoffman, 2011, Pacific Symposium on Biocomputing.

Assessment of CASP8 structure predictions for template free targets

Jaime Prilusky, Joel L Sussman, Yaakov Levy, 2009, Proteins.

Energy Landscapes of Protein Self-Assembly: Lessons from Native Topology-Based Models

José N. Onuchic, Yaakov Levy, 2007 .

Understanding hydrogen-bond patterns in proteins using network motifs

Gideon Schreiber, Uri Alon, Yaakov Levy, 2009, Bioinform..

Simulations of proteins with inhomogeneous degrees of freedom: The effect of thermostats

Yaakov Levy, Guy Ziv, Amit Mor, 2008, J. Comput. Chem..

Analyzing Change in Protein Stability Associated with Single Point Deletions in a Newly Defined Protein Structure Database.

Pralay Mitra, Anupam Banerjee, Yaakov Levy, 2019, Journal of proteome research.

Structure, stability and specificity of the binding of ssDNA and ssRNA with proteins

Yaakov Levy, Arumay Pal, Y. Levy, 2019, PLoS Comput. Biol..

A survey of flexible protein binding mechanisms and their transition states using native topology based energy landscapes.

Peter G Wolynes, Yaakov Levy, José N Onuchic, 2005, Journal of molecular biology.

DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail

Yaakov Levy, Dana Vuzman, Y. Levy, 2010, Proceedings of the National Academy of Sciences.

Disordered tails of homeodomains facilitate DNA recognition by providing a trade-off between folding and specific binding.

Monika Fuxreiter, Yaakov Levy, Istvan Simon, 2009, Journal of the American Chemical Society.

Overcoming residual frustration in domain-swapping: the roles of disulfide bonds in dimerization and aggregation

Peter G Wolynes, Yaakov Levy, José N Onuchic, 2005, Physical biology.

Dynamics of hierarchical folding on energy landscapes of hexapeptides

Joshua Jortner, Yaakov Levy, Oren M. Becker, 2001 .

Mutations as trapdoors to two competing native conformations of the Rop-dimer

Yaakov Levy, Alexander Schug, José N Onuchic, 2007, Proceedings of the National Academy of Sciences.

Sliding of p53 along DNA can be modulated by its oligomeric state and by cross-talks between its constituent domains.

Yaakov Levy, Netaly Khazanov, N. Khazanov, 2011, Journal of molecular biology.

Protein topology determines binding mechanism.

Peter G Wolynes, Yaakov Levy, José N Onuchic, 2004, Proceedings of the National Academy of Sciences of the United States of America.

P versus Q: structural reaction coordinates capture protein folding on smooth landscapes.

Peter G Wolynes, Yaakov Levy, Samuel S. Cho, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Weak frustration regulates sliding and binding kinetics on rugged protein-DNA landscapes.

Yaakov Levy, Y. Levy, A. Marcovitz, 2013, The journal of physical chemistry. B.

Symmetry and frustration in protein energy landscapes: a near degeneracy resolves the Rop dimer-folding mystery.

Peter G Wolynes, Tongye Shen, Yaakov Levy, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Frustration in protein–DNA binding influences conformational switching and target search kinetics

Yaakov Levy, Y. Levy, A. Marcovitz, 2011, Proceedings of the National Academy of Sciences.

Folding of elongated proteins: conventional or anomalous?

Yaakov Levy, Tzachi Hagai, Y. Levy, 2008, Journal of the American Chemical Society.

Eigenvalue spectrum of the master equation for hierarchical dynamics of complex systems

Joshua Jortner, Yaakov Levy, R. Stephen Berry, 2002 .

Conformational transitions of adenylate kinase: switching by cracking.

Osamu Miyashita, Yaakov Levy, José N Onuchic, 2007, Journal of molecular biology.

Energy Landscape Analysis of Protein Dimers

Peter G. Wolynes, José N. Onuchic, Yaakov Levy, 2004 .

The folding energy landscape of the dimerization domain of Escherichia coli Trp repressor: a joint experimental and theoretical investigation.

Yaakov Levy, José N Onuchic, J. Onuchic, 2006, Journal of molecular biology.

Flexibility of monomeric and dimeric HIV-1 protease

Amedeo Caflisch, Yaakov Levy, A. Caflisch, 2003 .

The folding and dimerization of HIV-1 protease: evidence for a stable monomer from simulations.

Peter G Wolynes, Amedeo Caflisch, Yaakov Levy, 2004, Journal of molecular biology.

The origins and evolution of ubiquitination sites.

Yaakov Levy, Ágnes Tóth-Petróczy, Tzachi Hagai, 2012, Molecular bioSystems.

Modulation of folding kinetics of repeat proteins: interplay between intra- and interdomain interactions.

Emmanuel Trizac, Yaakov Levy, Tzachi Hagai, 2012, Biophysical journal.

Nonnative electrostatic interactions can modulate protein folding: molecular dynamics with a grain of salt.

Yaakov Levy, Y. Levy, A. Azia, 2009, Journal of molecular biology.

Quantitative criteria for native energetic heterogeneity influences in the prediction of protein folding kinetics

Peter G Wolynes, Yaakov Levy, Samuel S. Cho, 2009, Proceedings of the National Academy of Sciences.

Confinement effects on the kinetics and thermodynamics of protein dimerization

Wei Wang, Yaakov Levy, P G Wolynes, 2009, Proceedings of the National Academy of Sciences.

Folding of multidomain proteins: Biophysical consequences of tethering even in apparently independent folding

Yaakov Levy, Y. Levy, O. Arviv, 2012, Proteins.

Ubiquitin not only serves as a tag but also assists degradation by inducing protein unfolding

Yaakov Levy, Tzachi Hagai, Y. Levy, 2010, Proceedings of the National Academy of Sciences.

Capillarity theory for the fly-casting mechanism

Peter G Wolynes, Emmanuel Trizac, Yaakov Levy, 2010, Proceedings of the National Academy of Sciences.

Fly-casting in protein-DNA binding: frustration between protein folding and electrostatics facilitates target recognition.

Peter G Wolynes, Yaakov Levy, José N Onuchic, 2007, Journal of the American Chemical Society.

Effect of Conformational Constraints on the Topography of Complex Potential Energy Surfaces

Yaakov Levy, Oren M. Becker, O. Becker, 1998 .

Water and proteins: a love-hate relationship.

Yaakov Levy, José N Onuchic, J. Onuchic, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Water organization between oppositely charged surfaces: implications for protein sliding along DNA.

Yaakov Levy, Y. Levy, A. Marcovitz, 2015, The Journal of chemical physics.

Protein sliding along DNA: dynamics and structural characterization.

Yaakov Levy, Y. Levy, Ohad Givaty, 2009, Journal of molecular biology.

Arc-repressor dimerization on DNA: folding rate enhancement by colocalization.

Yaakov Levy, Y. Levy, Amir Marcovitz, 2009, Biophysical journal.

On the coupling between the dynamics of protein and water.

Yaakov Levy, Y. Levy, Jessica D. Leuchter, 2017, Physical chemistry chemical physics : PCCP.