Wei Shi

Detecting and correcting systematic variation in large-scale RNA sequencing data

Wei Shi, Leming Shi, Jean Thierry-Mieg, 2014, Nature Biotechnology.

Transposon mutagenesis reveals cooperation of ETS family transcription factors with signaling pathways in erythro-megakaryocytic leukemia

G. Smyth, N. Copeland, N. Jenkins, 2013, Proceedings of the National Academy of Sciences.

Haemopedia RNA-seq: a database of gene expression during haematopoiesis in mice and humans

Wei Shi, Michael J. Wilson, Nick Wilson, 2018, Nucleic Acids Res..

Expression and function of long non-coding RNA DLX6-AS1 in endometrial cancer

Wei Shi, Yan Liang, Jia-Xin Lin, 2023, BIOCELL.

BeadArray Expression Analysis Using Bioconductor

Wei Shi, Mike L. Smith, Mark J. Dunning, 2011, PLoS Comput. Biol..

HDAC inhibitors induce tumor-cell-selective pro-apoptotic transcriptional responses

G K Smyth, Jessica E. Bolden, W. Shi, 2013, Cell Death and Disease.

Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR

Matthew E. Ritchie, Yang Liao, G. Smyth, 2023, bioRxiv.

cellCounts: an R function for quantifying 10x Chromium single-cell RNA sequencing data

Yang Liao, B. Pal, L. Mielke, 2023, Bioinformatics.