T. Numata

发表

Snapshots of tRNA sulphuration via an adenylated intermediate

Yoshiho Ikeuchi, Osamu Nureki, Tsutomu Suzuki, 2006, Nature.

Crystal structure of archaeal ribonuclease P protein Ph1771p from Pyrococcus horikoshii OT3: an archaeal homolog of eukaryotic ribonuclease P protein Rpp29.

I. Tanaka, M. Kimura, Y. Kakuta, 2004, RNA.

Crystallization and preliminary X-ray diffraction analysis of the tRNA-modification enzyme GidA from Aquifex aeolicus.

T. Osawa, T. Numata, H. Inanaga, 2009, Acta crystallographica. Section F, Structural biology and crystallization communications.

Crystallization and preliminary X-ray analysis of the tRNA thiolation enzyme MnmA from Escherichia coli complexed with tRNAGlu

Tsuyoshi Inoue, Yusuke Mori, Hiroaki Adachi, 2006 .

Purification, crystallization and preliminary X-ray diffraction of SecDF, a translocon-associated membrane protein, from Thermus thermophilus.

Tsuyoshi Inoue, Yusuke Mori, Hiroaki Adachi, 2006, Acta crystallographica. Section F, Structural biology and crystallization communications.

A chemical probe based on the PreQ1 metabolite enables transcriptome-wide mapping of binding sites

C. Lai, T. Numata, D. Incarnato, 2021, Nature Communications.

Crystallization and preliminary X-ray diffraction analysis of the Cmr2-Cmr3 subcomplex in the CRISPR-Cas RNA-silencing effector complex.

T. Osawa, T. Numata, H. Inanaga, 2013, Acta crystallographica. Section F, Structural biology and crystallization communications.

Structure, mechanism, and phylogeny of LysM-chitinase conjugates specifically found in fern plants.

T. Numata, T. Taira, T. Ohnuma, 2022, Plant science : an international journal of experimental plant biology.

Crystallization and preliminary X-ray diffraction analysis of an archaeal tRNA-modification enzyme, TiaS, complexed with tRNA(Ile2) and ATP.

Tsutomu Suzuki, T. Osawa, S. Kimura, 2011, Acta crystallographica. Section F, Structural biology and crystallization communications.

Crystallization and preliminary X-ray diffraction analysis of a class V chitinase from Nicotiana tabacum.

T. Osawa, T. Numata, T. Ohnuma, 2010, Acta crystallographica. Section F, Structural biology and crystallization communications.

Characterization of two rice GH18 chitinases belonging to family 8 of plant pathogenesis-related proteins.

T. Numata, T. Ohnuma, T. Fukamizo, 2022, Plant science : an international journal of experimental plant biology.

Mechanisms of the tRNA wobble cytidine modification essential for AUA codon decoding in prokaryotes

T. Numata, 2015, Bioscience, biotechnology, and biochemistry.

Convergent evolution of AUA decoding in bacteria and archaea

Tsutomu Suzuki, T. Numata, 2014, RNA biology.

Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity.

I. Tanaka, N. Yamasaki, M. Kimura, 2000, Biochemical and biophysical research communications.

Expression and Mutational Analysis of Amino Acid Residues Involved in Catalytic Activity in a Ribonuclease MC1 from the Seeds of Bitter Gourd

N. Yamasaki, M. Ishiguro, T. Numata, 2000, Bioscience, biotechnology, and biochemistry.

Structural basis for sulfur relay to RNA mediated by heterohexameric TusBCD complex.

O. Nureki, Tsutomu Suzuki, S. Fukai, 2006, Structure.

Crystal structure of the CRISPR-Cas RNA silencing Cmr complex bound to a target analog.

Chikara Sato, T. Osawa, C. Sato, 2015, Molecular cell.

DNA polymerase D temporarily connects primase to the CMG-like helicase before interacting with proliferating cell nuclear antigen

Y. Ishino, T. Shirai, S. Ishino, 2021, Nucleic acids research.

Metabolic and chemical regulation of tRNA modification associated with taurine deficiency and human disease

Y. Okazaki, Tsutomu Suzuki, K. Tomizawa, 2018, Nucleic acids research.

Crystallization and preliminary X-ray diffraction analysis of the CRISPR-Cas RNA-silencing Cmr complex.

T. Osawa, T. Numata, H. Inanaga, 2015, Acta crystallographica. Section F, Structural biology communications.

Crystal structure of the Csm3-Csm4 subcomplex in the type III-A CRISPR-Cas interference complex.

Chikara Sato, T. Osawa, C. Sato, 2014, Journal of molecular biology.

Crystal structure of the Cmr2-Cmr3 subcomplex in the CRISPR-Cas RNA silencing effector complex.

T. Osawa, Tomoyuki Numata, T. Numata, 2013, Journal of molecular biology.

GET pathway mediates transfer of mislocalized tail-anchored proteins from mitochondria to the ER

S. Matsumoto, T. Endo, S. Okada, 2022, The Journal of cell biology.

A class V chitinase from Arabidopsis thaliana: gene responses, enzymatic properties, and crystallographic analysis

K. Skriver, T. Osawa, T. Numata, 2011, Planta.

Crystal structure and biochemical characterization of CJP38, a β-1,3-glucanase and allergen of Cryptomeria japonica pollen.

T. Numata, T. Ohnuma, T. Fukamizo, 2019, Molecular immunology.

Conserved cysteine residues of GidA are essential for biogenesis of 5-carboxymethylaminomethyluridine at tRNA anticodon.

O. Nureki, Koichi Ito, T. Osawa, 2009, Structure.

Minimal protein-only RNase P structure reveals insights into tRNA precursor recognition and catalysis

M. Kawasaki, T. Teramoto, Y. Kakuta, 2021, The Journal of biological chemistry.

Crystal structure and mode of action of a class V chitinase from Nicotiana tabacum

T. Osawa, K. Vårum, T. Numata, 2011, Plant Molecular Biology.

Crystal structure of a "loopless" GH19 chitinase in complex with chitin tetrasaccharide spanning the catalytic center.

T. Numata, T. Taira, T. Ohnuma, 2014, Biochimica et biophysica acta.

A Novel Transition-state Analogue for Lysozyme, 4-O-β-Tri-N-acetylchitotriosyl Moranoline, Provided Evidence Supporting the Covalent Glycosyl-enzyme Intermediate*

T. Numata, T. Ohnuma, N. Umemoto, 2013, The Journal of Biological Chemistry.

Mechanism for the alteration of the substrate specificities of template-independent RNA polymerases.

T. Numata, K. Tomita, Y. Toh, 2011, Structure.

Mechanism for the definition of elongation and termination by the class II CCA‐adding enzyme

O. Nureki, S. Fukai, T. Numata, 2009, The EMBO journal.

Molecular basis for maintenance of fidelity during the CCA‐adding reaction by a CCA‐adding enzyme

O. Nureki, T. Numata, K. Tomita, 2008, The EMBO journal.

Family D DNA polymerase interacts with GINS to promote CMG-helicase in the archaeal replisome

Y. Ishino, S. Ishino, T. Oyama, 2021, Nucleic acids research.

Synthetic ligands for PreQ1 riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure

A. Ferré-D’Amaré, J. Barchi, T. Numata, 2019, Nature Communications.

Crystal structures and inhibitor binding properties of plant class V chitinases: the cycad enzyme exhibits unique structural and functional features.

T. Osawa, S. Sakuda, T. Numata, 2015, The Plant journal : for cell and molecular biology.

Role of Tryptophan Residues in a Class V Chitinase from Nicotiana tabacum

Takanori Yamamoto, T. Numata, T. Ohnuma, 2012, Bioscience, biotechnology, and biochemistry.

Genetic and Biochemical Characterizations of aLhr1 Helicase in the Thermophilic Crenarchaeon Sulfolobus acidocaldarius

S. Matsumoto, Y. Ishino, N. Kurosawa, 2021, Catalysts.

Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea.

Tsutomu Suzuki, Takeo Suzuki, S. Kimura, 2010, Nature chemical biology.

Chitin oligosaccharide binding to the lysin motif of a novel type of chitinase from the multicellular green alga, Volvox carteri

T. Numata, T. Ohnuma, T. Fukamizo, 2016, Plant Molecular Biology.

Modulation of the transglycosylation activity of plant family GH18 chitinase by removing or introducing a tryptophan side chain

T. Osawa, T. Numata, T. Ohnuma, 2015, FEBS letters.

Crystal structure and chitin oligosaccharide‐binding mode of a ‘loopful’ family GH19 chitinase from rye, Secale cereale, seeds

T. Osawa, T. Numata, T. Ohnuma, 2012, The FEBS journal.

Complete subsite mapping of a “loopful” GH19 chitinase from rye seeds based on its crystal structure

T. Numata, T. Ohnuma, N. Umemoto, 2013, FEBS letters.

Structural basis of tRNA agmatinylation essential for AUA codon decoding

Tsutomu Suzuki, T. Osawa, S. Kimura, 2011, Nature Structural &Molecular Biology.

Reconstitution of archaeal ribonuclease P from RNA and four protein components.

M. Kimura, Y. Kouzuma, T. Numata, 2003, Biochemical and biophysical research communications.

Structural Basis of RNA-Dependent Recruitment of Glutamine to the Genetic Code

Liang Feng, Kelly Sheppard, Osamu Nureki, 2006, Science.

Crystal structure and thermodynamic dissection of chitin oligosaccharide binding to the LysM module of chitinase-A from Pteris ryukyuensis.

M. Sørlie, T. Numata, T. Taira, 2017, Biochemical and biophysical research communications.

Contribution of Gln9 and Phe80 to substrate binding in ribonuclease MC1 from bitter gourd seeds.

M. Kimura, T. Numata, 2001, Journal of biochemistry.

Crystal structures of the ribonuclease MC1 mutants N71T and N71S in complex with 5'-GMP: structural basis for alterations in substrate specificity.

I. Tanaka, M. Kimura, M. Yao, 2003, Biochemistry.

Amino Acids Conserved at the C-Terminal Half of the Ribonuclease T2 Family Contribute to Protein Stability of the Enzymes

M. Kimura, K. Kimura, Y. Kakuta, 2004, Bioscience, biotechnology, and biochemistry.

Crystal Structures of Csm2 and Csm3 in the Type III-A CRISPR-Cas Effector Complex.

T. Numata, H. Inanaga, D. Takeshita, 2019, Journal of molecular biology.

Synthetic ligands for PreQ1 riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure

A. Ferré-D’Amaré, J. Barchi, T. Numata, 2019, Nature Communications.

A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3.

M. Kimura, Y. Kakuta, T. Numata, 2006, Biochemical and biophysical research communications.

Crystal structure of a ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3: an archaeal homologue of human nuclear ribonuclease P protein Rpp21.

I. Tanaka, M. Kimura, M. Yao, 2005, Biochemistry.

Crystal structure of the ribonuclease P protein Ph1877p from hyperthermophilic archaeon Pyrococcus horikoshii OT3.

I. Tanaka, M. Kimura, Y. Kakuta, 2004, Biochemical and biophysical research communications.

Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase.

T. Numata, H. Kimoto, T. Ohnuma, 2016, The Biochemical journal.

A class III chitinase without disulfide bonds from the fern, Pteris ryukyuensis: crystal structure and ligand-binding studies

S. Sakuda, T. Numata, T. Taira, 2015, Planta.

Crystallization and preliminary X-ray diffraction analysis of an active-site mutant of `loopless' family GH19 chitinase from Bryum coronatum in a complex with chitotetraose.

T. Numata, T. Taira, T. Ohnuma, 2013, Acta crystallographica. Section F, Structural biology and crystallization communications.

[Review: Symposium on Applied Glycoscience] Synthesis of Lysozyme Transition-state Analogue and the Analysis of Hydrolytic Mechanism

T. Numata, T. Ohnuma, N. Umemoto, 2014 .

Biogenesis of 2-agmatinylcytidine catalyzed by the dual protein and RNA kinase TiaS

Tsutomu Suzuki, T. Osawa, S. Kimura, 2011, Nature Structural &Molecular Biology.

標的類似体と結合したCRISPR-Cas系Cmr複合体の結晶構造;標的類似体と結合したCRISPR-Cas系Cmr複合体の結晶構造;Crystal Structure of the CRISPR-Cas RNA Silencing Cmr Complex Bound to a Target Analog

T. Osawa, T. Numata, 2015 .